Wall clock time and date at job start Wed Apr 1 2020 05:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46010 * 118.53853 * 2 1 4 4 C 1.52966 * 110.04648 * 161.81494 * 3 2 1 5 5 N 1.47184 * 108.74410 * 50.27997 * 4 3 2 6 6 C 1.38626 * 111.00281 * 167.64594 * 5 4 3 7 7 C 1.39176 * 120.48538 * 178.93971 * 6 5 4 8 8 C 1.39130 * 118.26673 * 180.23548 * 7 6 5 9 9 N 1.38631 * 120.48016 * 179.74972 * 8 7 6 10 10 C 1.47894 * 111.00250 * 59.87318 * 9 8 7 11 11 C 1.54001 * 107.05723 * 214.15406 * 10 9 8 12 12 C 1.54591 * 105.13911 * 1.22288 * 11 10 9 13 13 O 1.42898 * 110.72205 * 263.42228 * 12 11 10 14 14 C 1.50698 * 110.72576 * 140.31818 * 12 11 10 15 15 H 1.07999 * 119.99599 * 241.45358 * 14 12 11 16 16 C 1.37871 * 120.00171 * 61.45154 * 14 12 11 17 17 N 1.31517 * 120.00146 * 0.02562 * 16 14 12 18 18 Si 1.86804 * 120.00332 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46573 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47174 * 119.99879 * 18 16 14 21 21 H 1.48493 * 109.47097 * 240.00208 * 18 16 14 22 22 C 1.48525 * 111.00202 * 302.46898 * 9 8 7 23 23 N 1.33198 * 119.03230 * 359.48715 * 8 7 6 24 24 C 1.31727 * 120.87613 * 0.52721 * 23 8 7 25 25 N 1.31752 * 121.91706 * 359.72791 * 24 23 8 26 26 C 1.46899 * 110.17550 * 291.01926 * 5 4 3 27 27 C 1.33718 * 118.53943 * 179.97438 * 2 1 3 28 28 O 1.21281 * 118.61981 * 1.70893 * 27 2 1 29 29 H 1.08996 * 109.47199 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46963 * 300.01924 * 1 2 3 31 31 H 1.09001 * 109.46911 * 60.01991 * 1 2 3 32 32 H 1.08999 * 109.37997 * 281.99608 * 3 2 1 33 33 H 1.09003 * 109.37134 * 41.76125 * 3 2 1 34 34 H 1.09007 * 109.57785 * 290.51080 * 4 3 2 35 35 H 1.09000 * 109.60233 * 170.07037 * 4 3 2 36 36 H 1.08002 * 120.86293 * 359.95363 * 7 6 5 37 37 H 1.09003 * 109.91951 * 333.50425 * 10 9 8 38 38 H 1.08999 * 109.92301 * 94.79896 * 10 9 8 39 39 H 1.09001 * 110.30648 * 120.14170 * 11 10 9 40 40 H 1.08999 * 110.30548 * 242.20716 * 11 10 9 41 41 H 0.96694 * 114.00451 * 298.54208 * 13 12 11 42 42 H 0.96992 * 120.00504 * 180.02562 * 17 16 14 43 43 H 1.08996 * 110.67415 * 278.16161 * 22 9 8 44 44 H 1.09000 * 110.66588 * 41.29272 * 22 9 8 45 45 H 1.08001 * 119.04554 * 179.74790 * 24 23 8 46 46 H 1.09000 * 109.38556 * 170.45336 * 26 5 4 47 47 H 1.08997 * 109.38636 * 290.13798 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1626 1.2827 0.0000 4 6 3.6124 1.0911 0.4485 5 7 4.2097 -0.0016 -0.3361 6 6 5.5857 -0.0367 -0.1718 7 6 6.3484 -1.0103 -0.8101 8 6 7.7251 -1.0056 -0.6089 9 7 8.5281 -1.9574 -1.2181 10 6 8.4112 -1.8855 -2.6907 11 6 8.5441 -3.3237 -3.2251 12 6 8.7103 -4.2078 -1.9679 13 8 10.0915 -4.4736 -1.7156 14 6 7.9400 -5.4946 -2.1153 15 1 7.1426 -5.7287 -1.4255 16 6 8.2531 -6.3731 -3.1308 17 7 9.2244 -6.0883 -3.9705 18 14 7.2978 -7.9679 -3.3139 19 1 6.2645 -8.0507 -2.2506 20 1 6.6420 -8.0019 -4.6458 21 1 8.2278 -9.1189 -3.1905 22 6 8.1027 -3.3306 -0.8446 23 7 8.2609 -0.0700 0.1734 24 6 7.5046 0.8349 0.7601 25 7 6.1972 0.8608 0.5989 26 6 3.6018 -1.2854 0.0386 27 6 2.1039 -1.1747 0.0005 28 8 1.4466 -2.1935 -0.0308 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5142 0.8899 31 1 -0.3633 0.5135 -0.8902 32 1 2.1476 1.7025 -1.0058 33 1 1.6614 1.9668 0.6849 34 1 3.6363 0.8358 1.5079 35 1 4.1721 2.0110 0.2793 36 1 5.8832 -1.7528 -1.4414 37 1 7.4397 -1.4752 -2.9665 38 1 9.2088 -1.2633 -3.0966 39 1 7.6453 -3.6086 -3.7720 40 1 9.4203 -3.4088 -3.8679 41 1 10.5358 -4.9547 -2.4270 42 1 9.4444 -6.7061 -4.6851 43 1 8.5127 -3.6098 0.1259 44 1 7.0155 -3.4089 -0.8410 45 1 7.9697 1.5775 1.3916 46 1 3.9256 -2.0567 -0.6602 47 1 3.9190 -1.5556 1.0457 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591975714.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:25 Heat of formation + Delta-G solvation = -4.936241 kcal Electronic energy + Delta-G solvation = -31308.355421 eV Core-core repulsion = 27105.754246 eV Total energy + Delta-G solvation = -4202.601175 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.67900 -41.56276 -40.19278 -38.70680 -36.94093 -36.61398 -34.18085 -33.89703 -32.76295 -31.31885 -30.34671 -29.98614 -29.27733 -26.87480 -26.53385 -25.33168 -24.58735 -23.44016 -21.95286 -21.52498 -19.90259 -19.41707 -19.10213 -18.63581 -17.79940 -17.54556 -17.34538 -17.02307 -16.77782 -16.46376 -16.16565 -16.11430 -15.82187 -15.56198 -15.40967 -15.21714 -14.64690 -14.53285 -14.35752 -13.93453 -13.85207 -13.61031 -13.45287 -13.26174 -13.09228 -12.97014 -12.93183 -12.60535 -12.57429 -12.43891 -12.24410 -12.10431 -11.94249 -11.79829 -11.24389 -11.15976 -10.79087 -10.64360 -10.56606 -10.13515 -9.87463 -9.78286 -9.54767 -8.23066 -6.38582 -0.22389 -0.11632 1.28501 1.39572 1.44151 1.53614 1.80872 2.00239 2.31815 2.43588 2.62388 3.02612 3.07056 3.28806 3.52866 3.57908 3.69418 3.79885 3.85954 3.99661 4.04284 4.09509 4.15579 4.22614 4.27770 4.33236 4.41238 4.47721 4.56384 4.60943 4.65936 4.70109 4.85190 4.93909 4.95198 5.01663 5.08030 5.12801 5.31117 5.36866 5.51398 5.57769 5.59503 5.78078 5.84789 6.12569 6.16657 6.26250 6.66834 6.86895 7.11299 7.33377 7.46281 8.82888 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010909 B = 0.003334 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.987125 B = 8396.379702 C =10498.120449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.603 5.603 3 C 0.116 3.884 4 C 0.043 3.957 5 N -0.469 5.469 6 C 0.363 3.637 7 C -0.273 4.273 8 C 0.364 3.636 9 N -0.492 5.492 10 C 0.056 3.944 11 C -0.117 4.117 12 C 0.245 3.755 13 O -0.589 6.589 14 C -0.561 4.561 15 H 0.056 0.944 16 C 0.035 3.965 17 N -0.907 5.907 18 Si 0.956 3.044 19 H -0.273 1.273 20 H -0.278 1.278 21 H -0.280 1.280 22 C 0.074 3.926 23 N -0.547 5.547 24 C 0.333 3.667 25 N -0.555 5.555 26 C 0.049 3.951 27 C 0.522 3.478 28 O -0.584 6.584 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.124 0.876 34 H 0.065 0.935 35 H 0.124 0.876 36 H 0.144 0.856 37 H 0.056 0.944 38 H 0.079 0.921 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.375 0.625 42 H 0.270 0.730 43 H 0.066 0.934 44 H 0.063 0.937 45 H 0.239 0.761 46 H 0.115 0.885 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.403 19.268 7.567 25.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.335 5.335 3 C -0.006 4.006 4 C -0.083 4.083 5 N -0.188 5.188 6 C 0.123 3.877 7 C -0.301 4.301 8 C 0.128 3.872 9 N -0.215 5.215 10 C -0.070 4.070 11 C -0.156 4.156 12 C 0.205 3.795 13 O -0.397 6.397 14 C -0.599 4.599 15 H 0.075 0.925 16 C -0.166 4.166 17 N -0.546 5.546 18 Si 0.782 3.218 19 H -0.197 1.197 20 H -0.203 1.203 21 H -0.206 1.206 22 C -0.052 4.052 23 N -0.264 5.264 24 C 0.043 3.957 25 N -0.276 5.276 26 C -0.080 4.080 27 C 0.309 3.691 28 O -0.465 6.465 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.142 0.858 34 H 0.083 0.917 35 H 0.142 0.858 36 H 0.161 0.839 37 H 0.074 0.926 38 H 0.098 0.902 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.224 0.776 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.081 0.919 45 H 0.255 0.745 46 H 0.133 0.867 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.000 19.884 8.175 25.656 hybrid contribution -0.884 -2.397 -1.084 2.776 sum -14.884 17.487 7.090 24.034 Atomic orbital electron populations 1.21925 0.77746 1.03893 1.03685 1.47502 1.08624 1.06144 1.71261 1.21875 0.90359 0.83906 1.04414 1.22650 0.94580 0.95084 0.95951 1.59375 0.99789 1.06082 1.53586 1.19837 0.90412 0.89131 0.88293 1.22882 0.95810 1.04244 1.07167 1.20170 0.87618 0.89937 0.89478 1.61548 1.50235 1.02323 1.07363 1.22958 1.00811 0.98862 0.84401 1.22749 1.01245 0.92331 0.99296 1.19509 0.79885 0.91171 0.88956 1.86143 1.25367 1.79305 1.48921 1.21806 1.18660 1.05329 1.14128 0.92544 1.25609 0.95636 1.00779 0.94572 1.69802 1.29951 1.37719 1.17144 0.85542 0.78672 0.79645 0.77960 1.19706 1.20313 1.20567 1.23168 0.97802 0.84653 0.99563 1.68172 1.42295 1.05077 1.10884 1.25529 0.84701 0.93185 0.92248 1.68411 1.13482 1.27155 1.18503 1.22372 0.90649 0.91263 1.03742 1.19888 0.89663 0.83723 0.75804 1.90744 1.66946 1.36146 1.52637 0.91507 0.89322 0.90064 0.89500 0.85800 0.91672 0.85791 0.83854 0.92575 0.90248 0.92518 0.92460 0.77642 0.92080 0.91532 0.91858 0.74549 0.86656 0.89093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.85 10.55 127.77 1.35 2.20 16 2 N -0.60 -9.68 3.23 -850.24 -2.74 -12.43 16 3 C 0.12 1.07 6.64 86.46 0.57 1.65 16 4 C 0.04 0.57 4.92 86.24 0.42 1.00 16 5 N -0.47 -9.44 4.76 -706.00 -3.36 -12.80 16 6 C 0.36 8.85 6.37 132.97 0.85 9.70 16 7 C -0.27 -8.05 7.19 22.71 0.16 -7.89 16 8 C 0.36 12.46 5.88 132.95 0.78 13.24 16 9 N -0.49 -19.58 5.35 -689.05 -3.69 -23.26 16 10 C 0.06 2.13 6.52 86.45 0.56 2.69 16 11 C -0.12 -5.27 5.26 31.47 0.17 -5.11 16 12 C 0.24 12.03 0.95 -10.34 -0.01 12.02 16 13 O -0.59 -31.25 13.10 -148.98 -1.95 -33.20 16 14 C -0.56 -29.51 8.14 25.60 0.21 -29.30 16 15 H 0.06 2.96 7.78 -2.91 -0.02 2.94 16 16 C 0.04 1.83 5.28 84.65 0.45 2.28 16 17 N -0.91 -47.56 11.00 21.45 0.24 -47.33 16 18 Si 0.96 41.79 29.54 68.60 2.03 43.82 16 19 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 20 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 21 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 22 C 0.07 3.21 5.55 86.65 0.48 3.69 16 23 N -0.55 -17.28 10.47 -197.84 -2.07 -19.35 16 24 C 0.33 7.66 12.28 180.92 2.22 9.88 16 25 N -0.55 -12.31 8.70 -197.83 -1.72 -14.04 16 26 C 0.05 1.07 5.18 85.42 0.44 1.52 16 27 C 0.52 12.31 7.57 87.68 0.66 12.97 16 28 O -0.58 -18.61 16.07 -3.03 -0.05 -18.66 16 29 H 0.07 1.21 6.67 -2.39 -0.02 1.19 16 30 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.12 0.34 8.13 -2.39 -0.02 0.32 16 34 H 0.06 0.86 8.08 -2.38 -0.02 0.84 16 35 H 0.12 1.48 7.43 -2.39 -0.02 1.46 16 36 H 0.14 4.33 6.43 -2.91 -0.02 4.31 16 37 H 0.06 1.93 6.71 -2.39 -0.02 1.91 16 38 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 39 H 0.06 2.62 7.84 -2.39 -0.02 2.60 16 40 H 0.06 2.72 7.99 -2.39 -0.02 2.70 16 41 H 0.37 20.02 7.46 -74.06 -0.55 19.47 16 42 H 0.27 13.47 8.31 -92.71 -0.77 12.70 16 43 H 0.07 3.00 8.14 -2.39 -0.02 2.99 16 44 H 0.06 2.57 6.58 -2.39 -0.02 2.56 16 45 H 0.24 3.28 8.06 -2.91 -0.02 3.26 16 46 H 0.12 2.82 7.20 -2.39 -0.02 2.80 16 47 H 0.09 1.93 8.10 -2.39 -0.02 1.91 16 Total: -1.00 -67.99 375.27 -3.54 -71.54 By element: Atomic # 1 Polarization: 34.71 SS G_CDS: 0.46 Total: 35.17 kcal Atomic # 6 Polarization: 21.22 SS G_CDS: 9.32 Total: 30.54 kcal Atomic # 7 Polarization: -115.85 SS G_CDS: -13.35 Total: -129.20 kcal Atomic # 8 Polarization: -49.86 SS G_CDS: -2.00 Total: -51.86 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -67.99 -3.54 -71.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591975714.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.599 kcal (2) G-P(sol) polarization free energy of solvation -67.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds