Wall clock time and date at job start Wed Apr 1 2020 05:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46001 * 118.53977 * 2 1 4 4 C 1.52984 * 110.04100 * 161.84327 * 3 2 1 5 5 N 1.47182 * 108.73544 * 50.28817 * 4 3 2 6 6 C 1.38630 * 111.00508 * 167.63375 * 5 4 3 7 7 C 1.39178 * 120.47925 * 66.56869 * 6 5 4 8 8 C 1.39126 * 118.26536 * 179.73818 * 7 6 5 9 9 N 1.38627 * 120.48639 * 180.26219 * 8 7 6 10 10 C 1.47846 * 110.99755 * 301.12109 * 9 8 7 11 11 C 1.54907 * 104.79583 * 213.63504 * 10 9 8 12 12 C 1.55145 * 101.65481 * 37.07426 * 11 10 9 13 13 O 1.42902 * 110.70443 * 82.72351 * 12 11 10 14 14 C 1.50695 * 110.85499 * 205.89262 * 12 11 10 15 15 H 1.08002 * 119.99775 * 113.68513 * 14 12 11 16 16 C 1.37875 * 120.00158 * 293.67998 * 14 12 11 17 17 N 1.31514 * 119.99677 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99986 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47197 * 60.00313 * 18 16 14 20 20 H 1.48502 * 109.47123 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.47115 * 299.99789 * 18 16 14 22 22 C 1.47444 * 111.00287 * 180.28289 * 9 8 7 23 23 N 1.33205 * 119.02792 * 0.53527 * 8 7 6 24 24 C 1.31721 * 120.88010 * 359.72846 * 23 8 7 25 25 N 1.31757 * 121.91576 * 359.97438 * 24 23 8 26 26 C 1.46903 * 110.17525 * 291.00465 * 5 4 3 27 27 C 1.33576 * 118.57170 * 180.09122 * 2 1 3 28 28 O 1.21277 * 118.52295 * 1.66958 * 27 2 1 29 29 H 1.09002 * 109.46990 * 89.99813 * 1 2 3 30 30 H 1.08998 * 109.47272 * 210.00241 * 1 2 3 31 31 H 1.09001 * 109.46612 * 330.00240 * 1 2 3 32 32 H 1.08991 * 109.38100 * 41.66363 * 3 2 1 33 33 H 1.09005 * 109.37700 * 282.01059 * 3 2 1 34 34 H 1.09005 * 109.59129 * 290.51326 * 4 3 2 35 35 H 1.09001 * 109.59496 * 170.06853 * 4 3 2 36 36 H 1.07995 * 120.86622 * 359.97438 * 7 6 5 37 37 H 1.09000 * 110.37689 * 332.46440 * 10 9 8 38 38 H 1.08996 * 110.37413 * 94.81102 * 10 9 8 39 39 H 1.08998 * 110.99298 * 278.97858 * 11 10 9 40 40 H 1.09002 * 111.02139 * 155.17454 * 11 10 9 41 41 H 0.96699 * 113.99581 * 66.41187 * 13 12 11 42 42 H 0.97003 * 119.99483 * 179.97438 * 17 16 14 43 43 H 1.09001 * 109.89131 * 242.66238 * 22 9 8 44 44 H 1.09008 * 109.88856 * 3.84883 * 22 9 8 45 45 H 1.08006 * 119.04059 * 179.97438 * 24 23 8 46 46 H 1.09002 * 109.38835 * 170.45256 * 26 5 4 47 47 H 1.08996 * 109.38597 * 290.24813 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1626 1.2826 0.0000 4 6 3.6127 1.0907 0.4479 5 7 4.2094 -0.0018 -0.3375 6 6 5.5856 -0.0370 -0.1741 7 6 6.1420 -0.3612 1.0598 8 6 7.5286 -0.3883 1.1706 9 7 8.1315 -0.7106 2.3765 10 6 7.7174 0.2258 3.4430 11 6 8.9603 0.3580 4.3581 12 6 10.1161 0.3229 3.3238 13 8 10.3209 1.6159 2.7509 14 6 11.3863 -0.1852 3.9557 15 1 11.8056 -1.1296 3.6413 16 6 12.0132 0.5555 4.9352 17 7 11.5023 1.7052 5.3183 18 14 13.5881 -0.0741 5.7180 19 1 14.6290 -0.2395 4.6720 20 1 14.0586 0.8998 6.7357 21 1 13.3282 -1.3831 6.3694 22 6 9.6008 -0.6696 2.2603 23 7 8.2682 -0.0945 0.1025 24 6 7.7035 0.2129 -1.0471 25 7 6.3945 0.2437 -1.1940 26 6 3.6017 -1.2856 0.0372 27 6 2.1039 -1.1731 -0.0019 28 8 1.4454 -2.1910 -0.0345 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3632 0.8900 0.5138 32 1 1.6606 1.9673 0.6835 33 1 2.1474 1.7025 -1.0058 34 1 3.6373 0.8351 1.5072 35 1 4.1724 2.0106 0.2786 36 1 5.5137 -0.5896 1.9080 37 1 7.4552 1.1943 3.0169 38 1 6.8763 -0.1839 4.0023 39 1 9.0282 -0.4829 5.0482 40 1 8.9489 1.3044 4.8988 41 1 10.6449 2.2770 3.3780 42 1 11.9432 2.2261 6.0077 43 1 10.0153 -1.6604 2.4461 44 1 9.8847 -0.3272 1.2651 45 1 8.3317 0.4465 -1.8940 46 1 3.9250 -2.0568 -0.6621 47 1 3.9181 -1.5553 1.0448 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591975713.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:21 Heat of formation + Delta-G solvation = -3.659655 kcal Electronic energy + Delta-G solvation = -31105.958892 eV Core-core repulsion = 26903.413074 eV Total energy + Delta-G solvation = -4202.545818 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.62722 -41.53763 -40.16931 -38.63282 -36.94358 -36.54180 -34.13227 -33.92113 -32.71427 -31.11952 -30.48530 -30.15179 -29.12865 -26.83718 -26.29031 -25.30235 -24.71099 -23.46962 -22.06790 -21.42244 -19.80051 -19.21488 -19.09494 -18.48255 -18.22247 -17.66323 -17.12333 -16.94524 -16.62082 -16.56220 -16.28173 -16.04761 -15.78906 -15.58463 -15.35520 -15.07302 -14.75318 -14.46080 -14.10480 -13.93322 -13.80875 -13.51752 -13.45573 -13.22429 -13.09050 -13.01372 -12.96760 -12.66754 -12.45641 -12.36925 -12.30757 -12.13689 -11.95904 -11.57464 -11.26944 -11.16909 -10.84763 -10.63540 -10.46550 -10.13398 -9.84566 -9.75417 -9.53082 -8.24336 -6.38096 -0.17722 -0.02389 1.38336 1.42302 1.43854 1.50919 1.85542 2.03155 2.36881 2.42652 2.75632 3.00968 3.18007 3.32994 3.51279 3.58798 3.72891 3.82493 3.92765 3.99659 4.08748 4.19599 4.20291 4.27080 4.32121 4.37132 4.42784 4.51437 4.56373 4.62407 4.65231 4.72989 4.87061 4.94915 4.95580 5.08202 5.20468 5.24164 5.31152 5.44756 5.49808 5.51563 5.66695 5.77813 6.00473 6.07076 6.23005 6.24694 6.65136 6.94652 7.14804 7.32636 7.44238 8.81380 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.023011 B = 0.002382 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.542506 B =11749.705819 C =12078.979715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.602 5.602 3 C 0.122 3.878 4 C 0.039 3.961 5 N -0.491 5.491 6 C 0.365 3.635 7 C -0.264 4.264 8 C 0.356 3.644 9 N -0.471 5.471 10 C 0.064 3.936 11 C -0.126 4.126 12 C 0.227 3.773 13 O -0.595 6.595 14 C -0.557 4.557 15 H 0.055 0.945 16 C 0.033 3.967 17 N -0.912 5.912 18 Si 0.959 3.041 19 H -0.277 1.277 20 H -0.280 1.280 21 H -0.272 1.272 22 C 0.051 3.949 23 N -0.575 5.575 24 C 0.330 3.670 25 N -0.536 5.536 26 C 0.051 3.949 27 C 0.523 3.477 28 O -0.588 6.588 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.106 0.894 32 H 0.123 0.877 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.108 0.892 36 H 0.160 0.840 37 H 0.047 0.953 38 H 0.107 0.893 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.377 0.623 42 H 0.271 0.729 43 H 0.077 0.923 44 H 0.089 0.911 45 H 0.226 0.774 46 H 0.109 0.891 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.482 2.476 -7.469 21.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.334 5.334 3 C 0.000 4.000 4 C -0.088 4.088 5 N -0.215 5.215 6 C 0.128 3.872 7 C -0.292 4.292 8 C 0.117 3.883 9 N -0.187 5.187 10 C -0.061 4.061 11 C -0.165 4.165 12 C 0.187 3.813 13 O -0.405 6.405 14 C -0.595 4.595 15 H 0.073 0.927 16 C -0.168 4.168 17 N -0.552 5.552 18 Si 0.785 3.215 19 H -0.202 1.202 20 H -0.206 1.206 21 H -0.197 1.197 22 C -0.075 4.075 23 N -0.295 5.295 24 C 0.040 3.960 25 N -0.254 5.254 26 C -0.079 4.079 27 C 0.311 3.689 28 O -0.469 6.469 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.124 0.876 32 H 0.141 0.859 33 H 0.105 0.895 34 H 0.086 0.914 35 H 0.126 0.874 36 H 0.177 0.823 37 H 0.066 0.934 38 H 0.125 0.875 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.228 0.772 42 H 0.080 0.920 43 H 0.095 0.905 44 H 0.107 0.893 45 H 0.242 0.758 46 H 0.127 0.873 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -19.701 1.611 -8.968 21.706 hybrid contribution 1.428 0.127 2.253 2.670 sum -18.273 1.737 -6.715 19.545 Atomic orbital electron populations 1.21864 0.77733 1.04142 1.02759 1.47454 1.08497 1.06190 1.71214 1.21785 0.89818 0.84008 1.04384 1.22780 0.95650 0.94301 0.96039 1.59178 0.99507 1.05095 1.57759 1.19574 0.90282 0.90094 0.87244 1.22752 0.94696 1.10409 1.01356 1.20400 0.90670 0.86379 0.90880 1.60609 1.09408 1.45713 1.02997 1.23107 0.99475 0.92648 0.90843 1.23063 0.94128 1.01445 0.97874 1.19818 0.92369 0.80889 0.88237 1.86119 1.88994 1.22704 1.42651 1.21782 1.10093 1.06571 1.21103 0.92688 1.25635 1.00123 0.94961 0.96076 1.69641 1.40851 1.13496 1.31257 0.85601 0.79662 0.78274 0.78010 1.20221 1.20557 1.19706 1.22860 0.83680 0.99318 1.01670 1.68380 1.42088 1.17230 1.01807 1.25334 0.88109 0.88574 0.93938 1.68146 1.05576 1.18644 1.32989 1.22335 0.90296 0.91664 1.03600 1.19925 0.89837 0.83444 0.75690 1.90728 1.67145 1.36255 1.52747 0.92124 0.91998 0.87589 0.85875 0.89525 0.91428 0.87385 0.82264 0.93444 0.87516 0.91976 0.91514 0.77209 0.91985 0.90519 0.89340 0.75819 0.87256 0.88935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.87 10.29 127.77 1.31 2.19 16 2 N -0.60 -9.04 3.22 -850.43 -2.74 -11.78 16 3 C 0.12 1.11 6.62 86.47 0.57 1.68 16 4 C 0.04 0.51 5.24 86.24 0.45 0.96 16 5 N -0.49 -9.73 4.78 -705.94 -3.37 -13.10 16 6 C 0.37 9.05 5.72 132.97 0.76 9.81 16 7 C -0.26 -6.92 8.08 22.71 0.18 -6.73 16 8 C 0.36 11.93 6.16 132.95 0.82 12.75 16 9 N -0.47 -17.28 5.20 -691.40 -3.60 -20.88 16 10 C 0.06 2.21 6.12 86.77 0.53 2.74 16 11 C -0.13 -5.40 5.67 31.98 0.18 -5.22 16 12 C 0.23 10.94 0.85 -10.36 -0.01 10.93 16 13 O -0.60 -30.60 13.08 -148.98 -1.95 -32.55 16 14 C -0.56 -29.23 8.22 25.60 0.21 -29.02 16 15 H 0.05 2.89 7.53 -2.91 -0.02 2.87 16 16 C 0.03 1.66 5.28 84.65 0.45 2.11 16 17 N -0.91 -46.99 10.69 21.45 0.23 -46.76 16 18 Si 0.96 41.22 29.54 68.60 2.03 43.25 16 19 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 20 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 21 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 22 C 0.05 2.23 6.12 86.65 0.53 2.76 16 23 N -0.57 -19.80 8.10 -197.84 -1.60 -21.40 16 24 C 0.33 9.27 12.28 180.92 2.22 11.49 16 25 N -0.54 -14.68 10.47 -197.83 -2.07 -16.75 16 26 C 0.05 1.02 5.40 85.42 0.46 1.48 16 27 C 0.52 11.37 7.56 87.71 0.66 12.04 16 28 O -0.59 -17.31 16.32 -3.02 -0.05 -17.36 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 0.95 7.26 -2.39 -0.02 0.94 16 31 H 0.11 0.47 7.92 -2.39 -0.02 0.45 16 32 H 0.12 0.33 7.98 -2.39 -0.02 0.31 16 33 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 34 H 0.07 0.80 7.95 -2.38 -0.02 0.78 16 35 H 0.11 1.37 8.03 -2.39 -0.02 1.35 16 36 H 0.16 3.46 7.16 -2.91 -0.02 3.44 16 37 H 0.05 1.65 7.78 -2.39 -0.02 1.63 16 38 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 39 H 0.06 2.71 8.05 -2.39 -0.02 2.69 16 40 H 0.07 3.02 7.76 -2.39 -0.02 3.00 16 41 H 0.38 19.86 6.98 -74.06 -0.52 19.34 16 42 H 0.27 13.32 8.31 -92.71 -0.77 12.55 16 43 H 0.08 3.38 7.63 -2.39 -0.02 3.36 16 44 H 0.09 4.04 5.87 -2.38 -0.01 4.02 16 45 H 0.23 4.70 8.06 -2.91 -0.02 4.68 16 46 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 47 H 0.09 1.69 6.75 -2.39 -0.02 1.67 16 Total: -1.00 -67.26 375.92 -3.30 -70.56 By element: Atomic # 1 Polarization: 36.31 SS G_CDS: 0.49 Total: 36.80 kcal Atomic # 6 Polarization: 20.63 SS G_CDS: 9.34 Total: 29.97 kcal Atomic # 7 Polarization: -117.52 SS G_CDS: -13.15 Total: -130.67 kcal Atomic # 8 Polarization: -47.91 SS G_CDS: -2.00 Total: -49.90 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Total: -67.26 -3.30 -70.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591975713.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.899 kcal (2) G-P(sol) polarization free energy of solvation -67.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds