Wall clock time and date at job start Wed Apr 1 2020 06:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86808 * 119.99926 * 2 1 4 4 H 1.48498 * 109.47110 * 270.00352 * 3 2 1 5 5 H 1.48504 * 109.47044 * 30.00076 * 3 2 1 6 6 H 1.48500 * 109.47158 * 150.00096 * 3 2 1 7 7 C 1.37875 * 120.00358 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00333 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99529 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.91711 * 56.10371 * 9 7 2 11 11 C 1.55151 * 111.00641 * 292.19405 * 9 7 2 12 12 C 1.54326 * 102.94313 * 206.42337 * 11 9 7 13 13 N 1.47021 * 107.27002 * 22.19392 * 12 11 9 14 14 C 1.34778 * 125.64744 * 181.08547 * 13 12 11 15 15 O 1.21282 * 119.99926 * 179.97438 * 14 13 12 16 16 C 1.50700 * 119.99819 * 359.96801 * 14 13 12 17 17 C 1.53004 * 109.46723 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.46831 * 180.02562 * 17 16 14 19 19 C 1.53004 * 109.47162 * 180.02562 * 18 17 16 20 20 C 1.53000 * 109.47503 * 179.97438 * 19 18 17 21 21 C 1.50696 * 109.47462 * 180.02562 * 20 19 18 22 22 C 1.38261 * 119.94446 * 269.72912 * 21 20 19 23 23 C 1.38138 * 120.05606 * 179.72518 * 22 21 20 24 24 C 1.38728 * 119.94540 * 0.56666 * 23 22 21 25 25 O 1.35900 * 120.06055 * 179.68311 * 24 23 22 26 26 C 1.38729 * 119.88811 * 359.70440 * 24 23 22 27 27 C 1.38147 * 119.94549 * 0.02562 * 26 24 23 28 28 C 1.47421 * 108.70450 * 1.06211 * 13 12 11 29 29 H 0.96999 * 120.00046 * 359.97438 * 1 2 3 30 30 H 0.96708 * 113.99322 * 303.89498 * 10 9 7 31 31 H 1.09000 * 110.72429 * 324.79291 * 11 9 7 32 32 H 1.09003 * 110.71831 * 88.06413 * 11 9 7 33 33 H 1.08996 * 109.88384 * 262.77575 * 12 11 9 34 34 H 1.09002 * 110.00880 * 141.68666 * 12 11 9 35 35 H 1.08995 * 109.47201 * 299.99171 * 16 14 13 36 36 H 1.08996 * 109.47240 * 59.99690 * 16 14 13 37 37 H 1.08995 * 109.47243 * 299.99927 * 17 16 14 38 38 H 1.09003 * 109.47257 * 60.00284 * 17 16 14 39 39 H 1.09003 * 109.47445 * 300.00016 * 18 17 16 40 40 H 1.08996 * 109.47640 * 60.00140 * 18 17 16 41 41 H 1.08995 * 109.46928 * 299.99927 * 19 18 17 42 42 H 1.09003 * 109.47241 * 60.00081 * 19 18 17 43 43 H 1.09010 * 109.46883 * 300.00453 * 20 19 18 44 44 H 1.09003 * 109.47127 * 59.99597 * 20 19 18 45 45 H 1.08005 * 119.97201 * 359.97438 * 22 21 20 46 46 H 1.08004 * 120.03067 * 180.25006 * 23 22 21 47 47 H 0.96697 * 114.00062 * 270.02853 * 25 24 23 48 48 H 1.08002 * 120.03559 * 179.97438 * 26 24 23 49 49 H 1.07993 * 119.97567 * 179.97438 * 27 26 24 50 50 H 1.09002 * 110.36865 * 217.03325 * 28 13 12 51 51 H 1.08994 * 110.46657 * 94.75473 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 0.3509 -2.5684 -1.1082 11 6 0.4997 -2.7074 1.3408 12 6 0.3981 -4.2438 1.4450 13 7 1.4591 -4.8098 0.5991 14 6 1.6918 -6.1230 0.4044 15 8 2.5989 -6.4774 -0.3184 16 6 0.8249 -7.1508 1.0849 17 6 1.2978 -8.5535 0.6979 18 6 0.4173 -9.5970 1.3882 19 6 0.8905 -10.9998 1.0018 20 6 0.0105 -12.0434 1.6926 21 6 0.4770 -13.4250 1.3125 22 6 -0.0581 -14.0532 0.2032 23 6 0.3719 -15.3174 -0.1507 24 6 1.3330 -15.9614 0.6148 25 8 1.7531 -17.2077 0.2725 26 6 1.8644 -15.3312 1.7307 27 6 1.4350 -14.0647 2.0772 28 6 2.2259 -3.7031 -0.0012 29 1 -0.4850 0.8400 0.0004 30 1 -0.2788 -1.8355 -1.1497 31 1 1.0755 -2.3016 2.1726 32 1 -0.4922 -2.2572 1.3011 33 1 -0.5769 -4.5759 1.0886 34 1 0.5412 -4.5578 2.4790 35 1 0.8963 -7.0283 2.1656 36 1 -0.2106 -7.0175 0.7717 37 1 1.2261 -8.6758 -0.3828 38 1 2.3333 -8.6871 1.0108 39 1 0.4885 -9.4749 2.4691 40 1 -0.6181 -9.4634 1.0750 41 1 0.8196 -11.1222 -0.0790 42 1 1.9259 -11.1332 1.3154 43 1 0.0818 -11.9207 2.7734 44 1 -1.0251 -11.9102 1.3794 45 1 -0.8101 -13.5536 -0.3896 46 1 -0.0435 -15.8061 -1.0197 47 1 1.2386 -17.9206 0.6751 48 1 2.6124 -15.8306 2.3286 49 1 1.8480 -13.5738 2.9459 50 1 2.5186 -3.9536 -1.0209 51 1 3.1062 -3.4787 0.6010 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592950328.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:35:49 Heat of formation + Delta-G solvation = -133.130560 kcal Electronic energy + Delta-G solvation = -28915.150847 eV Core-core repulsion = 24778.238342 eV Total energy + Delta-G solvation = -4136.912505 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -40.16170 -39.49527 -37.68342 -37.31301 -35.77484 -34.29207 -32.93873 -32.16107 -31.37374 -30.28609 -29.45652 -28.30396 -26.61436 -25.00902 -23.24804 -23.19538 -22.13101 -21.20738 -21.07806 -19.69273 -18.80969 -18.59345 -17.26222 -16.57714 -16.42332 -16.19046 -15.86941 -15.59798 -15.11997 -14.99518 -14.90595 -14.32790 -14.10580 -14.02753 -13.78529 -13.72434 -13.32024 -13.03310 -12.71995 -12.54783 -12.37991 -12.20806 -12.05534 -11.87799 -11.73178 -11.61008 -11.36107 -11.33969 -11.08949 -11.00440 -10.94162 -10.88488 -10.82081 -10.63992 -10.55662 -10.49448 -10.06177 -9.46449 -9.37295 -9.29320 -8.81061 -8.69885 -8.23447 -7.96559 -6.32439 -4.40110 0.83704 0.96963 3.12843 3.18337 3.22145 3.25769 3.28865 3.59485 3.82105 4.24218 4.39052 4.43731 4.59671 4.75714 4.76448 4.91949 4.95668 5.00451 5.02246 5.10199 5.22188 5.31106 5.42650 5.47905 5.53176 5.56021 5.62382 5.65501 5.73487 5.76018 5.76769 5.84897 5.88678 5.95492 6.00934 6.04100 6.06571 6.21979 6.29582 6.30290 6.38075 6.43945 6.44347 6.66114 6.87136 6.97419 7.23954 7.27868 7.30565 7.71229 7.97278 8.17735 8.61546 8.69663 9.29061 9.45829 10.75320 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.038714 B = 0.001343 C = 0.001335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.077529 B =20850.364394 C =20972.308286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.065 0.935 9 C 0.248 3.752 10 O -0.584 6.584 11 C -0.140 4.140 12 C 0.101 3.899 13 N -0.609 5.609 14 C 0.520 3.480 15 O -0.558 6.558 16 C -0.135 4.135 17 C -0.103 4.103 18 C -0.119 4.119 19 C -0.114 4.114 20 C -0.082 4.082 21 C -0.086 4.086 22 C -0.101 4.101 23 C -0.143 4.143 24 C 0.094 3.906 25 O -0.501 6.501 26 C -0.143 4.143 27 C -0.102 4.102 28 C 0.119 3.881 29 H 0.269 0.731 30 H 0.385 0.615 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.127 0.873 46 H 0.127 0.873 47 H 0.388 0.612 48 H 0.127 0.873 49 H 0.127 0.873 50 H 0.070 0.930 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.304 -26.509 7.320 27.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.130 4.130 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.574 4.574 8 H 0.084 0.916 9 C 0.207 3.793 10 O -0.395 6.395 11 C -0.178 4.178 12 C -0.022 4.022 13 N -0.341 5.341 14 C 0.309 3.691 15 O -0.437 6.437 16 C -0.175 4.175 17 C -0.141 4.141 18 C -0.157 4.157 19 C -0.151 4.151 20 C -0.119 4.119 21 C -0.086 4.086 22 C -0.119 4.119 23 C -0.161 4.161 24 C 0.050 3.950 25 O -0.311 6.311 26 C -0.162 4.162 27 C -0.120 4.120 28 C -0.003 4.003 29 H 0.079 0.921 30 H 0.237 0.763 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.091 0.909 44 H 0.092 0.908 45 H 0.145 0.855 46 H 0.145 0.855 47 H 0.244 0.756 48 H 0.145 0.855 49 H 0.145 0.855 50 H 0.088 0.912 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.216 -26.887 6.484 27.844 hybrid contribution -0.315 1.199 0.486 1.332 sum -3.531 -25.688 6.970 26.850 Atomic orbital electron populations 1.69559 1.06011 1.27762 1.50494 1.24988 0.95014 0.99567 0.93405 0.86400 0.79795 0.82299 0.78401 1.20359 1.21014 1.19688 1.21496 0.93816 0.90244 1.51832 0.91635 1.19588 0.86057 0.90851 0.82760 1.86104 1.50962 1.52742 1.49651 1.23201 1.03036 0.90151 1.01438 1.22138 0.90147 0.97079 0.92831 1.48651 1.33044 1.05150 1.47267 1.20279 0.84992 0.82057 0.81810 1.90652 1.33285 1.80142 1.39656 1.21634 1.00199 0.94233 1.01395 1.21329 0.99757 0.91731 1.01288 1.21627 0.99707 0.93820 1.00520 1.21579 0.99439 0.93378 1.00730 1.20661 0.99899 0.90309 1.01033 1.20011 0.96758 0.96409 0.95398 1.20982 0.99948 0.94407 0.96605 1.21430 0.97498 0.96481 1.00717 1.18493 0.95502 0.86704 0.94273 1.84841 1.59401 1.13646 1.73189 1.21428 1.01323 0.96526 0.96877 1.20976 0.96825 0.94315 0.99850 1.22360 0.94486 0.85437 0.98026 0.92063 0.76272 0.91373 0.89889 0.92425 0.92912 0.89433 0.89285 0.91257 0.91329 0.91907 0.91835 0.91661 0.91705 0.90856 0.90820 0.85504 0.85489 0.75615 0.85505 0.85536 0.91201 0.91234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.89 10.79 55.43 0.60 -22.29 16 2 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 3 Si 0.90 19.99 29.54 -169.99 -5.02 14.97 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.54 -13.86 8.25 -34.44 -0.28 -14.15 16 8 H 0.07 1.69 7.77 -52.49 -0.41 1.28 16 9 C 0.25 5.98 0.89 -89.62 -0.08 5.90 16 10 O -0.58 -15.00 13.18 -35.23 -0.46 -15.47 16 11 C -0.14 -2.94 5.64 -24.90 -0.14 -3.08 16 12 C 0.10 1.78 6.49 -3.06 -0.02 1.76 16 13 N -0.61 -12.06 3.33 -170.52 -0.57 -12.63 16 14 C 0.52 9.74 7.85 -10.99 -0.09 9.65 16 15 O -0.56 -12.32 16.24 5.56 0.09 -12.23 16 16 C -0.13 -1.78 4.89 -27.88 -0.14 -1.91 16 17 C -0.10 -1.23 4.50 -26.73 -0.12 -1.35 16 18 C -0.12 -1.03 5.21 -26.73 -0.14 -1.17 16 19 C -0.11 -0.93 5.20 -26.73 -0.14 -1.07 16 20 C -0.08 -0.56 5.34 -27.88 -0.15 -0.71 16 21 C -0.09 -0.67 5.13 -104.60 -0.54 -1.21 16 22 C -0.10 -0.78 9.69 -39.61 -0.38 -1.17 16 23 C -0.14 -1.13 9.99 -39.44 -0.39 -1.52 16 24 C 0.09 0.78 6.70 -39.22 -0.26 0.52 16 25 O -0.50 -3.69 13.50 -19.43 -0.26 -3.96 16 26 C -0.14 -1.12 9.99 -39.43 -0.39 -1.52 16 27 C -0.10 -0.78 9.69 -39.60 -0.38 -1.16 16 28 C 0.12 2.68 6.08 -2.53 -0.02 2.66 16 29 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 30 H 0.39 9.94 6.93 45.56 0.32 10.26 16 31 H 0.07 1.43 8.03 -51.93 -0.42 1.01 16 32 H 0.08 1.82 7.85 -51.93 -0.41 1.41 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 38 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.45 8.08 -51.92 -0.42 0.03 16 44 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 45 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 46 H 0.13 0.83 8.06 -52.48 -0.42 0.40 16 47 H 0.39 0.93 9.06 45.56 0.41 1.34 16 48 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 49 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 50 H 0.07 1.69 8.04 -51.93 -0.42 1.28 16 51 H 0.07 1.52 8.01 -51.93 -0.42 1.11 16 LS Contribution 418.46 15.07 6.31 6.31 Total: -1.00 -30.95 418.46 -10.31 -41.25 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -7.23 Total: 11.82 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -3.76 Total: -7.77 kcal Atomic # 7 Polarization: -34.95 SS G_CDS: 0.03 Total: -34.92 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: -0.64 Total: -31.66 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -30.95 -10.31 -41.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592950328.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.879 kcal (2) G-P(sol) polarization free energy of solvation -30.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds