Wall clock time and date at job start Wed Apr 1 2020 06:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00055 * 2 1 4 4 H 1.48495 * 109.47216 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47117 * 300.00249 * 3 2 1 6 6 H 1.48500 * 109.47277 * 59.99327 * 3 2 1 7 7 C 1.37878 * 119.99699 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99512 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00419 * 0.02562 * 7 2 1 10 10 O 1.42898 * 110.64268 * 298.31659 * 9 7 2 11 11 C 1.55162 * 110.71807 * 61.45208 * 9 7 2 12 12 C 1.54916 * 101.57871 * 153.86603 * 11 9 7 13 13 N 1.47418 * 104.83338 * 322.98876 * 12 11 9 14 14 C 1.34778 * 125.65163 * 204.09081 * 13 12 11 15 15 O 1.21280 * 119.99969 * 180.02562 * 14 13 12 16 16 C 1.50698 * 119.99759 * 0.02983 * 14 13 12 17 17 C 1.52998 * 109.47063 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47157 * 179.97438 * 17 16 14 19 19 C 1.53002 * 109.47497 * 179.97438 * 18 17 16 20 20 C 1.52998 * 109.47501 * 180.02562 * 19 18 17 21 21 C 1.50698 * 109.47322 * 179.97438 * 20 19 18 22 22 C 1.38269 * 119.94432 * 89.99694 * 21 20 19 23 23 C 1.38137 * 120.06013 * 180.02562 * 22 21 20 24 24 C 1.38737 * 119.94162 * 359.97438 * 23 22 21 25 25 O 1.35896 * 120.05545 * 180.02562 * 24 23 22 26 26 C 1.38734 * 119.88732 * 0.27760 * 24 23 22 27 27 C 1.38140 * 119.94299 * 359.46795 * 26 24 23 28 28 C 1.47023 * 108.70131 * 24.36014 * 13 12 11 29 29 H 0.97003 * 120.00124 * 0.02562 * 1 2 3 30 30 H 0.96702 * 114.00658 * 61.68632 * 10 9 7 31 31 H 1.09000 * 111.00271 * 35.79620 * 11 9 7 32 32 H 1.09002 * 111.04013 * 271.95127 * 11 9 7 33 33 H 1.09000 * 110.36158 * 204.15085 * 12 11 9 34 34 H 1.09001 * 110.36765 * 81.83325 * 12 11 9 35 35 H 1.08997 * 109.47005 * 59.99782 * 16 14 13 36 36 H 1.09008 * 109.47207 * 299.99731 * 16 14 13 37 37 H 1.08997 * 109.47384 * 60.00019 * 17 16 14 38 38 H 1.08997 * 109.47329 * 299.99762 * 17 16 14 39 39 H 1.09000 * 109.47274 * 59.99916 * 18 17 16 40 40 H 1.08999 * 109.47493 * 300.00151 * 18 17 16 41 41 H 1.09000 * 109.46925 * 59.99705 * 19 18 17 42 42 H 1.09008 * 109.46725 * 300.00258 * 19 18 17 43 43 H 1.08997 * 109.47096 * 59.99673 * 20 19 18 44 44 H 1.09005 * 109.46515 * 299.99725 * 20 19 18 45 45 H 1.08010 * 119.96894 * 359.97438 * 22 21 20 46 46 H 1.07997 * 120.03660 * 179.97438 * 23 22 21 47 47 H 0.96700 * 114.00170 * 90.00174 * 25 24 23 48 48 H 1.07999 * 120.02623 * 179.72382 * 26 24 23 49 49 H 1.08003 * 119.97390 * 180.23377 * 27 26 24 50 50 H 1.09002 * 109.88717 * 118.13070 * 28 13 12 51 51 H 1.09003 * 109.88078 * 239.29073 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 0.4493 -2.6180 1.1775 11 6 0.3764 -2.6281 -1.2746 12 6 0.2720 -4.1663 -1.4258 13 7 1.5930 -4.6764 -1.0160 14 6 2.1332 -5.8517 -1.3945 15 8 3.2324 -6.1710 -0.9935 16 6 1.3714 -6.7691 -2.3159 17 6 2.2024 -8.0248 -2.5868 18 6 1.4288 -8.9565 -3.5218 19 6 2.2600 -10.2121 -3.7932 20 6 1.4866 -11.1435 -4.7287 21 6 2.3057 -12.3798 -4.9965 22 6 2.1808 -13.4824 -4.1717 23 6 2.9308 -14.6168 -4.4146 24 6 3.8095 -14.6492 -5.4878 25 8 4.5481 -15.7641 -5.7292 26 6 3.9368 -13.5396 -6.3108 27 6 3.1807 -12.4096 -6.0666 28 6 2.2209 -3.6935 -0.1209 29 1 -0.4850 0.8401 -0.0004 30 1 -0.2288 -1.9339 1.2623 31 1 0.8743 -2.1837 -2.1364 32 1 -0.6067 -2.1829 -1.1215 33 1 0.0676 -4.4324 -2.4629 34 1 -0.5063 -4.5598 -0.7719 35 1 1.1723 -6.2557 -3.2566 36 1 0.4276 -7.0512 -1.8491 37 1 2.4020 -8.5384 -1.6463 38 1 3.1459 -7.7424 -3.0538 39 1 1.2289 -8.4433 -4.4624 40 1 0.4854 -9.2390 -3.0544 41 1 2.4603 -10.7255 -2.8528 42 1 3.2032 -9.9292 -4.2608 43 1 1.2867 -10.6298 -5.6690 44 1 0.5433 -11.4263 -4.2614 45 1 1.4969 -13.4565 -3.3361 46 1 2.8333 -15.4776 -3.7699 47 1 4.1185 -16.4009 -6.3165 48 1 4.6235 -13.5608 -7.1441 49 1 3.2766 -11.5469 -6.7093 50 1 2.3882 -4.1388 0.8598 51 1 3.1677 -3.3582 -0.5444 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592950327.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:35:37 Heat of formation + Delta-G solvation = -152.513436 kcal Electronic energy + Delta-G solvation = -28900.065689 eV Core-core repulsion = 24762.312679 eV Total energy + Delta-G solvation = -4137.753010 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 2.86 seconds Orbital eigenvalues (eV) -41.07033 -40.69245 -39.08681 -38.17558 -36.57557 -36.07694 -34.21781 -33.75294 -31.91514 -31.61647 -30.57053 -29.90682 -27.70969 -26.51870 -24.34244 -23.74100 -23.44610 -22.04207 -21.73462 -21.43185 -20.06486 -19.34272 -19.15528 -17.99177 -17.26723 -16.93840 -16.87236 -16.77089 -16.55800 -16.17719 -16.02504 -15.99913 -15.31678 -14.84889 -14.79915 -14.54403 -14.36287 -14.28562 -13.87818 -13.80589 -13.48322 -13.27177 -13.17345 -13.12912 -13.06815 -13.01931 -12.68066 -12.54583 -12.48005 -12.40729 -12.27160 -11.98906 -11.86522 -11.74170 -11.62784 -11.38492 -11.28897 -11.27294 -10.85422 -10.62044 -10.14400 -9.93171 -9.60914 -9.37172 -8.25777 -6.39940 0.28373 0.41130 1.38992 1.43690 1.53427 1.66333 2.08462 2.39401 2.68860 2.99735 3.33130 3.56531 3.79627 3.87690 3.91398 4.01427 4.05853 4.08777 4.12859 4.22716 4.31050 4.37365 4.44491 4.47616 4.56844 4.59449 4.60664 4.66076 4.77162 4.79754 4.89758 4.93142 4.99128 5.03931 5.04818 5.11109 5.14767 5.18755 5.26719 5.37351 5.40043 5.45859 5.47549 5.48397 5.54162 5.57869 5.73313 5.76019 5.94869 6.08024 6.60542 6.68245 6.85314 7.18399 7.30444 7.40146 8.80388 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.032318 B = 0.001358 C = 0.001348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.191597 B =20617.297556 C =20773.558957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.040 3.960 3 Si 0.957 3.043 4 H -0.278 1.278 5 H -0.273 1.273 6 H -0.278 1.278 7 C -0.565 4.565 8 H 0.048 0.952 9 C 0.233 3.767 10 O -0.593 6.593 11 C -0.126 4.126 12 C 0.104 3.896 13 N -0.615 5.615 14 C 0.511 3.489 15 O -0.599 6.599 16 C -0.123 4.123 17 C -0.100 4.100 18 C -0.109 4.109 19 C -0.111 4.111 20 C -0.075 4.075 21 C -0.096 4.096 22 C -0.109 4.109 23 C -0.156 4.156 24 C 0.084 3.916 25 O -0.514 6.514 26 C -0.155 4.155 27 C -0.109 4.109 28 C 0.128 3.872 29 H 0.272 0.728 30 H 0.380 0.620 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.073 0.927 35 H 0.117 0.883 36 H 0.115 0.885 37 H 0.050 0.950 38 H 0.050 0.950 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.140 0.860 46 H 0.136 0.864 47 H 0.408 0.592 48 H 0.136 0.864 49 H 0.140 0.860 50 H 0.038 0.962 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.496 -25.211 -15.367 29.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.162 4.162 3 Si 0.783 3.217 4 H -0.203 1.203 5 H -0.199 1.199 6 H -0.204 1.204 7 C -0.603 4.603 8 H 0.066 0.934 9 C 0.193 3.807 10 O -0.402 6.402 11 C -0.164 4.164 12 C -0.017 4.017 13 N -0.348 5.348 14 C 0.302 3.698 15 O -0.482 6.482 16 C -0.162 4.162 17 C -0.139 4.139 18 C -0.146 4.146 19 C -0.149 4.149 20 C -0.112 4.112 21 C -0.096 4.096 22 C -0.127 4.127 23 C -0.174 4.174 24 C 0.039 3.961 25 O -0.327 6.327 26 C -0.174 4.174 27 C -0.127 4.127 28 C 0.005 3.995 29 H 0.082 0.918 30 H 0.230 0.770 31 H 0.075 0.925 32 H 0.099 0.901 33 H 0.123 0.877 34 H 0.092 0.908 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.103 0.897 44 H 0.103 0.897 45 H 0.158 0.842 46 H 0.154 0.846 47 H 0.267 0.733 48 H 0.154 0.846 49 H 0.158 0.842 50 H 0.057 0.943 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.268 -25.593 -14.727 29.615 hybrid contribution 0.273 1.376 0.114 1.407 sum -1.994 -24.217 -14.613 28.355 Atomic orbital electron populations 1.69745 1.06424 1.28351 1.49721 1.25542 0.95880 1.01764 0.92971 0.85527 0.78692 0.79514 0.77979 1.20307 1.19866 1.20351 1.21753 0.93307 0.91983 1.53255 0.93416 1.19617 0.87575 0.90314 0.83153 1.86120 1.51818 1.56306 1.45939 1.23076 1.01418 0.93172 0.98773 1.22552 0.83392 0.94559 1.01230 1.48822 1.20102 1.18473 1.47387 1.21456 0.86109 0.80638 0.81587 1.90635 1.23228 1.75072 1.59217 1.21726 0.99991 0.95113 0.99416 1.21306 0.98321 0.94243 0.99985 1.21553 0.98738 0.94726 0.99609 1.21528 0.98753 0.95440 0.99192 1.20614 0.97655 0.92094 1.00823 1.20204 0.97950 0.96221 0.95262 1.21213 0.99475 0.92381 0.99604 1.21626 0.96744 1.00178 0.98844 1.18681 0.93328 0.88273 0.95780 1.84780 1.45750 1.30597 1.71603 1.21623 1.01019 0.94060 1.00689 1.21211 0.95534 0.98123 0.97802 1.21739 0.96276 0.89158 0.92373 0.91835 0.77041 0.92495 0.90088 0.87657 0.90833 0.86534 0.86700 0.93142 0.93071 0.90286 0.90314 0.92701 0.92696 0.89742 0.89740 0.84237 0.84598 0.73334 0.84611 0.84243 0.94306 0.92786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.38 10.67 21.45 0.23 -45.15 16 2 C 0.04 2.04 5.28 84.65 0.45 2.49 16 3 Si 0.96 41.27 29.54 68.60 2.03 43.29 16 4 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 6 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 7 C -0.56 -30.11 8.22 25.60 0.21 -29.90 16 8 H 0.05 2.62 7.58 -2.91 -0.02 2.60 16 9 C 0.23 11.34 0.85 -10.35 -0.01 11.33 16 10 O -0.59 -29.88 13.07 -148.98 -1.95 -31.83 16 11 C -0.13 -5.20 5.47 31.99 0.17 -5.03 16 12 C 0.10 3.39 6.68 86.86 0.58 3.97 16 13 N -0.62 -23.61 3.33 -811.78 -2.70 -26.31 16 14 C 0.51 18.27 7.85 87.66 0.69 18.96 16 15 O -0.60 -26.52 16.31 -3.03 -0.05 -26.57 16 16 C -0.12 -2.77 4.71 29.85 0.14 -2.63 16 17 C -0.10 -2.16 4.50 30.59 0.14 -2.03 16 18 C -0.11 -1.49 5.21 30.59 0.16 -1.33 16 19 C -0.11 -1.57 5.20 30.59 0.16 -1.42 16 20 C -0.07 -0.82 5.34 29.85 0.16 -0.66 16 21 C -0.10 -1.35 5.13 -19.85 -0.10 -1.45 16 22 C -0.11 -1.53 9.69 22.25 0.22 -1.31 16 23 C -0.16 -2.32 9.99 22.37 0.22 -2.10 16 24 C 0.08 1.33 6.71 22.51 0.15 1.48 16 25 O -0.51 -7.22 13.50 -92.38 -1.25 -8.47 16 26 C -0.16 -2.33 9.99 22.37 0.22 -2.11 16 27 C -0.11 -1.53 9.69 22.25 0.22 -1.32 16 28 C 0.13 5.97 6.23 86.73 0.54 6.51 16 29 H 0.27 12.94 8.31 -92.71 -0.77 12.16 16 30 H 0.38 18.98 7.46 -74.06 -0.55 18.43 16 31 H 0.06 2.44 8.04 -2.39 -0.02 2.42 16 32 H 0.08 3.46 7.54 -2.39 -0.02 3.44 16 33 H 0.11 2.53 7.48 -2.39 -0.02 2.51 16 34 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.12 2.06 7.85 -2.39 -0.02 2.04 16 36 H 0.11 2.07 8.14 -2.38 -0.02 2.05 16 37 H 0.05 1.26 8.10 -2.39 -0.02 1.24 16 38 H 0.05 1.28 8.10 -2.39 -0.02 1.26 16 39 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 43 H 0.08 0.76 8.08 -2.39 -0.02 0.74 16 44 H 0.08 0.76 8.09 -2.38 -0.02 0.74 16 45 H 0.14 1.49 8.06 -2.91 -0.02 1.46 16 46 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 47 H 0.41 1.61 9.06 -74.06 -0.67 0.93 16 48 H 0.14 1.66 8.06 -2.91 -0.02 1.63 16 49 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 50 H 0.04 1.92 8.07 -2.39 -0.02 1.90 16 51 H 0.05 2.64 7.66 -2.39 -0.02 2.63 16 Total: -1.00 -68.14 416.97 0.33 -67.80 By element: Atomic # 1 Polarization: 34.06 SS G_CDS: -0.29 Total: 33.77 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: 4.32 Total: -6.54 kcal Atomic # 7 Polarization: -68.99 SS G_CDS: -2.47 Total: -71.46 kcal Atomic # 8 Polarization: -63.63 SS G_CDS: -3.24 Total: -66.87 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.29 kcal Total: -68.14 0.33 -67.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592950327.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.710 kcal (2) G-P(sol) polarization free energy of solvation -68.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.86 seconds