Wall clock time and date at job start Wed Apr 1 2020 06:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31503 * 1 3 3 Si 1.86804 * 120.00028 * 2 1 4 4 H 1.48503 * 109.47217 * 270.00314 * 3 2 1 5 5 H 1.48504 * 109.46699 * 30.00197 * 3 2 1 6 6 H 1.48498 * 109.47006 * 150.00140 * 3 2 1 7 7 C 1.37883 * 120.00208 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00220 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99715 * 0.02562 * 7 2 1 10 10 O 1.42895 * 113.25518 * 312.94802 * 9 7 2 11 11 C 1.53515 * 114.16635 * 180.02562 * 9 7 2 12 12 N 1.47480 * 87.93083 * 220.13802 * 11 9 7 13 13 C 1.46898 * 111.00003 * 138.70430 * 12 11 9 14 14 C 1.52999 * 109.46951 * 170.00083 * 13 12 11 15 15 H 1.09004 * 109.47114 * 304.99798 * 14 13 12 16 16 O 1.42900 * 109.47279 * 64.99958 * 14 13 12 17 17 C 1.53002 * 109.47171 * 185.00024 * 14 13 12 18 18 O 1.42906 * 109.47176 * 174.99844 * 17 14 13 19 19 C 1.42900 * 113.99605 * 180.67355 * 18 17 14 20 20 H 1.08997 * 109.22284 * 31.50888 * 19 18 17 21 21 C 1.52725 * 109.25204 * 272.05962 * 19 18 17 22 22 C 1.53330 * 108.39215 * 188.69465 * 21 19 18 23 23 C 1.52750 * 108.35365 * 69.91873 * 22 21 19 24 24 C 1.50632 * 110.57736 * 308.87196 * 23 22 21 25 25 C 1.38905 * 117.74416 * 197.52215 * 24 23 22 26 26 C 1.37938 * 120.54597 * 180.29003 * 25 24 23 27 27 C 1.38266 * 119.76778 * 0.02562 * 26 25 24 28 28 C 1.37935 * 119.77087 * 359.89487 * 27 26 25 29 29 C 1.37660 * 122.56810 * 17.64436 * 24 23 22 30 30 C 1.47481 * 87.83561 * 27.00981 * 12 11 9 31 31 H 0.97004 * 120.00825 * 359.97438 * 1 2 3 32 32 H 0.96696 * 114.00009 * 47.05283 * 10 9 7 33 33 H 1.08998 * 113.47776 * 105.37149 * 11 9 7 34 34 H 1.09000 * 113.53194 * 334.91358 * 11 9 7 35 35 H 1.09000 * 109.46872 * 50.00322 * 13 12 11 36 36 H 1.09002 * 109.47041 * 289.99756 * 13 12 11 37 37 H 0.96698 * 114.00023 * 59.99939 * 16 14 13 38 38 H 1.09004 * 109.46985 * 54.99814 * 17 14 13 39 39 H 1.09000 * 109.47167 * 295.00022 * 17 14 13 40 40 H 1.09003 * 109.68249 * 308.41868 * 21 19 18 41 41 H 1.09001 * 109.68441 * 68.96778 * 21 19 18 42 42 H 1.09003 * 109.68301 * 189.62300 * 22 21 19 43 43 H 1.08994 * 109.68194 * 310.18365 * 22 21 19 44 44 H 1.09004 * 109.25478 * 188.58885 * 23 22 21 45 45 H 1.09000 * 109.25781 * 69.16006 * 23 22 21 46 46 H 1.08003 * 119.73054 * 0.32034 * 25 24 23 47 47 H 1.07997 * 120.11482 * 179.97438 * 26 25 24 48 48 H 1.07992 * 120.11500 * 179.89057 * 27 26 25 49 49 H 1.08004 * 119.72350 * 179.97438 * 28 27 26 50 50 H 1.09000 * 113.47508 * 87.75915 * 30 12 11 51 51 H 1.09000 * 113.47653 * 218.22089 * 30 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6526 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 8 0.1938 -2.5412 0.9588 11 6 2.1497 -3.7438 -0.0016 12 7 1.2058 -4.3598 -0.9527 13 6 1.9221 -5.0892 -2.0074 14 6 0.9255 -5.9150 -2.8235 15 1 0.3578 -6.5629 -2.1556 16 8 0.0307 -5.0382 -3.5110 17 6 1.6839 -6.7700 -3.8407 18 8 0.7650 -7.6262 -4.5225 19 6 1.3765 -8.4824 -5.4895 20 1 2.3852 -8.7324 -5.1606 21 6 1.4498 -7.7557 -6.8308 22 6 1.9032 -8.7573 -7.8995 23 6 0.7701 -9.7540 -8.1363 24 6 0.2928 -10.3330 -6.8302 25 6 -0.4544 -11.5031 -6.8762 26 6 -0.9258 -12.0800 -5.7153 27 6 -0.6533 -11.4890 -4.4953 28 6 0.0899 -10.3280 -4.4475 29 6 0.5675 -9.7468 -5.6153 30 6 0.8528 -2.9987 -1.3975 31 1 -0.4851 0.8400 0.0004 32 1 -0.3706 -1.7560 0.9570 33 1 2.1883 -4.2514 0.9622 34 1 3.1386 -3.5665 -0.4244 35 1 2.6586 -5.7528 -1.5543 36 1 2.4271 -4.3787 -2.6619 37 1 0.4680 -4.4316 -4.1240 38 1 2.4288 -7.3748 -3.3235 39 1 2.1801 -6.1212 -4.5625 40 1 0.4666 -7.3628 -7.0896 41 1 2.1672 -6.9376 -6.7664 42 1 2.1271 -8.2291 -8.8263 43 1 2.7915 -9.2860 -7.5538 44 1 1.1282 -10.5597 -8.7772 45 1 -0.0589 -9.2455 -8.6285 46 1 -0.6676 -11.9653 -7.8287 47 1 -1.5063 -12.9895 -5.7592 48 1 -1.0211 -11.9349 -3.5831 49 1 0.3019 -9.8668 -3.4942 50 1 1.4952 -2.6217 -2.1933 51 1 -0.2077 -2.8749 -1.6169 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000515165296.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:32:48 Heat of formation + Delta-G solvation = -113.247818 kcal Electronic energy + Delta-G solvation = -30489.076874 eV Core-core repulsion = 26353.026549 eV Total energy + Delta-G solvation = -4136.050325 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.24696 -40.99764 -39.21031 -37.77446 -36.36381 -36.01326 -34.09488 -32.96510 -32.04850 -31.18337 -29.66868 -28.95035 -27.14079 -26.64576 -24.58496 -24.00791 -23.60372 -22.92728 -22.42563 -20.49793 -20.35855 -19.31003 -18.03397 -17.91164 -17.35657 -17.13230 -16.83785 -16.64774 -16.41542 -16.24877 -15.88132 -15.72617 -15.45583 -15.22682 -14.89309 -14.59829 -14.25776 -14.20338 -14.00587 -13.88001 -13.70010 -13.46340 -13.37576 -13.22176 -13.06344 -12.90785 -12.63102 -12.50047 -12.43454 -12.28337 -12.24645 -11.96742 -11.86885 -11.78151 -11.65161 -11.33839 -11.12342 -10.90476 -10.63428 -10.56508 -10.06155 -9.68650 -9.61743 -9.50317 -8.24388 -6.42763 0.37703 0.46408 1.42209 1.44571 1.54937 2.36390 2.42755 2.87312 2.96369 3.29581 3.49802 3.62758 3.71606 3.88169 3.93321 3.99945 4.02928 4.06792 4.13312 4.14457 4.20341 4.24096 4.29798 4.33664 4.38693 4.46106 4.48331 4.52427 4.54691 4.61883 4.68804 4.74357 4.90536 4.92257 4.95794 4.99050 5.06202 5.10533 5.12931 5.22885 5.25879 5.34217 5.39128 5.48609 5.58269 5.61943 5.70644 5.75838 5.97200 6.10013 6.23017 6.36657 6.63728 6.83529 7.30456 7.56232 8.80777 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.022049 B = 0.001929 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.618995 B =14515.503925 C =15191.647129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.023 3.977 3 Si 0.971 3.029 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.555 4.555 8 H 0.069 0.931 9 C 0.212 3.788 10 O -0.587 6.587 11 C 0.012 3.988 12 N -0.474 5.474 13 C -0.009 4.009 14 C 0.127 3.873 15 H 0.085 0.915 16 O -0.567 6.567 17 C 0.040 3.960 18 O -0.387 6.387 19 C 0.129 3.871 20 H 0.077 0.923 21 C -0.139 4.139 22 C -0.113 4.113 23 C -0.082 4.082 24 C -0.077 4.077 25 C -0.133 4.133 26 C -0.120 4.120 27 C -0.140 4.140 28 C -0.116 4.116 29 C -0.101 4.101 30 C 0.006 3.994 31 H 0.274 0.726 32 H 0.383 0.617 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.057 0.943 37 H 0.378 0.622 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.076 0.924 42 H 0.089 0.911 43 H 0.071 0.929 44 H 0.095 0.905 45 H 0.080 0.920 46 H 0.145 0.855 47 H 0.144 0.856 48 H 0.134 0.866 49 H 0.114 0.886 50 H 0.063 0.937 51 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.557 -21.271 -18.261 28.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.176 4.176 3 Si 0.795 3.205 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.593 4.593 8 H 0.087 0.913 9 C 0.171 3.829 10 O -0.399 6.399 11 C -0.116 4.116 12 N -0.196 5.196 13 C -0.138 4.138 14 C 0.067 3.933 15 H 0.103 0.897 16 O -0.373 6.373 17 C -0.038 4.038 18 O -0.307 6.307 19 C 0.071 3.929 20 H 0.095 0.905 21 C -0.177 4.177 22 C -0.150 4.150 23 C -0.119 4.119 24 C -0.077 4.077 25 C -0.151 4.151 26 C -0.138 4.138 27 C -0.158 4.158 28 C -0.134 4.134 29 C -0.101 4.101 30 C -0.124 4.124 31 H 0.084 0.916 32 H 0.238 0.762 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.114 0.886 36 H 0.075 0.925 37 H 0.225 0.775 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.095 0.905 42 H 0.107 0.893 43 H 0.089 0.911 44 H 0.113 0.887 45 H 0.098 0.902 46 H 0.163 0.837 47 H 0.162 0.838 48 H 0.152 0.848 49 H 0.132 0.868 50 H 0.081 0.919 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 4.515 -22.557 -17.520 28.917 hybrid contribution 0.997 2.255 -0.326 2.487 sum 5.513 -20.302 -17.846 27.587 Atomic orbital electron populations 1.69387 1.07384 1.28669 1.50799 1.25882 0.95781 1.02990 0.92993 0.85363 0.78518 0.78146 0.78424 1.19697 1.20779 1.19183 1.21841 0.93877 0.91490 1.52078 0.91325 1.19835 0.85511 0.92019 0.85526 1.86006 1.45917 1.47806 1.60128 1.24007 0.95614 0.94823 0.97203 1.68747 1.27059 1.13146 1.10667 1.23330 0.96421 0.98927 0.95154 1.21729 0.90617 0.89539 0.91413 0.89673 1.86649 1.37409 1.52666 1.60564 1.23239 0.92117 0.93449 0.94961 1.88044 1.34905 1.53202 1.54527 1.20883 0.95128 0.87553 0.89288 0.90535 1.22036 1.02302 0.98920 0.94436 1.21520 0.98004 0.96402 0.99067 1.20580 0.98754 0.99355 0.93208 1.19905 0.97672 0.95646 0.94475 1.21459 0.98358 0.95689 0.99547 1.21431 0.99495 1.00563 0.92285 1.21350 0.99241 0.96022 0.99179 1.21272 0.98067 0.95816 0.98265 1.19638 1.00843 0.96164 0.93430 1.24362 0.99335 0.88537 1.00149 0.91626 0.76244 0.91309 0.89949 0.88618 0.92496 0.77457 0.90766 0.91322 0.92093 0.90501 0.89285 0.91072 0.88708 0.90176 0.83742 0.83776 0.84841 0.86812 0.91907 0.93980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.53 11.02 21.45 0.24 -50.29 16 2 C 0.02 1.21 5.39 84.66 0.46 1.67 16 3 Si 0.97 41.31 29.54 68.60 2.03 43.34 16 4 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 5 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 6 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 7 C -0.55 -29.48 8.70 25.60 0.22 -29.26 16 8 H 0.07 3.50 7.81 -2.91 -0.02 3.48 16 9 C 0.21 10.95 1.56 -11.20 -0.02 10.93 16 10 O -0.59 -33.51 13.53 -148.98 -2.02 -35.52 16 11 C 0.01 0.52 7.09 83.58 0.59 1.12 16 12 N -0.47 -19.60 6.31 -928.25 -5.85 -25.45 16 13 C -0.01 -0.28 4.53 86.30 0.39 0.11 16 14 C 0.13 3.72 3.49 30.59 0.11 3.82 16 15 H 0.09 2.89 8.14 -2.38 -0.02 2.87 16 16 O -0.57 -19.10 12.64 -144.35 -1.83 -20.93 16 17 C 0.04 0.87 5.36 71.98 0.39 1.26 16 18 O -0.39 -9.96 9.14 -144.35 -1.32 -11.28 16 19 C 0.13 2.61 2.60 29.74 0.08 2.69 16 20 H 0.08 1.36 7.78 -2.39 -0.02 1.34 16 21 C -0.14 -2.33 5.53 30.61 0.17 -2.16 16 22 C -0.11 -1.34 5.98 30.62 0.18 -1.16 16 23 C -0.08 -1.03 5.67 29.74 0.17 -0.86 16 24 C -0.08 -1.38 5.74 -19.86 -0.11 -1.50 16 25 C -0.13 -2.10 9.61 22.36 0.21 -1.88 16 26 C -0.12 -1.95 10.05 22.21 0.22 -1.73 16 27 C -0.14 -2.71 10.05 22.20 0.22 -2.49 16 28 C -0.12 -2.66 9.24 22.36 0.21 -2.45 16 29 C -0.10 -2.19 5.57 -19.86 -0.11 -2.30 16 30 C 0.01 0.27 6.50 83.57 0.54 0.81 16 31 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 32 H 0.38 22.41 6.33 -74.06 -0.47 21.94 16 33 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 34 H 0.08 3.15 7.87 -2.39 -0.02 3.13 16 35 H 0.10 2.47 8.08 -2.39 -0.02 2.45 16 36 H 0.06 1.61 7.30 -2.39 -0.02 1.59 16 37 H 0.38 10.12 9.05 -74.06 -0.67 9.45 16 38 H 0.07 1.36 8.06 -2.39 -0.02 1.34 16 39 H 0.07 1.26 7.94 -2.39 -0.02 1.24 16 40 H 0.06 1.22 8.10 -2.39 -0.02 1.21 16 41 H 0.08 1.13 7.95 -2.39 -0.02 1.11 16 42 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.07 0.79 8.10 -2.39 -0.02 0.77 16 44 H 0.09 0.82 8.13 -2.38 -0.02 0.80 16 45 H 0.08 0.98 8.14 -2.39 -0.02 0.97 16 46 H 0.14 1.49 8.05 -2.91 -0.02 1.47 16 47 H 0.14 1.57 8.06 -2.91 -0.02 1.54 16 48 H 0.13 2.11 8.06 -2.91 -0.02 2.09 16 49 H 0.11 2.73 7.68 -2.91 -0.02 2.71 16 50 H 0.06 2.77 7.38 -2.39 -0.02 2.76 16 51 H 0.04 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -66.96 406.91 -5.04 -72.00 By element: Atomic # 1 Polarization: 51.72 SS G_CDS: -0.21 Total: 51.51 kcal Atomic # 6 Polarization: -27.30 SS G_CDS: 3.92 Total: -23.38 kcal Atomic # 7 Polarization: -70.13 SS G_CDS: -5.62 Total: -75.74 kcal Atomic # 8 Polarization: -62.57 SS G_CDS: -5.16 Total: -67.73 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -66.96 -5.04 -72.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515165296.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.251 kcal (2) G-P(sol) polarization free energy of solvation -66.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds