Wall clock time and date at job start Wed Apr 1 2020 04:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46501 * 109.47134 * 2 1 4 4 C 1.46495 * 120.00246 * 263.10889 * 3 2 1 5 5 C 1.52993 * 109.47156 * 269.99882 * 4 3 2 6 6 H 1.08997 * 109.47397 * 304.99554 * 5 4 3 7 7 C 1.53002 * 109.47365 * 65.00091 * 5 4 3 8 8 C 1.47205 * 109.47038 * 185.00004 * 5 4 3 9 9 N 5.69649 * 122.98875 * 310.13894 * 2 1 3 10 10 C 1.34781 * 119.99658 * 83.10718 * 3 2 1 11 11 O 1.21366 * 120.00054 * 184.12152 * 10 3 2 12 12 C 1.49301 * 120.00284 * 4.11732 * 10 3 2 13 13 O 1.21396 * 120.00161 * 354.27099 * 12 10 3 14 14 N 1.34776 * 120.00431 * 174.26647 * 12 10 3 15 15 C 1.39193 * 120.00355 * 180.02562 * 14 12 10 16 16 C 1.36220 * 126.27354 * 0.17246 * 15 14 12 17 17 C 1.39689 * 107.85625 * 180.24265 * 16 15 14 18 18 C 1.50708 * 125.76382 * 179.73828 * 17 16 15 19 19 N 1.30848 * 108.46367 * 359.75851 * 17 16 15 20 20 N 1.35857 * 126.27519 * 180.02562 * 15 14 12 21 21 C 1.46505 * 126.09472 * 0.02562 * 20 15 14 22 22 C 1.50703 * 109.46780 * 269.71479 * 21 20 15 23 23 H 1.07995 * 120.00519 * 359.97438 * 22 21 20 24 24 C 1.37881 * 119.99388 * 179.72309 * 22 21 20 25 25 N 1.31511 * 120.00322 * 0.27915 * 24 22 21 26 26 Si 1.86803 * 119.99510 * 180.27224 * 24 22 21 27 27 H 1.48503 * 109.47033 * 90.00454 * 26 24 22 28 28 H 1.48503 * 109.47212 * 210.00048 * 26 24 22 29 29 H 1.48498 * 109.47336 * 330.00507 * 26 24 22 30 30 H 1.09000 * 109.47079 * 60.00082 * 1 2 3 31 31 H 1.09000 * 109.46294 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46886 * 299.99585 * 1 2 3 33 33 H 1.09004 * 109.47487 * 240.00287 * 2 1 3 34 34 H 1.09000 * 109.47079 * 119.99918 * 2 1 3 35 35 H 1.09006 * 109.47106 * 30.00526 * 4 3 2 36 36 H 1.09007 * 109.47088 * 149.99389 * 4 3 2 37 37 H 1.08998 * 109.47299 * 180.02562 * 7 5 4 38 38 H 1.09001 * 109.46687 * 300.00423 * 7 5 4 39 39 H 1.09005 * 109.47100 * 59.99726 * 7 5 4 40 40 H 0.97005 * 119.99423 * 0.02562 * 14 12 10 41 41 H 1.07998 * 126.06574 * 359.97438 * 16 15 14 42 42 H 1.09002 * 109.47246 * 269.99261 * 18 17 16 43 43 H 1.08993 * 109.47493 * 30.00051 * 18 17 16 44 44 H 1.09006 * 109.46897 * 150.00094 * 18 17 16 45 45 H 1.08995 * 109.46996 * 149.71622 * 21 20 15 46 46 H 1.09006 * 109.47081 * 29.71267 * 21 20 15 47 47 H 0.97000 * 120.00091 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4061 2.0211 -1.2595 5 6 3.8912 1.7666 -1.5249 6 1 4.4761 2.1026 -0.6687 7 6 4.1210 0.2698 -1.7438 8 6 4.3091 2.5080 -2.7259 9 7 4.6317 3.0802 -3.6528 10 6 2.1109 2.0632 1.1588 11 8 2.4438 3.2303 1.1512 12 6 1.8038 1.3831 2.4520 13 8 1.3712 0.2488 2.4535 14 7 2.0070 2.0282 3.6177 15 6 1.7211 1.3939 4.8233 16 6 1.2374 0.1294 4.9738 17 6 1.0879 -0.1120 6.3415 18 6 0.5744 -1.3868 6.9599 19 7 1.4687 0.9558 6.9949 20 7 1.8761 1.9214 6.0656 21 6 2.3747 3.2633 6.3775 22 6 3.8722 3.2175 6.5400 23 1 4.3998 2.2824 6.4231 24 6 4.5693 4.3704 6.8328 25 7 3.9269 5.5090 6.9757 26 14 6.4265 4.3151 7.0267 27 1 7.0690 4.5570 5.7100 28 1 6.8554 5.3637 7.9869 29 1 6.8313 2.9808 7.5374 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8935 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.8146 1.6055 -2.0753 36 1 2.2278 3.0944 -1.1917 37 1 5.1791 0.0884 -1.9324 38 1 3.8114 -0.2791 -0.8545 39 1 3.5360 -0.0661 -2.6001 40 1 2.3524 2.9347 3.6165 41 1 1.0061 -0.5619 4.1769 42 1 -0.5085 -1.3272 7.0691 43 1 0.8290 -2.2302 6.3183 44 1 1.0312 -1.5249 7.9400 45 1 1.9193 3.6138 7.3036 46 1 2.1179 3.9440 5.5658 47 1 4.4173 6.3201 7.1821 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000525863214.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:19 Heat of formation + Delta-G solvation = 27.651397 kcal Electronic energy + Delta-G solvation = -30763.942085 eV Core-core repulsion = 26562.754016 eV Total energy + Delta-G solvation = -4201.188069 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.65290 -41.70409 -39.85668 -38.57565 -37.44993 -36.21005 -35.63017 -34.36286 -33.80172 -31.37106 -30.84347 -30.07918 -28.23908 -27.78962 -26.27165 -24.81441 -24.02992 -23.97637 -21.89140 -21.27040 -20.25549 -18.90780 -18.86102 -18.60203 -18.20725 -17.76113 -17.15761 -16.86580 -16.55269 -16.26081 -15.97323 -15.80573 -15.44295 -15.29136 -14.69021 -14.63534 -14.47980 -14.42346 -14.10463 -14.01105 -13.86135 -13.57019 -13.52995 -13.38995 -13.35625 -13.09698 -12.99971 -12.88220 -12.70548 -12.66707 -12.32457 -12.27437 -12.21033 -12.13333 -11.96926 -11.75757 -11.62571 -11.33382 -10.76430 -10.45957 -9.93652 -9.62961 -9.10364 -8.36705 -6.54287 0.02241 0.84181 1.13541 1.36273 1.37431 1.48375 1.61952 1.72734 1.82671 1.89176 2.17046 2.27839 2.36944 2.91735 2.94194 3.08100 3.76519 3.84673 3.86146 4.14413 4.19479 4.24486 4.47633 4.51153 4.55042 4.67911 4.70168 4.71610 4.78607 4.84760 4.87852 4.90921 4.95676 4.97864 5.06913 5.18786 5.21677 5.24657 5.34045 5.41787 5.50390 5.52128 5.76156 5.84854 5.98638 6.03543 6.14185 6.46634 6.49935 6.60778 6.76753 7.01830 7.17803 8.69943 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008470 B = 0.003536 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3305.015233 B = 7917.671012 C =10410.074489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.080 3.920 3 N -0.563 5.563 4 C 0.119 3.881 5 C -0.009 4.009 6 H 0.113 0.887 7 C -0.148 4.148 8 C 0.242 3.758 9 N -0.483 5.483 10 C 0.518 3.482 11 O -0.537 6.537 12 C 0.513 3.487 13 O -0.479 6.479 14 N -0.618 5.618 15 C 0.290 3.710 16 C -0.287 4.287 17 C 0.058 3.942 18 C -0.061 4.061 19 N -0.326 5.326 20 N -0.369 5.369 21 C 0.273 3.727 22 C -0.556 4.556 23 H 0.051 0.949 24 C 0.025 3.975 25 N -0.915 5.915 26 Si 0.969 3.031 27 H -0.267 1.267 28 H -0.274 1.274 29 H -0.273 1.273 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.033 0.967 33 H 0.121 0.879 34 H 0.106 0.894 35 H 0.131 0.869 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.422 0.578 41 H 0.184 0.816 42 H 0.089 0.911 43 H 0.099 0.901 44 H 0.069 0.931 45 H 0.028 0.972 46 H 0.041 0.959 47 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.923 -15.710 -17.357 24.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.040 4.040 3 N -0.295 5.295 4 C -0.004 4.004 5 C -0.032 4.032 6 H 0.131 0.869 7 C -0.206 4.206 8 C -0.076 4.076 9 N -0.160 5.160 10 C 0.300 3.700 11 O -0.414 6.414 12 C 0.295 3.705 13 O -0.352 6.352 14 N -0.266 5.266 15 C 0.069 3.931 16 C -0.318 4.318 17 C -0.107 4.107 18 C -0.119 4.119 19 N -0.151 5.151 20 N -0.155 5.155 21 C 0.154 3.846 22 C -0.594 4.594 23 H 0.069 0.931 24 C -0.176 4.176 25 N -0.553 5.553 26 Si 0.793 3.207 27 H -0.192 1.192 28 H -0.199 1.199 29 H -0.197 1.197 30 H 0.081 0.919 31 H 0.102 0.898 32 H 0.052 0.948 33 H 0.139 0.861 34 H 0.124 0.876 35 H 0.149 0.851 36 H 0.102 0.898 37 H 0.087 0.913 38 H 0.108 0.892 39 H 0.105 0.895 40 H 0.260 0.740 41 H 0.201 0.799 42 H 0.108 0.892 43 H 0.118 0.882 44 H 0.088 0.912 45 H 0.046 0.954 46 H 0.059 0.941 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.352 -14.161 -17.630 23.238 hybrid contribution 0.991 0.986 0.197 1.412 sum -4.361 -13.175 -17.433 22.282 Atomic orbital electron populations 1.22076 0.95157 1.03315 1.01227 1.22579 0.95394 0.79366 1.06673 1.47778 1.61417 1.15791 1.04498 1.21692 0.92896 1.00317 0.85466 1.19383 0.97938 0.96548 0.89293 0.86913 1.22003 1.03891 0.90037 1.04654 1.29217 0.92276 0.92292 0.93789 1.81278 1.10107 1.10988 1.13580 1.19578 0.79231 0.86164 0.85065 1.90845 1.46965 1.16629 1.86951 1.20256 0.79353 0.86424 0.84424 1.90599 1.41628 1.16764 1.86174 1.42523 1.62353 1.19169 1.02537 1.18390 1.01374 0.93122 0.80239 1.21568 1.17195 0.95623 0.97417 1.22932 0.98624 0.96360 0.92817 1.20247 1.01462 0.89524 1.00674 1.77333 1.22894 0.99445 1.15475 1.49334 1.50407 1.14191 1.01578 1.19180 0.94285 0.74011 0.97134 1.21425 0.91636 0.95027 1.51287 0.93060 1.25722 1.03873 0.94377 0.93676 1.69995 1.38170 0.99877 1.47287 0.85386 0.78640 0.78047 0.78647 1.19168 1.19945 1.19743 0.91872 0.89834 0.94794 0.86099 0.87602 0.85067 0.89771 0.91297 0.89172 0.89491 0.73992 0.79881 0.89225 0.88209 0.91214 0.95366 0.94120 0.91715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.74 71.98 0.70 -1.12 16 2 C 0.08 0.81 4.56 86.38 0.39 1.21 16 3 N -0.56 -8.19 2.31 -823.55 -1.91 -10.10 16 4 C 0.12 1.30 4.85 86.38 0.42 1.72 16 5 C -0.01 -0.10 2.97 -12.60 -0.04 -0.13 16 6 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 7 C -0.15 -0.83 8.14 71.98 0.59 -0.24 16 8 C 0.24 4.06 14.65 89.44 1.31 5.37 16 9 N -0.48 -11.37 18.54 20.01 0.37 -11.00 16 10 C 0.52 12.31 7.67 87.22 0.67 12.98 16 11 O -0.54 -16.10 16.04 -3.30 -0.05 -16.16 16 12 C 0.51 14.28 7.62 87.22 0.66 14.94 16 13 O -0.48 -12.34 8.97 -3.39 -0.03 -12.37 16 14 N -0.62 -21.59 5.40 -309.58 -1.67 -23.26 16 15 C 0.29 11.68 7.68 131.25 1.01 12.69 16 16 C -0.29 -10.24 9.58 22.15 0.21 -10.03 16 17 C 0.06 2.11 7.20 43.06 0.31 2.42 16 18 C -0.06 -1.47 10.44 71.24 0.74 -0.73 16 19 N -0.33 -14.82 12.56 -47.49 -0.60 -15.42 16 20 N -0.37 -17.38 3.62 -348.37 -1.26 -18.64 16 21 C 0.27 14.27 6.02 85.63 0.52 14.79 16 22 C -0.56 -30.77 9.39 25.60 0.24 -30.53 16 23 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 24 C 0.03 1.36 5.46 84.66 0.46 1.83 16 25 N -0.92 -51.61 13.29 21.45 0.28 -51.33 16 26 Si 0.97 42.91 29.54 68.60 2.03 44.94 16 27 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 28 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 29 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.03 0.59 7.04 -2.39 -0.02 0.58 16 33 H 0.12 0.34 6.30 -2.39 -0.02 0.33 16 34 H 0.11 1.46 5.38 -2.42 -0.01 1.45 16 35 H 0.13 0.57 8.07 -2.38 -0.02 0.55 16 36 H 0.08 1.26 7.37 -2.38 -0.02 1.24 16 37 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 38 H 0.09 0.41 6.02 -2.39 -0.01 0.40 16 39 H 0.09 0.19 8.14 -2.38 -0.02 0.17 16 40 H 0.42 15.60 7.47 -92.70 -0.69 14.91 16 41 H 0.18 5.67 5.83 -2.91 -0.02 5.65 16 42 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 45 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.04 2.12 7.51 -2.38 -0.02 2.10 16 47 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -72.79 397.94 5.69 -67.10 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: 0.33 Total: 21.07 kcal Atomic # 6 Polarization: 16.97 SS G_CDS: 8.20 Total: 25.17 kcal Atomic # 7 Polarization: -124.97 SS G_CDS: -4.78 Total: -129.75 kcal Atomic # 8 Polarization: -28.45 SS G_CDS: -0.08 Total: -28.53 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -72.79 5.69 -67.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000525863214.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.753 kcal (2) G-P(sol) polarization free energy of solvation -72.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds