Wall clock time and date at job start Wed Apr 1 2020 04:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46501 * 109.47134 * 2 1 4 4 C 1.46495 * 120.00246 * 263.10889 * 3 2 1 5 5 C 1.52993 * 109.47156 * 269.99882 * 4 3 2 6 6 H 1.08997 * 109.47397 * 304.99554 * 5 4 3 7 7 C 1.53002 * 109.47365 * 65.00091 * 5 4 3 8 8 C 1.47205 * 109.47038 * 185.00004 * 5 4 3 9 9 N 5.69649 * 122.98875 * 310.13894 * 2 1 3 10 10 C 1.34781 * 119.99658 * 83.10718 * 3 2 1 11 11 O 1.21366 * 120.00054 * 184.12152 * 10 3 2 12 12 C 1.49301 * 120.00284 * 4.11732 * 10 3 2 13 13 O 1.21396 * 120.00161 * 354.27099 * 12 10 3 14 14 N 1.34776 * 120.00431 * 174.26647 * 12 10 3 15 15 C 1.39193 * 120.00355 * 180.02562 * 14 12 10 16 16 C 1.36220 * 126.27354 * 0.17246 * 15 14 12 17 17 C 1.39689 * 107.85625 * 180.24265 * 16 15 14 18 18 C 1.50708 * 125.76382 * 179.73828 * 17 16 15 19 19 N 1.30848 * 108.46367 * 359.75851 * 17 16 15 20 20 N 1.35857 * 126.27519 * 180.02562 * 15 14 12 21 21 C 1.46505 * 126.09472 * 0.02562 * 20 15 14 22 22 C 1.50703 * 109.46780 * 269.71479 * 21 20 15 23 23 H 1.07995 * 120.00519 * 359.97438 * 22 21 20 24 24 C 1.37881 * 119.99388 * 179.72309 * 22 21 20 25 25 N 1.31511 * 120.00322 * 0.27915 * 24 22 21 26 26 Si 1.86803 * 119.99510 * 180.27224 * 24 22 21 27 27 H 1.48503 * 109.47033 * 90.00454 * 26 24 22 28 28 H 1.48503 * 109.47212 * 210.00048 * 26 24 22 29 29 H 1.48498 * 109.47336 * 330.00507 * 26 24 22 30 30 H 1.09000 * 109.47079 * 60.00082 * 1 2 3 31 31 H 1.09000 * 109.46294 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46886 * 299.99585 * 1 2 3 33 33 H 1.09004 * 109.47487 * 240.00287 * 2 1 3 34 34 H 1.09000 * 109.47079 * 119.99918 * 2 1 3 35 35 H 1.09006 * 109.47106 * 30.00526 * 4 3 2 36 36 H 1.09007 * 109.47088 * 149.99389 * 4 3 2 37 37 H 1.08998 * 109.47299 * 180.02562 * 7 5 4 38 38 H 1.09001 * 109.46687 * 300.00423 * 7 5 4 39 39 H 1.09005 * 109.47100 * 59.99726 * 7 5 4 40 40 H 0.97005 * 119.99423 * 0.02562 * 14 12 10 41 41 H 1.07998 * 126.06574 * 359.97438 * 16 15 14 42 42 H 1.09002 * 109.47246 * 269.99261 * 18 17 16 43 43 H 1.08993 * 109.47493 * 30.00051 * 18 17 16 44 44 H 1.09006 * 109.46897 * 150.00094 * 18 17 16 45 45 H 1.08995 * 109.46996 * 149.71622 * 21 20 15 46 46 H 1.09006 * 109.47081 * 29.71267 * 21 20 15 47 47 H 0.97000 * 120.00091 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4061 2.0211 -1.2595 5 6 3.8912 1.7666 -1.5249 6 1 4.4761 2.1026 -0.6687 7 6 4.1210 0.2698 -1.7438 8 6 4.3091 2.5080 -2.7259 9 7 4.6317 3.0802 -3.6528 10 6 2.1109 2.0632 1.1588 11 8 2.4438 3.2303 1.1512 12 6 1.8038 1.3831 2.4520 13 8 1.3712 0.2488 2.4535 14 7 2.0070 2.0282 3.6177 15 6 1.7211 1.3939 4.8233 16 6 1.2374 0.1294 4.9738 17 6 1.0879 -0.1120 6.3415 18 6 0.5744 -1.3868 6.9599 19 7 1.4687 0.9558 6.9949 20 7 1.8761 1.9214 6.0656 21 6 2.3747 3.2633 6.3775 22 6 3.8722 3.2175 6.5400 23 1 4.3998 2.2824 6.4231 24 6 4.5693 4.3704 6.8328 25 7 3.9269 5.5090 6.9757 26 14 6.4265 4.3151 7.0267 27 1 7.0690 4.5570 5.7100 28 1 6.8554 5.3637 7.9869 29 1 6.8313 2.9808 7.5374 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8935 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.8146 1.6055 -2.0753 36 1 2.2278 3.0944 -1.1917 37 1 5.1791 0.0884 -1.9324 38 1 3.8114 -0.2791 -0.8545 39 1 3.5360 -0.0661 -2.6001 40 1 2.3524 2.9347 3.6165 41 1 1.0061 -0.5619 4.1769 42 1 -0.5085 -1.3272 7.0691 43 1 0.8290 -2.2302 6.3183 44 1 1.0312 -1.5249 7.9400 45 1 1.9193 3.6138 7.3036 46 1 2.1179 3.9440 5.5658 47 1 4.4173 6.3201 7.1821 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000525863214.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:20 Heat of formation + Delta-G solvation = 47.252142 kcal Electronic energy + Delta-G solvation = -30763.092133 eV Core-core repulsion = 26562.754016 eV Total energy + Delta-G solvation = -4200.338117 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.42735 -40.45625 -38.77715 -37.72803 -36.57270 -34.89873 -33.91805 -33.59283 -32.10638 -30.73341 -29.33493 -28.64093 -27.50299 -26.09301 -25.40269 -23.43890 -23.32505 -22.67632 -20.68024 -19.86070 -19.09955 -18.17847 -17.57241 -17.11431 -16.85311 -16.40465 -16.11092 -15.85129 -15.40126 -14.95082 -14.71496 -14.60710 -14.37962 -14.23408 -13.78321 -13.61279 -13.45090 -13.16356 -13.00363 -12.89859 -12.82080 -12.74531 -12.58276 -12.26288 -12.16894 -12.07571 -11.89165 -11.72109 -11.62475 -11.47637 -11.36793 -11.17925 -11.05315 -10.88315 -10.52471 -10.34111 -9.86202 -9.83483 -9.45067 -9.12088 -8.71618 -8.00930 -7.60441 -6.33041 -4.41894 1.13674 1.89332 2.40403 2.45340 2.57501 2.99411 3.14952 3.17637 3.24798 3.29434 3.49601 3.57695 3.69416 4.14501 4.25250 4.32275 4.41096 4.66646 4.75004 4.98816 5.00531 5.07227 5.22061 5.26158 5.27788 5.28929 5.41110 5.50174 5.56231 5.66387 5.72392 5.92892 5.95773 6.04165 6.08395 6.12766 6.13787 6.29578 6.48115 6.72959 6.79708 6.98456 7.20514 7.26377 7.41413 7.46812 7.59785 7.74124 7.78552 8.03715 8.53215 8.66530 9.25920 10.74355 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008470 B = 0.003536 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3305.015233 B = 7917.671012 C =10410.074489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.083 3.917 3 N -0.582 5.582 4 C 0.122 3.878 5 C -0.015 4.015 6 H 0.121 0.879 7 C -0.150 4.150 8 C 0.215 3.785 9 N -0.429 5.429 10 C 0.515 3.485 11 O -0.504 6.504 12 C 0.512 3.488 13 O -0.488 6.488 14 N -0.606 5.606 15 C 0.293 3.707 16 C -0.286 4.286 17 C 0.049 3.951 18 C -0.063 4.063 19 N -0.277 5.277 20 N -0.340 5.340 21 C 0.255 3.745 22 C -0.543 4.543 23 H 0.065 0.935 24 C 0.068 3.932 25 N -0.888 5.888 26 Si 0.906 3.094 27 H -0.277 1.277 28 H -0.282 1.282 29 H -0.271 1.271 30 H 0.049 0.951 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.120 0.880 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.428 0.572 41 H 0.164 0.836 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.066 0.934 45 H 0.058 0.942 46 H 0.046 0.954 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.931 -13.023 -15.469 21.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.038 4.038 3 N -0.316 5.316 4 C -0.002 4.002 5 C -0.037 4.037 6 H 0.138 0.862 7 C -0.208 4.208 8 C -0.104 4.104 9 N -0.105 5.105 10 C 0.297 3.703 11 O -0.378 6.378 12 C 0.293 3.707 13 O -0.363 6.363 14 N -0.254 5.254 15 C 0.071 3.929 16 C -0.318 4.318 17 C -0.116 4.116 18 C -0.121 4.121 19 N -0.103 5.103 20 N -0.126 5.126 21 C 0.138 3.862 22 C -0.581 4.581 23 H 0.083 0.917 24 C -0.136 4.136 25 N -0.525 5.525 26 Si 0.733 3.267 27 H -0.203 1.203 28 H -0.208 1.208 29 H -0.196 1.196 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.137 0.863 35 H 0.113 0.887 36 H 0.117 0.883 37 H 0.086 0.914 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.267 0.733 41 H 0.181 0.819 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.085 0.915 45 H 0.076 0.924 46 H 0.064 0.936 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.335 -11.415 -15.689 20.123 hybrid contribution 1.099 0.291 -0.308 1.178 sum -4.236 -11.124 -15.997 19.940 Atomic orbital electron populations 1.22090 0.95197 1.02633 1.02035 1.22401 0.95468 0.80597 1.05314 1.47712 1.63328 1.15350 1.05250 1.21495 0.92232 1.00829 0.85689 1.19304 0.98378 0.95275 0.90786 0.86155 1.21963 1.03271 0.92113 1.03484 1.28867 0.93749 0.93536 0.94231 1.81247 1.08340 1.09235 1.11680 1.19898 0.78963 0.86533 0.84887 1.90847 1.44914 1.15369 1.86705 1.19808 0.80062 0.86374 0.84464 1.90610 1.42481 1.17068 1.86102 1.42329 1.61377 1.19185 1.02472 1.17965 1.02105 0.92591 0.80250 1.21271 1.17513 0.96061 0.96923 1.22023 1.01099 0.95903 0.92556 1.20030 1.00366 0.91412 1.00320 1.77379 1.20439 0.98225 1.14227 1.49599 1.48242 1.14507 1.00265 1.19694 0.95343 0.72369 0.98841 1.21303 0.90550 0.95418 1.50861 0.91657 1.24930 0.99502 0.94865 0.94290 1.69908 1.36452 0.99303 1.46858 0.86354 0.83967 0.78159 0.78247 1.20254 1.20771 1.19600 0.93158 0.91227 0.91885 0.90135 0.86278 0.88651 0.88299 0.91358 0.89917 0.91468 0.73319 0.81891 0.91325 0.91070 0.91453 0.92384 0.93630 0.92099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 9.74 37.16 0.36 -0.81 16 2 C 0.08 0.57 4.56 -4.04 -0.02 0.55 16 3 N -0.58 -4.91 2.31 -174.25 -0.40 -5.32 16 4 C 0.12 0.82 4.85 -4.05 -0.02 0.80 16 5 C -0.01 -0.10 2.97 -93.41 -0.28 -0.37 16 6 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 7 C -0.15 -0.69 8.14 37.16 0.30 -0.39 16 8 C 0.21 1.96 14.65 -20.76 -0.30 1.66 16 9 N -0.43 -5.20 18.54 42.15 0.78 -4.42 16 10 C 0.52 6.29 7.67 -11.65 -0.09 6.20 16 11 O -0.50 -7.47 16.04 5.48 0.09 -7.38 16 12 C 0.51 7.21 7.62 -11.66 -0.09 7.12 16 13 O -0.49 -6.65 8.97 5.46 0.05 -6.60 16 14 N -0.61 -10.30 5.40 -11.80 -0.06 -10.37 16 15 C 0.29 5.78 7.68 -152.86 -1.17 4.60 16 16 C -0.29 -5.22 9.58 -39.77 -0.38 -5.60 16 17 C 0.05 0.91 7.20 -82.47 -0.59 0.31 16 18 C -0.06 -0.84 10.44 36.01 0.38 -0.46 16 19 N -0.28 -6.14 12.56 33.64 0.42 -5.71 16 20 N -0.34 -7.69 3.62 -61.46 -0.22 -7.91 16 21 C 0.26 6.30 6.02 -5.19 -0.03 6.27 16 22 C -0.54 -14.49 9.39 -34.44 -0.32 -14.81 16 23 H 0.07 1.80 7.81 -52.49 -0.41 1.39 16 24 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 25 N -0.89 -24.43 13.29 55.43 0.74 -23.70 16 26 Si 0.91 20.73 29.54 -169.99 -5.02 15.71 16 27 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 28 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 29 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.61 7.04 -51.93 -0.37 0.25 16 33 H 0.08 0.33 6.30 -51.93 -0.33 0.00 16 34 H 0.12 1.01 5.38 -51.93 -0.28 0.73 16 35 H 0.10 0.42 8.07 -51.93 -0.42 0.00 16 36 H 0.10 0.81 7.37 -51.93 -0.38 0.43 16 37 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.08 0.36 6.02 -51.93 -0.31 0.05 16 39 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 40 H 0.43 7.48 7.47 -40.82 -0.30 7.17 16 41 H 0.16 2.70 5.83 -52.49 -0.31 2.39 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.06 1.54 8.14 -51.93 -0.42 1.12 16 46 H 0.05 1.11 7.51 -51.93 -0.39 0.72 16 47 H 0.27 7.01 8.31 -40.82 -0.34 6.68 16 LS Contribution 397.94 15.07 6.00 6.00 Total: -1.00 -31.90 397.94 -6.43 -38.34 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -6.44 Total: 4.55 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: -2.36 Total: 6.80 kcal Atomic # 7 Polarization: -58.67 SS G_CDS: 1.25 Total: -57.42 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: 0.14 Total: -13.98 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.90 -6.43 -38.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000525863214.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.588 kcal (2) G-P(sol) polarization free energy of solvation -31.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds