Wall clock time and date at job start Wed Apr 1 2020 05:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46001 * 118.53977 * 2 1 4 4 C 1.52984 * 110.04100 * 161.84327 * 3 2 1 5 5 N 1.47182 * 108.73544 * 50.28817 * 4 3 2 6 6 C 1.38630 * 111.00508 * 167.63375 * 5 4 3 7 7 C 1.39178 * 120.47925 * 66.56869 * 6 5 4 8 8 C 1.39126 * 118.26536 * 179.73818 * 7 6 5 9 9 N 1.38627 * 120.48639 * 180.26219 * 8 7 6 10 10 C 1.47846 * 110.99755 * 301.12109 * 9 8 7 11 11 C 1.54907 * 104.79583 * 213.63504 * 10 9 8 12 12 C 1.55145 * 101.65481 * 37.07426 * 11 10 9 13 13 O 1.42902 * 110.70443 * 82.72351 * 12 11 10 14 14 C 1.50695 * 110.85499 * 205.89262 * 12 11 10 15 15 H 1.08002 * 119.99775 * 113.68513 * 14 12 11 16 16 C 1.37875 * 120.00158 * 293.67998 * 14 12 11 17 17 N 1.31514 * 119.99677 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99986 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47197 * 60.00313 * 18 16 14 20 20 H 1.48502 * 109.47123 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.47115 * 299.99789 * 18 16 14 22 22 C 1.47444 * 111.00287 * 180.28289 * 9 8 7 23 23 N 1.33205 * 119.02792 * 0.53527 * 8 7 6 24 24 C 1.31721 * 120.88010 * 359.72846 * 23 8 7 25 25 N 1.31757 * 121.91576 * 359.97438 * 24 23 8 26 26 C 1.46903 * 110.17525 * 291.00465 * 5 4 3 27 27 C 1.33576 * 118.57170 * 180.09122 * 2 1 3 28 28 O 1.21277 * 118.52295 * 1.66958 * 27 2 1 29 29 H 1.09002 * 109.46990 * 89.99813 * 1 2 3 30 30 H 1.08998 * 109.47272 * 210.00241 * 1 2 3 31 31 H 1.09001 * 109.46612 * 330.00240 * 1 2 3 32 32 H 1.08991 * 109.38100 * 41.66363 * 3 2 1 33 33 H 1.09005 * 109.37700 * 282.01059 * 3 2 1 34 34 H 1.09005 * 109.59129 * 290.51326 * 4 3 2 35 35 H 1.09001 * 109.59496 * 170.06853 * 4 3 2 36 36 H 1.07995 * 120.86622 * 359.97438 * 7 6 5 37 37 H 1.09000 * 110.37689 * 332.46440 * 10 9 8 38 38 H 1.08996 * 110.37413 * 94.81102 * 10 9 8 39 39 H 1.08998 * 110.99298 * 278.97858 * 11 10 9 40 40 H 1.09002 * 111.02139 * 155.17454 * 11 10 9 41 41 H 0.96699 * 113.99581 * 66.41187 * 13 12 11 42 42 H 0.97003 * 119.99483 * 179.97438 * 17 16 14 43 43 H 1.09001 * 109.89131 * 242.66238 * 22 9 8 44 44 H 1.09008 * 109.88856 * 3.84883 * 22 9 8 45 45 H 1.08006 * 119.04059 * 179.97438 * 24 23 8 46 46 H 1.09002 * 109.38835 * 170.45256 * 26 5 4 47 47 H 1.08996 * 109.38597 * 290.24813 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1626 1.2826 0.0000 4 6 3.6127 1.0907 0.4479 5 7 4.2094 -0.0018 -0.3375 6 6 5.5856 -0.0370 -0.1741 7 6 6.1420 -0.3612 1.0598 8 6 7.5286 -0.3883 1.1706 9 7 8.1315 -0.7106 2.3765 10 6 7.7174 0.2258 3.4430 11 6 8.9603 0.3580 4.3581 12 6 10.1161 0.3229 3.3238 13 8 10.3209 1.6159 2.7509 14 6 11.3863 -0.1852 3.9557 15 1 11.8056 -1.1296 3.6413 16 6 12.0132 0.5555 4.9352 17 7 11.5023 1.7052 5.3183 18 14 13.5881 -0.0741 5.7180 19 1 14.6290 -0.2395 4.6720 20 1 14.0586 0.8998 6.7357 21 1 13.3282 -1.3831 6.3694 22 6 9.6008 -0.6696 2.2603 23 7 8.2682 -0.0945 0.1025 24 6 7.7035 0.2129 -1.0471 25 7 6.3945 0.2437 -1.1940 26 6 3.6017 -1.2856 0.0372 27 6 2.1039 -1.1731 -0.0019 28 8 1.4454 -2.1910 -0.0345 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3632 0.8900 0.5138 32 1 1.6606 1.9673 0.6835 33 1 2.1474 1.7025 -1.0058 34 1 3.6373 0.8351 1.5072 35 1 4.1724 2.0106 0.2786 36 1 5.5137 -0.5896 1.9080 37 1 7.4552 1.1943 3.0169 38 1 6.8763 -0.1839 4.0023 39 1 9.0282 -0.4829 5.0482 40 1 8.9489 1.3044 4.8988 41 1 10.6449 2.2770 3.3780 42 1 11.9432 2.2261 6.0077 43 1 10.0153 -1.6604 2.4461 44 1 9.8847 -0.3272 1.2651 45 1 8.3317 0.4465 -1.8940 46 1 3.9250 -2.0568 -0.6621 47 1 3.9181 -1.5553 1.0448 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591975713.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:22 Heat of formation + Delta-G solvation = 18.395129 kcal Electronic energy + Delta-G solvation = -31105.002525 eV Core-core repulsion = 26903.413074 eV Total energy + Delta-G solvation = -4201.589451 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.55134 -40.57614 -38.74359 -37.60777 -35.86942 -35.14199 -32.64052 -32.16347 -31.52624 -30.35437 -29.05041 -28.73727 -28.00624 -25.75011 -24.91115 -24.26410 -23.71120 -22.25832 -20.62398 -19.77143 -18.98434 -18.04648 -17.48957 -17.40880 -17.06391 -16.72646 -16.27299 -15.57779 -15.43426 -15.23906 -15.00996 -14.85877 -14.36447 -14.26626 -14.14144 -13.97697 -13.70549 -13.33288 -13.08300 -12.90814 -12.51277 -12.39605 -12.25744 -12.13944 -11.85480 -11.79945 -11.38304 -11.32854 -10.95777 -10.83672 -10.63274 -10.53445 -10.40892 -10.25448 -10.07625 -9.79471 -9.48011 -9.24744 -9.12496 -8.79012 -8.69322 -8.24256 -8.11198 -6.31205 -4.38246 0.91827 1.19528 2.24488 2.55657 2.90432 3.19625 3.24549 3.27869 3.66307 3.96351 4.07195 4.21508 4.23857 4.37775 4.55410 4.64439 4.71169 4.84269 4.91832 4.95258 5.01898 5.12707 5.13380 5.19550 5.25990 5.33805 5.41616 5.47489 5.54119 5.68760 5.84048 5.88826 5.94678 5.97991 6.17174 6.20167 6.50565 6.64705 6.76102 6.86050 6.90954 6.98054 7.23079 7.32482 7.40837 7.47128 7.71934 7.75683 8.00528 8.31394 8.63171 9.30010 9.43214 10.76418 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.023011 B = 0.002382 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.542506 B =11749.705819 C =12078.979715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.607 5.607 3 C 0.121 3.879 4 C 0.044 3.956 5 N -0.487 5.487 6 C 0.357 3.643 7 C -0.275 4.275 8 C 0.381 3.619 9 N -0.471 5.471 10 C 0.052 3.948 11 C -0.134 4.134 12 C 0.242 3.758 13 O -0.587 6.587 14 C -0.532 4.532 15 H 0.064 0.936 16 C 0.071 3.929 17 N -0.900 5.900 18 Si 0.903 3.097 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.275 1.275 22 C 0.042 3.958 23 N -0.544 5.544 24 C 0.332 3.668 25 N -0.530 5.530 26 C 0.047 3.953 27 C 0.527 3.473 28 O -0.546 6.546 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.058 0.942 35 H 0.103 0.897 36 H 0.140 0.860 37 H 0.049 0.951 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.383 0.617 42 H 0.269 0.731 43 H 0.084 0.916 44 H 0.100 0.900 45 H 0.199 0.801 46 H 0.119 0.881 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.760 1.609 -7.494 19.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.340 5.340 3 C -0.002 4.002 4 C -0.084 4.084 5 N -0.211 5.211 6 C 0.120 3.880 7 C -0.304 4.304 8 C 0.140 3.860 9 N -0.187 5.187 10 C -0.072 4.072 11 C -0.172 4.172 12 C 0.201 3.799 13 O -0.397 6.397 14 C -0.570 4.570 15 H 0.082 0.918 16 C -0.131 4.131 17 N -0.540 5.540 18 Si 0.730 3.270 19 H -0.200 1.200 20 H -0.212 1.212 21 H -0.201 1.201 22 C -0.084 4.084 23 N -0.264 5.264 24 C 0.042 3.958 25 N -0.248 5.248 26 C -0.083 4.083 27 C 0.315 3.685 28 O -0.423 6.423 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.076 0.924 35 H 0.121 0.879 36 H 0.157 0.843 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.235 0.765 42 H 0.079 0.921 43 H 0.103 0.897 44 H 0.118 0.882 45 H 0.215 0.785 46 H 0.137 0.863 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -17.947 0.703 -8.975 20.079 hybrid contribution 0.966 0.320 2.359 2.569 sum -16.982 1.023 -6.616 18.254 Atomic orbital electron populations 1.21716 0.78948 1.03299 1.02279 1.47309 1.07533 1.06171 1.72986 1.21577 0.90920 0.84778 1.02972 1.22592 0.94723 0.95240 0.95795 1.59067 1.00904 1.04249 1.56861 1.19352 0.89286 0.91542 0.87827 1.22645 0.95997 1.11395 1.00347 1.20255 0.89490 0.84826 0.91424 1.60545 1.11309 1.44944 1.01895 1.23171 1.00236 0.92344 0.91471 1.23295 0.93106 1.02698 0.98144 1.19605 0.92082 0.81323 0.86868 1.86126 1.88952 1.22144 1.42451 1.21516 1.08682 1.06508 1.20314 0.91807 1.25003 0.97668 0.94717 0.95750 1.69568 1.40124 1.13096 1.31222 0.86473 0.82942 0.78646 0.78907 1.19987 1.21151 1.20069 1.23135 0.81528 1.00588 1.03118 1.68437 1.40947 1.16157 1.00879 1.24804 0.87662 0.89375 0.93995 1.68051 1.05499 1.18662 1.32617 1.22414 0.90503 0.91959 1.03410 1.19852 0.89781 0.83105 0.75796 1.90746 1.66448 1.34684 1.50409 0.92407 0.90250 0.91039 0.89491 0.90182 0.92400 0.87875 0.84261 0.93219 0.90968 0.91159 0.89979 0.76497 0.92115 0.89744 0.88170 0.78478 0.86270 0.89773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.55 10.29 59.85 0.62 1.17 16 2 N -0.61 -5.34 3.22 -182.52 -0.59 -5.93 16 3 C 0.12 0.78 6.62 -4.32 -0.03 0.75 16 4 C 0.04 0.36 5.24 -3.68 -0.02 0.34 16 5 N -0.49 -5.38 4.78 -174.48 -0.83 -6.22 16 6 C 0.36 4.77 5.72 -154.71 -0.88 3.88 16 7 C -0.27 -3.88 8.08 -38.90 -0.31 -4.19 16 8 C 0.38 6.56 6.16 -154.70 -0.95 5.61 16 9 N -0.47 -8.79 5.20 -169.89 -0.88 -9.68 16 10 C 0.05 0.94 6.12 -2.30 -0.01 0.93 16 11 C -0.13 -2.85 5.67 -24.59 -0.14 -2.99 16 12 C 0.24 5.72 0.85 -89.95 -0.08 5.65 16 13 O -0.59 -14.77 13.08 -35.23 -0.46 -15.23 16 14 C -0.53 -13.69 8.22 -34.44 -0.28 -13.97 16 15 H 0.06 1.63 7.53 -52.49 -0.40 1.24 16 16 C 0.07 1.80 5.28 -17.82 -0.09 1.70 16 17 N -0.90 -23.00 10.69 55.43 0.59 -22.41 16 18 Si 0.90 20.05 29.54 -169.99 -5.02 15.03 16 19 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 22 C 0.04 0.89 6.12 -2.84 -0.02 0.88 16 23 N -0.54 -9.49 8.10 -13.88 -0.11 -9.61 16 24 C 0.33 4.84 12.28 -92.25 -1.13 3.71 16 25 N -0.53 -7.70 10.47 -13.88 -0.15 -7.85 16 26 C 0.05 0.51 5.40 -5.19 -0.03 0.48 16 27 C 0.53 6.09 7.56 -11.73 -0.09 6.00 16 28 O -0.55 -8.10 16.32 5.56 0.09 -8.01 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.66 7.26 -51.93 -0.38 0.28 16 31 H 0.07 0.30 7.92 -51.93 -0.41 -0.11 16 32 H 0.09 0.34 7.98 -51.93 -0.41 -0.07 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.45 7.95 -51.93 -0.41 0.04 16 35 H 0.10 0.83 8.03 -51.93 -0.42 0.41 16 36 H 0.14 1.72 7.16 -52.49 -0.38 1.35 16 37 H 0.05 0.90 7.78 -51.93 -0.40 0.50 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.07 1.53 8.05 -51.93 -0.42 1.11 16 40 H 0.08 1.84 7.76 -51.93 -0.40 1.44 16 41 H 0.38 9.84 6.98 45.56 0.32 10.15 16 42 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 43 H 0.08 1.81 7.63 -51.93 -0.40 1.41 16 44 H 0.10 2.23 5.87 -51.92 -0.30 1.93 16 45 H 0.20 2.20 8.06 -52.48 -0.42 1.78 16 46 H 0.12 1.34 8.14 -51.93 -0.42 0.92 16 47 H 0.08 0.85 6.75 -51.93 -0.35 0.50 16 LS Contribution 375.92 15.07 5.67 5.67 Total: -1.00 -30.58 375.92 -11.16 -41.75 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -6.01 Total: 12.54 kcal Atomic # 6 Polarization: 13.40 SS G_CDS: -3.46 Total: 9.94 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: -1.97 Total: -61.69 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -0.37 Total: -23.23 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.58 -11.16 -41.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591975713.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.144 kcal (2) G-P(sol) polarization free energy of solvation -30.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds