Wall clock time and date at job start Wed Apr 1 2020 06:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99755 * 2 1 4 4 H 1.48493 * 109.47411 * 270.00333 * 3 2 1 5 5 H 1.48499 * 109.46978 * 30.00637 * 3 2 1 6 6 H 1.48505 * 109.46959 * 150.00239 * 3 2 1 7 7 C 1.37875 * 120.00383 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00163 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99886 * 359.97438 * 7 2 1 10 10 O 1.42900 * 113.25140 * 312.94865 * 9 7 2 11 11 C 1.53513 * 114.17202 * 180.02562 * 9 7 2 12 12 N 1.47473 * 87.93049 * 220.32455 * 11 9 7 13 13 C 1.46901 * 110.99865 * 138.70174 * 12 11 9 14 14 C 1.53000 * 109.47157 * 170.00110 * 13 12 11 15 15 H 1.09008 * 109.47650 * 60.00018 * 14 13 12 16 16 O 1.42902 * 109.47055 * 299.99791 * 14 13 12 17 17 C 1.53000 * 109.47140 * 179.97438 * 14 13 12 18 18 O 1.42911 * 109.47149 * 185.00006 * 17 14 13 19 19 C 1.42896 * 113.99945 * 184.52286 * 18 17 14 20 20 H 1.09003 * 109.21399 * 327.72199 * 19 18 17 21 21 C 1.52722 * 109.25529 * 87.16732 * 19 18 17 22 22 C 1.53329 * 108.40232 * 171.35430 * 21 19 18 23 23 C 1.52730 * 108.38211 * 290.15433 * 22 21 19 24 24 C 1.50630 * 110.57732 * 51.16611 * 23 22 21 25 25 C 1.38910 * 117.74838 * 162.45265 * 24 23 22 26 26 C 1.37935 * 120.53872 * 179.97438 * 25 24 23 27 27 C 1.38259 * 119.77209 * 359.39966 * 26 25 24 28 28 C 1.37935 * 119.77546 * 0.40508 * 27 26 25 29 29 C 1.37664 * 122.56193 * 342.07881 * 24 23 22 30 30 C 1.47483 * 87.83908 * 27.00895 * 12 11 9 31 31 H 0.96995 * 120.00799 * 359.97438 * 1 2 3 32 32 H 0.96703 * 114.00466 * 47.05531 * 10 9 7 33 33 H 1.08996 * 113.48040 * 105.55640 * 11 9 7 34 34 H 1.09005 * 113.52646 * 335.10176 * 11 9 7 35 35 H 1.08994 * 109.47267 * 50.00014 * 13 12 11 36 36 H 1.08997 * 109.47080 * 289.99633 * 13 12 11 37 37 H 0.96692 * 114.00079 * 300.00093 * 16 14 13 38 38 H 1.09000 * 109.47660 * 65.00064 * 17 14 13 39 39 H 1.08996 * 109.47367 * 304.99729 * 17 14 13 40 40 H 1.09004 * 109.68584 * 51.62943 * 21 19 18 41 41 H 1.09000 * 109.71295 * 291.09993 * 21 19 18 42 42 H 1.09005 * 109.68221 * 170.43056 * 22 21 19 43 43 H 1.09004 * 109.71368 * 49.89399 * 22 21 19 44 44 H 1.09002 * 109.25599 * 290.87975 * 23 22 21 45 45 H 1.08996 * 109.25521 * 171.45055 * 23 22 21 46 46 H 1.07999 * 119.73147 * 359.71778 * 25 24 23 47 47 H 1.08006 * 120.11560 * 179.68140 * 26 25 24 48 48 H 1.08002 * 120.11515 * 180.37478 * 27 26 25 49 49 H 1.08003 * 119.73007 * 180.02562 * 28 27 26 50 50 H 1.08995 * 113.47566 * 87.75570 * 30 12 11 51 51 H 1.08996 * 113.47597 * 218.22488 * 30 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.1947 -2.5407 0.9609 11 6 2.1498 -3.7438 -0.0005 12 7 1.2076 -4.3583 -0.9542 13 6 1.9260 -5.0862 -2.0088 14 6 0.9309 -5.9107 -2.8279 15 1 0.1951 -5.2466 -3.2815 16 8 0.2674 -6.8436 -1.9726 17 6 1.6790 -6.6684 -3.9267 18 8 0.7388 -7.3457 -4.7631 19 6 1.3396 -8.1694 -5.7644 20 1 2.2832 -7.7227 -6.0777 21 6 1.6076 -9.5556 -5.1820 22 6 2.0467 -10.4828 -6.3215 23 6 0.8419 -10.7404 -7.2241 24 6 0.1942 -9.4413 -7.6262 25 6 -0.6628 -9.4570 -8.7194 26 6 -1.2872 -8.3002 -9.1371 27 6 -1.0687 -7.1175 -8.4554 28 6 -0.2212 -7.1006 -7.3672 29 6 0.4160 -8.2625 -6.9507 30 6 0.8555 -2.9966 -1.3978 31 1 -0.4851 0.8399 0.0004 32 1 -0.3699 -1.7556 0.9592 33 1 2.1866 -4.2528 0.9626 34 1 3.1395 -3.5658 -0.4213 35 1 2.6617 -5.7504 -1.5554 36 1 2.4321 -4.3748 -2.6613 37 1 0.8621 -7.4673 -1.5343 38 1 2.3518 -7.3961 -3.4729 39 1 2.2563 -5.9639 -4.5254 40 1 0.6980 -9.9433 -4.7232 41 1 2.3981 -9.4935 -4.4340 42 1 2.4053 -11.4261 -5.9097 43 1 2.8414 -10.0076 -6.8967 44 1 0.1164 -11.3534 -6.6891 45 1 1.1695 -11.2706 -8.1183 46 1 -0.8383 -10.3817 -9.2491 47 1 -1.9482 -8.3193 -9.9911 48 1 -1.5595 -6.2097 -8.7740 49 1 -0.0513 -6.1763 -6.8349 50 1 1.4994 -2.6185 -2.1918 51 1 -0.2046 -2.8725 -1.6189 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000515165297.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:32:56 Heat of formation + Delta-G solvation = -90.148667 kcal Electronic energy + Delta-G solvation = -30457.759156 eV Core-core repulsion = 26322.710485 eV Total energy + Delta-G solvation = -4135.048671 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.47588 -39.36181 -38.19415 -36.64002 -35.58382 -34.16909 -32.14537 -32.05028 -30.73985 -30.48582 -28.71817 -27.60848 -25.55735 -24.91532 -23.74861 -23.06422 -22.55717 -22.17496 -21.06112 -19.69595 -18.62900 -17.50298 -17.13360 -16.81069 -16.24954 -15.93976 -15.64396 -15.48399 -15.09956 -14.99218 -14.77163 -14.41124 -14.18636 -13.96191 -13.74200 -13.60097 -13.47400 -13.21422 -12.95706 -12.53912 -12.51772 -12.41312 -11.99039 -11.85603 -11.73029 -11.62636 -11.50725 -11.30505 -11.20388 -10.99911 -10.86857 -10.77404 -10.68288 -10.54437 -10.31705 -9.97640 -9.75389 -9.64711 -9.26525 -8.94409 -8.79218 -8.65836 -8.17922 -7.86242 -6.27516 -4.37770 1.10590 1.19852 3.17921 3.25827 3.28730 3.30395 3.65873 4.23598 4.31501 4.34587 4.52324 4.61932 4.69893 4.76110 4.82915 4.86495 4.92890 4.96459 4.97248 5.04009 5.14259 5.22003 5.24864 5.27457 5.39036 5.40303 5.49267 5.51100 5.55903 5.63808 5.67978 5.81810 5.83614 5.90714 5.95665 5.97698 6.08018 6.12433 6.28234 6.31691 6.35088 6.39586 6.43293 6.68449 6.80362 7.05474 7.07796 7.15095 7.34641 7.75767 7.91040 7.98100 8.04268 8.64377 9.32452 9.70089 10.78430 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.017441 B = 0.002008 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.993089 B =13941.504020 C =14777.800032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.070 3.930 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.066 0.934 9 C 0.248 3.752 10 O -0.569 6.569 11 C 0.002 3.998 12 N -0.456 5.456 13 C -0.012 4.012 14 C 0.124 3.876 15 H 0.103 0.897 16 O -0.536 6.536 17 C 0.030 3.970 18 O -0.362 6.362 19 C 0.131 3.869 20 H 0.067 0.933 21 C -0.141 4.141 22 C -0.117 4.117 23 C -0.082 4.082 24 C -0.068 4.068 25 C -0.128 4.128 26 C -0.116 4.116 27 C -0.128 4.128 28 C -0.093 4.093 29 C -0.079 4.079 30 C -0.024 4.024 31 H 0.272 0.728 32 H 0.390 0.610 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.049 0.951 37 H 0.364 0.636 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.078 0.922 45 H 0.075 0.925 46 H 0.120 0.880 47 H 0.121 0.879 48 H 0.123 0.877 49 H 0.126 0.874 50 H 0.058 0.942 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.652 -19.326 -17.208 26.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.574 4.574 8 H 0.084 0.916 9 C 0.207 3.793 10 O -0.381 6.381 11 C -0.127 4.127 12 N -0.178 5.178 13 C -0.142 4.142 14 C 0.064 3.936 15 H 0.120 0.880 16 O -0.339 6.339 17 C -0.048 4.048 18 O -0.281 6.281 19 C 0.073 3.927 20 H 0.085 0.915 21 C -0.179 4.179 22 C -0.154 4.154 23 C -0.119 4.119 24 C -0.068 4.068 25 C -0.146 4.146 26 C -0.134 4.134 27 C -0.146 4.146 28 C -0.111 4.111 29 C -0.080 4.080 30 C -0.153 4.153 31 H 0.082 0.918 32 H 0.246 0.754 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.210 0.790 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.096 0.904 45 H 0.093 0.907 46 H 0.138 0.862 47 H 0.139 0.861 48 H 0.141 0.859 49 H 0.144 0.856 50 H 0.076 0.924 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.506 -19.915 -17.036 26.327 hybrid contribution 1.671 1.685 -0.619 2.452 sum 4.177 -18.230 -17.655 25.719 Atomic orbital electron populations 1.69296 1.06109 1.27874 1.50468 1.25075 0.94991 0.99704 0.93420 0.86396 0.79831 0.82379 0.78243 1.20459 1.20861 1.19675 1.21577 0.93619 0.90568 1.51589 0.91616 1.19321 0.85104 0.90532 0.84378 1.86038 1.45258 1.48098 1.58736 1.24081 0.95201 0.96658 0.96723 1.68935 1.26233 1.13547 1.09118 1.23285 0.96049 0.98889 0.95949 1.21737 0.94873 0.89593 0.87422 0.87958 1.86682 1.36831 1.47507 1.62860 1.23395 0.92392 0.95650 0.93362 1.88081 1.32561 1.62028 1.45432 1.20723 0.94265 0.91077 0.86616 0.91486 1.22055 1.02536 0.95149 0.98163 1.21513 0.97538 0.99840 0.96555 1.20506 0.97230 0.94275 0.99900 1.19561 0.97426 0.94172 0.95624 1.21090 0.97908 0.98389 0.97237 1.21097 0.99565 0.92924 0.99800 1.21126 0.99004 0.98285 0.96159 1.21201 0.95849 0.98304 0.95716 1.19412 0.99244 0.93191 0.96107 1.24792 1.01003 0.87624 1.01872 0.91776 0.75423 0.91052 0.92034 0.91551 0.93323 0.79021 0.93082 0.92601 0.90342 0.91310 0.90976 0.91591 0.90379 0.90696 0.86183 0.86119 0.85943 0.85616 0.92399 0.91231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.18 11.02 55.43 0.61 -23.57 16 2 C 0.07 1.85 5.39 -17.82 -0.10 1.75 16 3 Si 0.90 20.27 29.54 -169.99 -5.02 15.25 16 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 7 C -0.54 -14.23 8.68 -34.44 -0.30 -14.53 16 8 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 9 C 0.25 6.35 1.57 -91.24 -0.14 6.20 16 10 O -0.57 -15.77 13.54 -35.23 -0.48 -16.25 16 11 C 0.00 0.05 7.09 -7.55 -0.05 -0.01 16 12 N -0.46 -9.53 6.20 -244.63 -1.52 -11.04 16 13 C -0.01 -0.19 4.48 -3.82 -0.02 -0.21 16 14 C 0.12 1.87 3.52 -26.73 -0.09 1.77 16 15 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 16 O -0.54 -8.76 13.17 -40.05 -0.53 -9.29 16 17 C 0.03 0.35 5.34 37.16 0.20 0.55 16 18 O -0.36 -4.74 9.14 -40.05 -0.37 -5.11 16 19 C 0.13 1.39 2.60 -28.06 -0.07 1.32 16 20 H 0.07 0.65 7.84 -51.93 -0.41 0.24 16 21 C -0.14 -1.25 5.47 -26.70 -0.15 -1.40 16 22 C -0.12 -0.82 5.98 -26.70 -0.16 -0.98 16 23 C -0.08 -0.60 5.67 -28.06 -0.16 -0.76 16 24 C -0.07 -0.66 5.74 -104.62 -0.60 -1.26 16 25 C -0.13 -1.15 9.61 -39.44 -0.38 -1.53 16 26 C -0.12 -1.05 10.05 -39.68 -0.40 -1.45 16 27 C -0.13 -1.29 10.05 -39.68 -0.40 -1.69 16 28 C -0.09 -1.07 9.25 -39.44 -0.36 -1.43 16 29 C -0.08 -0.89 5.57 -104.62 -0.58 -1.47 16 30 C -0.02 -0.55 7.13 -7.54 -0.05 -0.60 16 31 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.39 10.95 6.33 45.56 0.29 11.24 16 33 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 34 H 0.06 1.23 7.87 -51.93 -0.41 0.83 16 35 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 36 H 0.05 0.76 7.30 -51.93 -0.38 0.38 16 37 H 0.36 4.54 9.05 45.56 0.41 4.95 16 38 H 0.05 0.51 7.73 -51.93 -0.40 0.11 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 41 H 0.07 0.55 7.81 -51.93 -0.41 0.14 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 44 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 46 H 0.12 0.80 8.05 -52.49 -0.42 0.38 16 47 H 0.12 0.82 8.06 -52.48 -0.42 0.39 16 48 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 49 H 0.13 1.47 7.67 -52.48 -0.40 1.07 16 50 H 0.06 1.30 7.37 -51.93 -0.38 0.91 16 51 H 0.07 1.73 8.14 -51.93 -0.42 1.31 16 LS Contribution 407.63 15.07 6.14 6.14 Total: -1.00 -30.71 407.63 -12.09 -42.80 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: -7.12 Total: 16.78 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: -3.82 Total: -15.72 kcal Atomic # 7 Polarization: -33.71 SS G_CDS: -0.91 Total: -34.62 kcal Atomic # 8 Polarization: -29.27 SS G_CDS: -1.37 Total: -30.64 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -30.71 -12.09 -42.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515165297.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.344 kcal (2) G-P(sol) polarization free energy of solvation -30.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds