Wall clock time and date at job start Wed Apr 1 2020 06:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99755 * 2 1 4 4 H 1.48493 * 109.47411 * 270.00333 * 3 2 1 5 5 H 1.48499 * 109.46978 * 30.00637 * 3 2 1 6 6 H 1.48505 * 109.46959 * 150.00239 * 3 2 1 7 7 C 1.37875 * 120.00383 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00163 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99886 * 359.97438 * 7 2 1 10 10 O 1.42900 * 113.25140 * 312.94865 * 9 7 2 11 11 C 1.53513 * 114.17202 * 180.02562 * 9 7 2 12 12 N 1.47473 * 87.93049 * 220.32455 * 11 9 7 13 13 C 1.46901 * 110.99865 * 138.70174 * 12 11 9 14 14 C 1.53000 * 109.47157 * 170.00110 * 13 12 11 15 15 H 1.09008 * 109.47650 * 60.00018 * 14 13 12 16 16 O 1.42902 * 109.47055 * 299.99791 * 14 13 12 17 17 C 1.53000 * 109.47140 * 179.97438 * 14 13 12 18 18 O 1.42911 * 109.47149 * 185.00006 * 17 14 13 19 19 C 1.42896 * 113.99945 * 184.52286 * 18 17 14 20 20 H 1.09003 * 109.21399 * 327.72199 * 19 18 17 21 21 C 1.52722 * 109.25529 * 87.16732 * 19 18 17 22 22 C 1.53329 * 108.40232 * 171.35430 * 21 19 18 23 23 C 1.52730 * 108.38211 * 290.15433 * 22 21 19 24 24 C 1.50630 * 110.57732 * 51.16611 * 23 22 21 25 25 C 1.38910 * 117.74838 * 162.45265 * 24 23 22 26 26 C 1.37935 * 120.53872 * 179.97438 * 25 24 23 27 27 C 1.38259 * 119.77209 * 359.39966 * 26 25 24 28 28 C 1.37935 * 119.77546 * 0.40508 * 27 26 25 29 29 C 1.37664 * 122.56193 * 342.07881 * 24 23 22 30 30 C 1.47483 * 87.83908 * 27.00895 * 12 11 9 31 31 H 0.96995 * 120.00799 * 359.97438 * 1 2 3 32 32 H 0.96703 * 114.00466 * 47.05531 * 10 9 7 33 33 H 1.08996 * 113.48040 * 105.55640 * 11 9 7 34 34 H 1.09005 * 113.52646 * 335.10176 * 11 9 7 35 35 H 1.08994 * 109.47267 * 50.00014 * 13 12 11 36 36 H 1.08997 * 109.47080 * 289.99633 * 13 12 11 37 37 H 0.96692 * 114.00079 * 300.00093 * 16 14 13 38 38 H 1.09000 * 109.47660 * 65.00064 * 17 14 13 39 39 H 1.08996 * 109.47367 * 304.99729 * 17 14 13 40 40 H 1.09004 * 109.68584 * 51.62943 * 21 19 18 41 41 H 1.09000 * 109.71295 * 291.09993 * 21 19 18 42 42 H 1.09005 * 109.68221 * 170.43056 * 22 21 19 43 43 H 1.09004 * 109.71368 * 49.89399 * 22 21 19 44 44 H 1.09002 * 109.25599 * 290.87975 * 23 22 21 45 45 H 1.08996 * 109.25521 * 171.45055 * 23 22 21 46 46 H 1.07999 * 119.73147 * 359.71778 * 25 24 23 47 47 H 1.08006 * 120.11560 * 179.68140 * 26 25 24 48 48 H 1.08002 * 120.11515 * 180.37478 * 27 26 25 49 49 H 1.08003 * 119.73007 * 180.02562 * 28 27 26 50 50 H 1.08995 * 113.47566 * 87.75570 * 30 12 11 51 51 H 1.08996 * 113.47597 * 218.22488 * 30 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.1947 -2.5407 0.9609 11 6 2.1498 -3.7438 -0.0005 12 7 1.2076 -4.3583 -0.9542 13 6 1.9260 -5.0862 -2.0088 14 6 0.9309 -5.9107 -2.8279 15 1 0.1951 -5.2466 -3.2815 16 8 0.2674 -6.8436 -1.9726 17 6 1.6790 -6.6684 -3.9267 18 8 0.7388 -7.3457 -4.7631 19 6 1.3396 -8.1694 -5.7644 20 1 2.2832 -7.7227 -6.0777 21 6 1.6076 -9.5556 -5.1820 22 6 2.0467 -10.4828 -6.3215 23 6 0.8419 -10.7404 -7.2241 24 6 0.1942 -9.4413 -7.6262 25 6 -0.6628 -9.4570 -8.7194 26 6 -1.2872 -8.3002 -9.1371 27 6 -1.0687 -7.1175 -8.4554 28 6 -0.2212 -7.1006 -7.3672 29 6 0.4160 -8.2625 -6.9507 30 6 0.8555 -2.9966 -1.3978 31 1 -0.4851 0.8399 0.0004 32 1 -0.3699 -1.7556 0.9592 33 1 2.1866 -4.2528 0.9626 34 1 3.1395 -3.5658 -0.4213 35 1 2.6617 -5.7504 -1.5554 36 1 2.4321 -4.3748 -2.6613 37 1 0.8621 -7.4673 -1.5343 38 1 2.3518 -7.3961 -3.4729 39 1 2.2563 -5.9639 -4.5254 40 1 0.6980 -9.9433 -4.7232 41 1 2.3981 -9.4935 -4.4340 42 1 2.4053 -11.4261 -5.9097 43 1 2.8414 -10.0076 -6.8967 44 1 0.1164 -11.3534 -6.6891 45 1 1.1695 -11.2706 -8.1183 46 1 -0.8383 -10.3817 -9.2491 47 1 -1.9482 -8.3193 -9.9911 48 1 -1.5595 -6.2097 -8.7740 49 1 -0.0513 -6.1763 -6.8349 50 1 1.4994 -2.6185 -2.1918 51 1 -0.2046 -2.8725 -1.6189 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000515165297.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:32:55 Heat of formation + Delta-G solvation = -113.070169 kcal Electronic energy + Delta-G solvation = -30458.753107 eV Core-core repulsion = 26322.710485 eV Total energy + Delta-G solvation = -4136.042622 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.24866 -40.99940 -39.22796 -37.76022 -36.36035 -36.04822 -34.10885 -32.95664 -32.01628 -31.18954 -29.68024 -28.95947 -27.16826 -26.71376 -24.59524 -24.02468 -23.60277 -22.93510 -22.38324 -20.51942 -20.36254 -19.33267 -18.05796 -17.91940 -17.37369 -17.04314 -16.85918 -16.68449 -16.45380 -16.24382 -15.91130 -15.75213 -15.42185 -15.23001 -14.83374 -14.64926 -14.35716 -14.21596 -14.00798 -13.87024 -13.61608 -13.51051 -13.39234 -13.25368 -13.07477 -12.92853 -12.64303 -12.49721 -12.41758 -12.29021 -12.25160 -12.00458 -11.87877 -11.74170 -11.66211 -11.32762 -11.14733 -10.88584 -10.64409 -10.56894 -10.09275 -9.69971 -9.61298 -9.51084 -8.25910 -6.44363 0.36645 0.45013 1.41492 1.43709 1.54184 2.35384 2.42035 2.85865 2.94944 3.25442 3.55101 3.62905 3.71431 3.81973 3.92391 3.98643 4.01249 4.06582 4.12054 4.15473 4.20173 4.22449 4.28334 4.31937 4.38411 4.44832 4.48281 4.51840 4.53888 4.61464 4.66368 4.73942 4.90427 4.91528 4.95231 4.98094 5.00851 5.10398 5.12262 5.13987 5.25802 5.35324 5.37246 5.47496 5.57195 5.60832 5.69549 5.74220 5.95288 6.08825 6.21780 6.34603 6.62351 6.94181 7.29036 7.54695 8.79375 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.017441 B = 0.002008 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.993089 B =13941.504020 C =14777.800032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.023 3.977 3 Si 0.971 3.029 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.555 4.555 8 H 0.070 0.930 9 C 0.216 3.784 10 O -0.585 6.585 11 C 0.015 3.985 12 N -0.466 5.466 13 C -0.010 4.010 14 C 0.129 3.871 15 H 0.070 0.930 16 O -0.560 6.560 17 C 0.039 3.961 18 O -0.388 6.388 19 C 0.128 3.872 20 H 0.075 0.925 21 C -0.138 4.138 22 C -0.113 4.113 23 C -0.082 4.082 24 C -0.076 4.076 25 C -0.132 4.132 26 C -0.120 4.120 27 C -0.141 4.141 28 C -0.118 4.118 29 C -0.100 4.100 30 C -0.013 4.013 31 H 0.274 0.726 32 H 0.383 0.617 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.057 0.943 37 H 0.381 0.619 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.069 0.931 44 H 0.081 0.919 45 H 0.095 0.905 46 H 0.146 0.854 47 H 0.145 0.855 48 H 0.132 0.868 49 H 0.111 0.889 50 H 0.064 0.936 51 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.646 -21.024 -18.546 28.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.177 4.177 3 Si 0.796 3.204 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.593 4.593 8 H 0.088 0.912 9 C 0.175 3.825 10 O -0.397 6.397 11 C -0.114 4.114 12 N -0.188 5.188 13 C -0.139 4.139 14 C 0.069 3.931 15 H 0.088 0.912 16 O -0.366 6.366 17 C -0.038 4.038 18 O -0.308 6.308 19 C 0.071 3.929 20 H 0.093 0.907 21 C -0.176 4.176 22 C -0.150 4.150 23 C -0.119 4.119 24 C -0.076 4.076 25 C -0.150 4.150 26 C -0.138 4.138 27 C -0.159 4.159 28 C -0.136 4.136 29 C -0.101 4.101 30 C -0.142 4.142 31 H 0.084 0.916 32 H 0.238 0.762 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.114 0.886 36 H 0.076 0.924 37 H 0.229 0.771 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.098 0.902 42 H 0.109 0.891 43 H 0.088 0.912 44 H 0.100 0.900 45 H 0.113 0.887 46 H 0.164 0.836 47 H 0.162 0.838 48 H 0.150 0.850 49 H 0.129 0.871 50 H 0.082 0.918 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 4.519 -21.641 -18.377 28.748 hybrid contribution 0.986 2.152 -0.232 2.379 sum 5.505 -19.489 -18.609 27.503 Atomic orbital electron populations 1.69387 1.07401 1.28704 1.50843 1.25891 0.95794 1.03037 0.92965 0.85354 0.78566 0.78106 0.78385 1.19809 1.20709 1.19081 1.21857 0.93938 0.91482 1.52033 0.91233 1.19761 0.85508 0.92118 0.85076 1.86017 1.45954 1.47814 1.59900 1.23977 0.95523 0.94686 0.97216 1.68817 1.27219 1.12306 1.10474 1.23342 0.96432 0.99084 0.95063 1.21575 0.93997 0.89418 0.88086 0.91188 1.86635 1.38341 1.48141 1.63467 1.23236 0.91825 0.96211 0.92519 1.88042 1.33809 1.62731 1.46219 1.20886 0.94267 0.91695 0.86043 0.90719 1.22030 1.02166 0.94350 0.99019 1.21521 0.97453 1.00217 0.95823 1.20580 0.97317 0.93100 1.00881 1.19919 0.97481 0.94640 0.95570 1.21471 0.97145 0.99373 0.96977 1.21428 0.99616 0.92503 1.00218 1.21343 0.99016 0.99461 0.96093 1.21264 0.97366 0.98260 0.96724 1.19642 0.99932 0.93701 0.96783 1.24552 0.99339 0.89435 1.00914 0.91607 0.76245 0.91100 0.89947 0.88557 0.92431 0.77079 0.90474 0.91477 0.91933 0.90235 0.89099 0.91186 0.90035 0.88701 0.83601 0.83761 0.85022 0.87105 0.91814 0.94058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.71 11.02 21.45 0.24 -50.47 16 2 C 0.02 1.19 5.39 84.65 0.46 1.64 16 3 Si 0.97 41.47 29.54 68.60 2.03 43.49 16 4 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 7 C -0.56 -29.58 8.68 25.60 0.22 -29.35 16 8 H 0.07 3.55 7.81 -2.91 -0.02 3.53 16 9 C 0.22 11.20 1.57 -11.20 -0.02 11.18 16 10 O -0.58 -33.40 13.54 -148.98 -2.02 -35.42 16 11 C 0.01 0.63 7.09 83.58 0.59 1.22 16 12 N -0.47 -19.32 6.20 -928.27 -5.75 -25.07 16 13 C -0.01 -0.31 4.48 86.30 0.39 0.08 16 14 C 0.13 3.85 3.52 30.59 0.11 3.96 16 15 H 0.07 2.52 8.14 -2.38 -0.02 2.50 16 16 O -0.56 -18.10 13.17 -144.37 -1.90 -20.00 16 17 C 0.04 0.88 5.34 71.98 0.38 1.26 16 18 O -0.39 -10.15 9.14 -144.37 -1.32 -11.46 16 19 C 0.13 2.63 2.60 29.73 0.08 2.71 16 20 H 0.08 1.36 7.84 -2.39 -0.02 1.34 16 21 C -0.14 -2.22 5.47 30.61 0.17 -2.05 16 22 C -0.11 -1.29 5.98 30.61 0.18 -1.11 16 23 C -0.08 -1.00 5.67 29.74 0.17 -0.84 16 24 C -0.08 -1.38 5.74 -19.86 -0.11 -1.49 16 25 C -0.13 -2.12 9.61 22.36 0.21 -1.90 16 26 C -0.12 -2.02 10.05 22.20 0.22 -1.80 16 27 C -0.14 -2.89 10.05 22.20 0.22 -2.66 16 28 C -0.12 -2.83 9.25 22.36 0.21 -2.63 16 29 C -0.10 -2.23 5.57 -19.86 -0.11 -2.34 16 30 C -0.01 -0.60 7.13 83.58 0.60 -0.01 16 31 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 32 H 0.38 22.40 6.33 -74.06 -0.47 21.93 16 33 H 0.07 3.01 8.14 -2.39 -0.02 3.00 16 34 H 0.08 3.14 7.87 -2.38 -0.02 3.12 16 35 H 0.10 2.40 8.08 -2.39 -0.02 2.38 16 36 H 0.06 1.69 7.30 -2.39 -0.02 1.67 16 37 H 0.38 8.97 9.05 -74.06 -0.67 8.30 16 38 H 0.08 1.32 7.73 -2.39 -0.02 1.30 16 39 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.06 1.20 8.10 -2.38 -0.02 1.18 16 41 H 0.08 1.08 7.81 -2.39 -0.02 1.06 16 42 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 43 H 0.07 0.76 8.10 -2.38 -0.02 0.74 16 44 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.09 0.79 8.12 -2.39 -0.02 0.77 16 46 H 0.15 1.51 8.05 -2.91 -0.02 1.48 16 47 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 48 H 0.13 2.27 8.06 -2.91 -0.02 2.25 16 49 H 0.11 2.84 7.67 -2.91 -0.02 2.82 16 50 H 0.06 2.89 7.37 -2.39 -0.02 2.87 16 51 H 0.04 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -67.77 407.63 -4.97 -72.74 By element: Atomic # 1 Polarization: 50.54 SS G_CDS: -0.21 Total: 50.33 kcal Atomic # 6 Polarization: -28.10 SS G_CDS: 3.97 Total: -24.13 kcal Atomic # 7 Polarization: -70.03 SS G_CDS: -5.52 Total: -75.54 kcal Atomic # 8 Polarization: -61.65 SS G_CDS: -5.24 Total: -66.89 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.49 kcal Total: -67.77 -4.97 -72.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515165297.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.327 kcal (2) G-P(sol) polarization free energy of solvation -67.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds