Wall clock time and date at job start Wed Apr 1 2020 06:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86808 * 119.99926 * 2 1 4 4 H 1.48498 * 109.47110 * 270.00352 * 3 2 1 5 5 H 1.48504 * 109.47044 * 30.00076 * 3 2 1 6 6 H 1.48500 * 109.47158 * 150.00096 * 3 2 1 7 7 C 1.37875 * 120.00358 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00333 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99529 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.91711 * 56.10371 * 9 7 2 11 11 C 1.55151 * 111.00641 * 292.19405 * 9 7 2 12 12 C 1.54326 * 102.94313 * 206.42337 * 11 9 7 13 13 N 1.47021 * 107.27002 * 22.19392 * 12 11 9 14 14 C 1.34778 * 125.64744 * 181.08547 * 13 12 11 15 15 O 1.21282 * 119.99926 * 179.97438 * 14 13 12 16 16 C 1.50700 * 119.99819 * 359.96801 * 14 13 12 17 17 C 1.53004 * 109.46723 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.46831 * 180.02562 * 17 16 14 19 19 C 1.53004 * 109.47162 * 180.02562 * 18 17 16 20 20 C 1.53000 * 109.47503 * 179.97438 * 19 18 17 21 21 C 1.50696 * 109.47462 * 180.02562 * 20 19 18 22 22 C 1.38261 * 119.94446 * 269.72912 * 21 20 19 23 23 C 1.38138 * 120.05606 * 179.72518 * 22 21 20 24 24 C 1.38728 * 119.94540 * 0.56666 * 23 22 21 25 25 O 1.35900 * 120.06055 * 179.68311 * 24 23 22 26 26 C 1.38729 * 119.88811 * 359.70440 * 24 23 22 27 27 C 1.38147 * 119.94549 * 0.02562 * 26 24 23 28 28 C 1.47421 * 108.70450 * 1.06211 * 13 12 11 29 29 H 0.96999 * 120.00046 * 359.97438 * 1 2 3 30 30 H 0.96708 * 113.99322 * 303.89498 * 10 9 7 31 31 H 1.09000 * 110.72429 * 324.79291 * 11 9 7 32 32 H 1.09003 * 110.71831 * 88.06413 * 11 9 7 33 33 H 1.08996 * 109.88384 * 262.77575 * 12 11 9 34 34 H 1.09002 * 110.00880 * 141.68666 * 12 11 9 35 35 H 1.08995 * 109.47201 * 299.99171 * 16 14 13 36 36 H 1.08996 * 109.47240 * 59.99690 * 16 14 13 37 37 H 1.08995 * 109.47243 * 299.99927 * 17 16 14 38 38 H 1.09003 * 109.47257 * 60.00284 * 17 16 14 39 39 H 1.09003 * 109.47445 * 300.00016 * 18 17 16 40 40 H 1.08996 * 109.47640 * 60.00140 * 18 17 16 41 41 H 1.08995 * 109.46928 * 299.99927 * 19 18 17 42 42 H 1.09003 * 109.47241 * 60.00081 * 19 18 17 43 43 H 1.09010 * 109.46883 * 300.00453 * 20 19 18 44 44 H 1.09003 * 109.47127 * 59.99597 * 20 19 18 45 45 H 1.08005 * 119.97201 * 359.97438 * 22 21 20 46 46 H 1.08004 * 120.03067 * 180.25006 * 23 22 21 47 47 H 0.96697 * 114.00062 * 270.02853 * 25 24 23 48 48 H 1.08002 * 120.03559 * 179.97438 * 26 24 23 49 49 H 1.07993 * 119.97567 * 179.97438 * 27 26 24 50 50 H 1.09002 * 110.36865 * 217.03325 * 28 13 12 51 51 H 1.08994 * 110.46657 * 94.75473 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 0.3509 -2.5684 -1.1082 11 6 0.4997 -2.7074 1.3408 12 6 0.3981 -4.2438 1.4450 13 7 1.4591 -4.8098 0.5991 14 6 1.6918 -6.1230 0.4044 15 8 2.5989 -6.4774 -0.3184 16 6 0.8249 -7.1508 1.0849 17 6 1.2978 -8.5535 0.6979 18 6 0.4173 -9.5970 1.3882 19 6 0.8905 -10.9998 1.0018 20 6 0.0105 -12.0434 1.6926 21 6 0.4770 -13.4250 1.3125 22 6 -0.0581 -14.0532 0.2032 23 6 0.3719 -15.3174 -0.1507 24 6 1.3330 -15.9614 0.6148 25 8 1.7531 -17.2077 0.2725 26 6 1.8644 -15.3312 1.7307 27 6 1.4350 -14.0647 2.0772 28 6 2.2259 -3.7031 -0.0012 29 1 -0.4850 0.8400 0.0004 30 1 -0.2788 -1.8355 -1.1497 31 1 1.0755 -2.3016 2.1726 32 1 -0.4922 -2.2572 1.3011 33 1 -0.5769 -4.5759 1.0886 34 1 0.5412 -4.5578 2.4790 35 1 0.8963 -7.0283 2.1656 36 1 -0.2106 -7.0175 0.7717 37 1 1.2261 -8.6758 -0.3828 38 1 2.3333 -8.6871 1.0108 39 1 0.4885 -9.4749 2.4691 40 1 -0.6181 -9.4634 1.0750 41 1 0.8196 -11.1222 -0.0790 42 1 1.9259 -11.1332 1.3154 43 1 0.0818 -11.9207 2.7734 44 1 -1.0251 -11.9102 1.3794 45 1 -0.8101 -13.5536 -0.3896 46 1 -0.0435 -15.8061 -1.0197 47 1 1.2386 -17.9206 0.6751 48 1 2.6124 -15.8306 2.3286 49 1 1.8480 -13.5738 2.9459 50 1 2.5186 -3.9536 -1.0209 51 1 3.1062 -3.4787 0.6010 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592950328.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:35:46 Heat of formation + Delta-G solvation = -152.753864 kcal Electronic energy + Delta-G solvation = -28916.001778 eV Core-core repulsion = 24778.238342 eV Total energy + Delta-G solvation = -4137.763436 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.04462 -40.69328 -39.04684 -38.17456 -36.57403 -36.07782 -34.14459 -33.75095 -31.91563 -31.70893 -30.56623 -29.88131 -27.71058 -26.52011 -24.34343 -23.74181 -23.38696 -22.01298 -21.73683 -21.45946 -20.06829 -19.34333 -19.15860 -18.02939 -17.22276 -16.96544 -16.82685 -16.77159 -16.55611 -16.16589 -16.04225 -15.87780 -15.30786 -14.90014 -14.78428 -14.53959 -14.36842 -14.27825 -13.90246 -13.74195 -13.59586 -13.25380 -13.22271 -13.10127 -13.06699 -12.99865 -12.64496 -12.54619 -12.47098 -12.45231 -12.25805 -11.89419 -11.85910 -11.73380 -11.64335 -11.38625 -11.30659 -11.28817 -10.84861 -10.62549 -10.15122 -9.93209 -9.55007 -9.37321 -8.26038 -6.40577 0.28323 0.41048 1.41749 1.45110 1.53558 1.67999 2.11742 2.40057 2.68784 2.99036 3.33247 3.58386 3.79416 3.85526 3.91272 4.03679 4.06068 4.07861 4.13262 4.26107 4.30321 4.39683 4.41517 4.47539 4.57318 4.60509 4.61329 4.66813 4.78367 4.79129 4.89063 4.91225 4.98779 5.03654 5.04851 5.10762 5.14699 5.19347 5.29590 5.37911 5.39959 5.44637 5.45658 5.48330 5.53398 5.57368 5.73199 5.77079 5.94752 6.05389 6.61728 6.69327 6.85383 7.20391 7.30974 7.45220 8.80389 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.038714 B = 0.001343 C = 0.001335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.077529 B =20850.364394 C =20972.308286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.037 3.963 3 Si 0.960 3.040 4 H -0.280 1.280 5 H -0.276 1.276 6 H -0.271 1.271 7 C -0.564 4.564 8 H 0.055 0.945 9 C 0.233 3.767 10 O -0.596 6.596 11 C -0.131 4.131 12 C 0.107 3.893 13 N -0.614 5.614 14 C 0.510 3.490 15 O -0.601 6.601 16 C -0.123 4.123 17 C -0.100 4.100 18 C -0.109 4.109 19 C -0.111 4.111 20 C -0.075 4.075 21 C -0.096 4.096 22 C -0.109 4.109 23 C -0.156 4.156 24 C 0.084 3.916 25 O -0.514 6.514 26 C -0.155 4.155 27 C -0.108 4.108 28 C 0.123 3.877 29 H 0.273 0.727 30 H 0.381 0.619 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.119 0.881 36 H 0.110 0.890 37 H 0.047 0.953 38 H 0.053 0.947 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.053 0.947 42 H 0.056 0.944 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.139 0.861 46 H 0.136 0.864 47 H 0.408 0.592 48 H 0.137 0.863 49 H 0.141 0.859 50 H 0.040 0.960 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.591 -27.194 9.274 29.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.164 4.164 3 Si 0.786 3.214 4 H -0.206 1.206 5 H -0.201 1.201 6 H -0.196 1.196 7 C -0.602 4.602 8 H 0.073 0.927 9 C 0.192 3.808 10 O -0.406 6.406 11 C -0.170 4.170 12 C -0.014 4.014 13 N -0.346 5.346 14 C 0.302 3.698 15 O -0.483 6.483 16 C -0.162 4.162 17 C -0.138 4.138 18 C -0.146 4.146 19 C -0.149 4.149 20 C -0.112 4.112 21 C -0.096 4.096 22 C -0.127 4.127 23 C -0.174 4.174 24 C 0.039 3.961 25 O -0.327 6.327 26 C -0.174 4.174 27 C -0.126 4.126 28 C 0.000 4.000 29 H 0.083 0.917 30 H 0.233 0.767 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.112 0.888 35 H 0.137 0.863 36 H 0.128 0.872 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.104 0.896 44 H 0.101 0.899 45 H 0.157 0.843 46 H 0.154 0.846 47 H 0.267 0.733 48 H 0.155 0.845 49 H 0.158 0.842 50 H 0.059 0.941 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.531 -27.597 8.463 29.219 hybrid contribution 0.124 1.383 -0.186 1.401 sum -4.407 -26.215 8.277 27.841 Atomic orbital electron populations 1.69613 1.06669 1.28526 1.50098 1.25598 0.95836 1.02012 0.92931 0.85523 0.78775 0.79012 0.78091 1.20634 1.20093 1.19609 1.21727 0.93654 0.91771 1.53046 0.92679 1.19788 0.86439 0.90748 0.83776 1.86090 1.51136 1.52512 1.50883 1.22992 1.01701 0.92973 0.99294 1.22203 0.90221 0.94288 0.94725 1.48780 1.33243 1.05105 1.47496 1.21404 0.84955 0.82238 0.81211 1.90631 1.35389 1.80677 1.41602 1.21710 0.99665 0.92374 1.02480 1.21304 0.99808 0.92352 1.00358 1.21553 0.99418 0.92522 1.01123 1.21525 0.99375 0.93808 1.00187 1.20615 0.99929 0.89080 1.01562 1.20200 0.96934 0.96990 0.95509 1.21209 1.00243 0.94461 0.96822 1.21621 0.97786 0.96835 1.01166 1.18677 0.95667 0.87176 0.94532 1.84780 1.60193 1.14062 1.73690 1.21629 1.01723 0.96884 0.97116 1.21214 0.96750 0.94325 1.00330 1.22105 0.94759 0.86402 0.96753 0.91742 0.76732 0.91641 0.90936 0.90683 0.88848 0.86337 0.87227 0.93415 0.92836 0.90125 0.90544 0.92834 0.92546 0.89640 0.89852 0.84336 0.84640 0.73335 0.84542 0.84153 0.94123 0.91245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.12 10.79 21.45 0.23 -45.89 16 2 C 0.04 1.89 5.30 84.65 0.45 2.34 16 3 Si 0.96 40.85 29.54 68.60 2.03 42.88 16 4 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.28 -11.28 7.11 99.48 0.71 -10.58 16 6 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 7 C -0.56 -29.62 8.25 25.60 0.21 -29.41 16 8 H 0.05 2.92 7.77 -2.91 -0.02 2.89 16 9 C 0.23 11.33 0.89 -10.15 -0.01 11.32 16 10 O -0.60 -31.10 13.18 -148.98 -1.96 -33.06 16 11 C -0.13 -5.38 5.64 31.78 0.18 -5.20 16 12 C 0.11 3.50 6.49 86.73 0.56 4.06 16 13 N -0.61 -23.67 3.33 -811.79 -2.70 -26.37 16 14 C 0.51 18.60 7.85 87.66 0.69 19.29 16 15 O -0.60 -26.96 16.24 -3.04 -0.05 -27.01 16 16 C -0.12 -2.87 4.89 29.85 0.15 -2.72 16 17 C -0.10 -2.23 4.50 30.60 0.14 -2.09 16 18 C -0.11 -1.55 5.21 30.60 0.16 -1.39 16 19 C -0.11 -1.62 5.20 30.60 0.16 -1.46 16 20 C -0.07 -0.84 5.34 29.85 0.16 -0.68 16 21 C -0.10 -1.37 5.13 -19.85 -0.10 -1.47 16 22 C -0.11 -1.58 9.69 22.25 0.22 -1.37 16 23 C -0.16 -2.37 9.99 22.36 0.22 -2.15 16 24 C 0.08 1.34 6.70 22.50 0.15 1.49 16 25 O -0.51 -7.27 13.50 -92.43 -1.25 -8.52 16 26 C -0.16 -2.32 9.99 22.37 0.22 -2.10 16 27 C -0.11 -1.52 9.69 22.26 0.22 -1.31 16 28 C 0.12 5.66 6.08 86.86 0.53 6.19 16 29 H 0.27 13.13 8.31 -92.71 -0.77 12.36 16 30 H 0.38 20.00 6.93 -74.05 -0.51 19.49 16 31 H 0.06 2.68 8.03 -2.39 -0.02 2.66 16 32 H 0.07 3.12 7.85 -2.39 -0.02 3.10 16 33 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.11 2.18 8.14 -2.39 -0.02 2.17 16 37 H 0.05 1.25 8.10 -2.39 -0.02 1.23 16 38 H 0.05 1.34 8.10 -2.39 -0.02 1.32 16 39 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.08 0.93 8.14 -2.39 -0.02 0.92 16 41 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.09 0.77 8.08 -2.38 -0.02 0.75 16 44 H 0.08 0.79 8.08 -2.39 -0.02 0.77 16 45 H 0.14 1.56 8.06 -2.91 -0.02 1.53 16 46 H 0.14 1.70 8.06 -2.91 -0.02 1.67 16 47 H 0.41 1.64 9.06 -74.06 -0.67 0.97 16 48 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 49 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 50 H 0.04 2.06 8.04 -2.39 -0.02 2.04 16 51 H 0.07 3.13 8.01 -2.39 -0.02 3.11 16 Total: -1.00 -68.23 418.46 0.33 -67.89 By element: Atomic # 1 Polarization: 37.00 SS G_CDS: -0.26 Total: 36.74 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: 4.30 Total: -6.65 kcal Atomic # 7 Polarization: -69.79 SS G_CDS: -2.47 Total: -72.26 kcal Atomic # 8 Polarization: -65.33 SS G_CDS: -3.26 Total: -68.60 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.88 kcal Total: -68.23 0.33 -67.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592950328.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.860 kcal (2) G-P(sol) polarization free energy of solvation -68.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds