Wall clock time and date at job start Wed Apr 1 2020 06:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00055 * 2 1 4 4 H 1.48495 * 109.47216 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47117 * 300.00249 * 3 2 1 6 6 H 1.48500 * 109.47277 * 59.99327 * 3 2 1 7 7 C 1.37878 * 119.99699 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99512 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00419 * 0.02562 * 7 2 1 10 10 O 1.42898 * 110.64268 * 298.31659 * 9 7 2 11 11 C 1.55162 * 110.71807 * 61.45208 * 9 7 2 12 12 C 1.54916 * 101.57871 * 153.86603 * 11 9 7 13 13 N 1.47418 * 104.83338 * 322.98876 * 12 11 9 14 14 C 1.34778 * 125.65163 * 204.09081 * 13 12 11 15 15 O 1.21280 * 119.99969 * 180.02562 * 14 13 12 16 16 C 1.50698 * 119.99759 * 0.02983 * 14 13 12 17 17 C 1.52998 * 109.47063 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47157 * 179.97438 * 17 16 14 19 19 C 1.53002 * 109.47497 * 179.97438 * 18 17 16 20 20 C 1.52998 * 109.47501 * 180.02562 * 19 18 17 21 21 C 1.50698 * 109.47322 * 179.97438 * 20 19 18 22 22 C 1.38269 * 119.94432 * 89.99694 * 21 20 19 23 23 C 1.38137 * 120.06013 * 180.02562 * 22 21 20 24 24 C 1.38737 * 119.94162 * 359.97438 * 23 22 21 25 25 O 1.35896 * 120.05545 * 180.02562 * 24 23 22 26 26 C 1.38734 * 119.88732 * 0.27760 * 24 23 22 27 27 C 1.38140 * 119.94299 * 359.46795 * 26 24 23 28 28 C 1.47023 * 108.70131 * 24.36014 * 13 12 11 29 29 H 0.97003 * 120.00124 * 0.02562 * 1 2 3 30 30 H 0.96702 * 114.00658 * 61.68632 * 10 9 7 31 31 H 1.09000 * 111.00271 * 35.79620 * 11 9 7 32 32 H 1.09002 * 111.04013 * 271.95127 * 11 9 7 33 33 H 1.09000 * 110.36158 * 204.15085 * 12 11 9 34 34 H 1.09001 * 110.36765 * 81.83325 * 12 11 9 35 35 H 1.08997 * 109.47005 * 59.99782 * 16 14 13 36 36 H 1.09008 * 109.47207 * 299.99731 * 16 14 13 37 37 H 1.08997 * 109.47384 * 60.00019 * 17 16 14 38 38 H 1.08997 * 109.47329 * 299.99762 * 17 16 14 39 39 H 1.09000 * 109.47274 * 59.99916 * 18 17 16 40 40 H 1.08999 * 109.47493 * 300.00151 * 18 17 16 41 41 H 1.09000 * 109.46925 * 59.99705 * 19 18 17 42 42 H 1.09008 * 109.46725 * 300.00258 * 19 18 17 43 43 H 1.08997 * 109.47096 * 59.99673 * 20 19 18 44 44 H 1.09005 * 109.46515 * 299.99725 * 20 19 18 45 45 H 1.08010 * 119.96894 * 359.97438 * 22 21 20 46 46 H 1.07997 * 120.03660 * 179.97438 * 23 22 21 47 47 H 0.96700 * 114.00170 * 90.00174 * 25 24 23 48 48 H 1.07999 * 120.02623 * 179.72382 * 26 24 23 49 49 H 1.08003 * 119.97390 * 180.23377 * 27 26 24 50 50 H 1.09002 * 109.88717 * 118.13070 * 28 13 12 51 51 H 1.09003 * 109.88078 * 239.29073 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 0.4493 -2.6180 1.1775 11 6 0.3764 -2.6281 -1.2746 12 6 0.2720 -4.1663 -1.4258 13 7 1.5930 -4.6764 -1.0160 14 6 2.1332 -5.8517 -1.3945 15 8 3.2324 -6.1710 -0.9935 16 6 1.3714 -6.7691 -2.3159 17 6 2.2024 -8.0248 -2.5868 18 6 1.4288 -8.9565 -3.5218 19 6 2.2600 -10.2121 -3.7932 20 6 1.4866 -11.1435 -4.7287 21 6 2.3057 -12.3798 -4.9965 22 6 2.1808 -13.4824 -4.1717 23 6 2.9308 -14.6168 -4.4146 24 6 3.8095 -14.6492 -5.4878 25 8 4.5481 -15.7641 -5.7292 26 6 3.9368 -13.5396 -6.3108 27 6 3.1807 -12.4096 -6.0666 28 6 2.2209 -3.6935 -0.1209 29 1 -0.4850 0.8401 -0.0004 30 1 -0.2288 -1.9339 1.2623 31 1 0.8743 -2.1837 -2.1364 32 1 -0.6067 -2.1829 -1.1215 33 1 0.0676 -4.4324 -2.4629 34 1 -0.5063 -4.5598 -0.7719 35 1 1.1723 -6.2557 -3.2566 36 1 0.4276 -7.0512 -1.8491 37 1 2.4020 -8.5384 -1.6463 38 1 3.1459 -7.7424 -3.0538 39 1 1.2289 -8.4433 -4.4624 40 1 0.4854 -9.2390 -3.0544 41 1 2.4603 -10.7255 -2.8528 42 1 3.2032 -9.9292 -4.2608 43 1 1.2867 -10.6298 -5.6690 44 1 0.5433 -11.4263 -4.2614 45 1 1.4969 -13.4565 -3.3361 46 1 2.8333 -15.4776 -3.7699 47 1 4.1185 -16.4009 -6.3165 48 1 4.6235 -13.5608 -7.1441 49 1 3.2766 -11.5469 -6.7093 50 1 2.3882 -4.1388 0.8598 51 1 3.1677 -3.3582 -0.5444 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592950327.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:35:43 Heat of formation + Delta-G solvation = -132.875597 kcal Electronic energy + Delta-G solvation = -28899.214129 eV Core-core repulsion = 24762.312679 eV Total energy + Delta-G solvation = -4136.901449 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.16724 -39.52580 -37.69594 -37.35196 -35.79219 -34.30952 -32.95487 -32.23621 -31.37968 -30.24757 -29.40318 -28.33653 -26.61919 -25.00256 -23.24828 -23.20102 -22.17635 -21.23629 -21.10192 -19.69062 -18.81455 -18.59687 -17.25596 -16.54709 -16.43476 -16.18851 -15.90302 -15.60601 -15.24471 -14.96161 -14.87414 -14.33117 -14.18629 -14.04870 -13.80005 -13.73200 -13.29269 -13.02773 -12.74343 -12.55740 -12.40137 -12.18777 -12.05280 -11.89662 -11.73764 -11.49894 -11.40149 -11.36549 -11.09613 -11.01662 -10.95568 -10.89971 -10.82695 -10.64257 -10.57589 -10.47040 -10.12970 -9.46180 -9.37887 -9.27868 -8.81634 -8.69459 -8.24189 -8.00006 -6.30911 -4.38153 0.83090 0.96414 3.10053 3.17467 3.21564 3.26679 3.31604 3.56288 3.81370 4.25499 4.38065 4.43074 4.59189 4.74227 4.75415 4.90912 4.96786 4.99766 5.01123 5.07758 5.21085 5.29763 5.41211 5.46394 5.51609 5.55922 5.61840 5.63627 5.71884 5.74865 5.77791 5.83386 5.91781 5.94660 6.00482 6.03540 6.05259 6.20230 6.24018 6.29229 6.36317 6.43733 6.44938 6.69638 6.89675 6.96709 7.23393 7.27698 7.33264 7.71310 8.00813 8.14145 8.63591 8.67558 9.28351 9.37381 10.76730 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.032318 B = 0.001358 C = 0.001348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.191597 B =20617.297556 C =20773.558957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.902 3.098 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.534 4.534 8 H 0.064 0.936 9 C 0.246 3.754 10 O -0.586 6.586 11 C -0.135 4.135 12 C 0.095 3.905 13 N -0.610 5.610 14 C 0.519 3.481 15 O -0.557 6.557 16 C -0.135 4.135 17 C -0.103 4.103 18 C -0.119 4.119 19 C -0.114 4.114 20 C -0.082 4.082 21 C -0.086 4.086 22 C -0.101 4.101 23 C -0.143 4.143 24 C 0.094 3.906 25 O -0.501 6.501 26 C -0.143 4.143 27 C -0.101 4.101 28 C 0.122 3.878 29 H 0.267 0.733 30 H 0.382 0.618 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.127 0.873 46 H 0.127 0.873 47 H 0.388 0.612 48 H 0.127 0.873 49 H 0.127 0.873 50 H 0.059 0.941 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.727 -24.601 -13.650 28.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.130 4.130 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.572 4.572 8 H 0.083 0.917 9 C 0.206 3.794 10 O -0.394 6.394 11 C -0.173 4.173 12 C -0.028 4.028 13 N -0.343 5.343 14 C 0.307 3.693 15 O -0.437 6.437 16 C -0.175 4.175 17 C -0.141 4.141 18 C -0.157 4.157 19 C -0.151 4.151 20 C -0.119 4.119 21 C -0.086 4.086 22 C -0.120 4.120 23 C -0.161 4.161 24 C 0.050 3.950 25 O -0.311 6.311 26 C -0.161 4.161 27 C -0.120 4.120 28 C 0.001 3.999 29 H 0.077 0.923 30 H 0.232 0.768 31 H 0.085 0.915 32 H 0.106 0.894 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.145 0.855 46 H 0.145 0.855 47 H 0.244 0.756 48 H 0.145 0.855 49 H 0.145 0.855 50 H 0.078 0.922 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.467 -24.960 -12.986 28.140 hybrid contribution -0.336 1.213 -0.459 1.340 sum -0.803 -23.747 -13.445 27.301 Atomic orbital electron populations 1.69702 1.05947 1.27524 1.50406 1.24980 0.95028 0.99515 0.93476 0.86367 0.80227 0.82728 0.77708 1.19577 1.20829 1.20748 1.21563 0.93744 0.90219 1.51696 0.91730 1.19485 0.86984 0.90735 0.82239 1.86135 1.51791 1.56470 1.45040 1.23298 1.02850 0.90233 1.00944 1.22505 0.84384 0.97573 0.98312 1.48703 1.19450 1.18412 1.47752 1.20303 0.86321 0.80885 0.81767 1.90655 1.21058 1.74324 1.57647 1.21637 0.99933 0.96161 0.99726 1.21329 0.98561 0.94087 1.00138 1.21627 0.98823 0.95484 0.99745 1.21580 0.98907 0.95260 0.99383 1.20658 0.97748 0.92869 1.00621 1.20011 0.97672 0.95731 0.95178 1.20978 0.99322 0.92430 0.99224 1.21430 0.96524 0.99566 0.98628 1.18496 0.93191 0.87826 0.95459 1.84841 1.45125 1.30262 1.70847 1.21428 1.00559 0.93927 1.00215 1.20978 0.95689 0.97762 0.97523 1.22048 0.96721 0.88563 0.92618 0.92279 0.76801 0.91480 0.89371 0.92140 0.91989 0.89305 0.89334 0.91298 0.91271 0.91861 0.91860 0.91683 0.91683 0.90834 0.90835 0.85524 0.85496 0.75606 0.85493 0.85520 0.92221 0.91097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.72 10.67 55.43 0.59 -22.13 16 2 C 0.07 1.85 5.28 -17.82 -0.09 1.75 16 3 Si 0.90 20.16 29.54 -169.99 -5.02 15.13 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.53 -13.93 8.22 -34.44 -0.28 -14.22 16 8 H 0.06 1.71 7.58 -52.48 -0.40 1.31 16 9 C 0.25 5.89 0.85 -89.93 -0.08 5.82 16 10 O -0.59 -14.58 13.07 -35.23 -0.46 -15.04 16 11 C -0.13 -2.85 5.47 -24.58 -0.13 -2.98 16 12 C 0.09 1.67 6.68 -2.53 -0.02 1.66 16 13 N -0.61 -12.01 3.33 -170.52 -0.57 -12.57 16 14 C 0.52 9.56 7.85 -10.99 -0.09 9.48 16 15 O -0.56 -12.15 16.31 5.56 0.09 -12.06 16 16 C -0.13 -1.73 4.71 -27.89 -0.13 -1.87 16 17 C -0.10 -1.21 4.50 -26.73 -0.12 -1.33 16 18 C -0.12 -1.01 5.21 -26.73 -0.14 -1.15 16 19 C -0.11 -0.91 5.20 -26.73 -0.14 -1.05 16 20 C -0.08 -0.55 5.34 -27.89 -0.15 -0.70 16 21 C -0.09 -0.66 5.13 -104.60 -0.54 -1.20 16 22 C -0.10 -0.77 9.69 -39.61 -0.38 -1.16 16 23 C -0.14 -1.12 9.99 -39.43 -0.39 -1.51 16 24 C 0.09 0.78 6.71 -39.21 -0.26 0.51 16 25 O -0.50 -3.67 13.50 -19.41 -0.26 -3.93 16 26 C -0.14 -1.12 9.99 -39.43 -0.39 -1.51 16 27 C -0.10 -0.77 9.69 -39.61 -0.38 -1.16 16 28 C 0.12 2.78 6.23 -3.06 -0.02 2.76 16 29 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 30 H 0.38 9.45 7.46 45.56 0.34 9.79 16 31 H 0.07 1.46 8.04 -51.93 -0.42 1.04 16 32 H 0.09 1.93 7.54 -51.93 -0.39 1.54 16 33 H 0.06 0.87 7.48 -51.93 -0.39 0.49 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.09 1.00 7.85 -51.93 -0.41 0.60 16 36 H 0.09 1.01 8.14 -51.92 -0.42 0.58 16 37 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 38 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 43 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 44 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 45 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 46 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 47 H 0.39 0.91 9.06 45.56 0.41 1.32 16 48 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 49 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 50 H 0.06 1.41 8.07 -51.93 -0.42 1.00 16 51 H 0.07 1.65 7.66 -51.93 -0.40 1.25 16 LS Contribution 416.97 15.07 6.28 6.28 Total: -1.00 -30.83 416.97 -10.20 -41.03 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -7.11 Total: 11.14 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -3.74 Total: -7.85 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: 0.02 Total: -34.70 kcal Atomic # 8 Polarization: -30.40 SS G_CDS: -0.63 Total: -31.03 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -30.83 -10.20 -41.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592950327.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.849 kcal (2) G-P(sol) polarization free energy of solvation -30.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds