Wall clock time and date at job start Wed Apr 1 2020 05:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46500 * 119.99785 * 2 1 4 4 C 1.38610 * 119.99830 * 179.97438 * 2 1 3 5 5 C 1.39284 * 120.49355 * 5.25664 * 4 2 1 6 6 C 1.39022 * 118.26771 * 180.25602 * 5 4 2 7 7 N 1.38994 * 120.48550 * 179.75761 * 6 5 4 8 8 C 1.34775 * 120.00284 * 185.28173 * 7 6 5 9 9 O 1.21345 * 119.99966 * 355.40059 * 8 7 6 10 10 C 1.49378 * 119.99785 * 175.39639 * 8 7 6 11 11 O 1.21360 * 120.00307 * 353.60900 * 10 8 7 12 12 N 1.34772 * 120.00113 * 173.61093 * 10 8 7 13 13 C 1.46930 * 120.63119 * 351.04095 * 12 10 8 14 14 C 1.52763 * 109.00943 * 233.58630 * 13 12 10 15 15 C 1.53047 * 109.37803 * 305.58480 * 14 13 12 16 16 C 1.53036 * 109.53777 * 61.24066 * 15 14 13 17 17 H 1.09005 * 109.49871 * 58.58840 * 16 15 14 18 18 C 1.50703 * 109.52256 * 178.66421 * 16 15 14 19 19 H 1.07999 * 119.99726 * 34.39841 * 18 16 15 20 20 C 1.37878 * 120.00066 * 214.40104 * 18 16 15 21 21 N 1.31517 * 120.00135 * 184.14367 * 20 18 16 22 22 Si 1.86796 * 120.00063 * 4.14378 * 20 18 16 23 23 H 1.48501 * 109.47380 * 93.96481 * 22 20 18 24 24 H 1.48496 * 109.47151 * 213.96562 * 22 20 18 25 25 H 1.48506 * 109.47140 * 333.96516 * 22 20 18 26 26 C 1.46930 * 120.63372 * 171.31828 * 12 10 8 27 27 N 1.33153 * 119.04206 * 359.49038 * 6 5 4 28 28 C 1.31713 * 120.89598 * 0.27258 * 27 6 5 29 29 N 1.31770 * 121.91387 * 359.97438 * 28 27 6 30 30 H 1.09001 * 109.47299 * 270.00075 * 1 2 3 31 31 H 1.09005 * 109.46833 * 29.99784 * 1 2 3 32 32 H 1.08999 * 109.47490 * 149.99626 * 1 2 3 33 33 H 1.09000 * 109.47250 * 269.99839 * 3 2 1 34 34 H 1.08995 * 109.47083 * 30.00795 * 3 2 1 35 35 H 1.09008 * 109.46489 * 150.00190 * 3 2 1 36 36 H 1.08007 * 120.86504 * 0.02562 * 5 4 2 37 37 H 0.97007 * 119.99455 * 5.55995 * 7 6 5 38 38 H 1.09006 * 109.58131 * 353.41999 * 13 12 10 39 39 H 1.08995 * 109.58716 * 113.84235 * 13 12 10 40 40 H 1.08994 * 109.56513 * 185.55360 * 14 13 12 41 41 H 1.08999 * 109.36065 * 65.49221 * 14 13 12 42 42 H 1.09001 * 109.46067 * 301.21461 * 15 14 13 43 43 H 1.08998 * 109.44374 * 181.25566 * 15 14 13 44 44 H 0.96994 * 119.99900 * 180.02562 * 21 20 18 45 45 H 1.09000 * 109.58856 * 246.15614 * 26 12 10 46 46 H 1.09002 * 109.58463 * 6.43732 * 26 12 10 47 47 H 1.08003 * 119.04500 * 180.02562 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1580 -1.2004 0.0005 5 6 1.4764 -2.4101 -0.1089 6 6 2.2170 -3.5865 -0.0980 7 7 1.5836 -4.8196 -0.1993 8 6 2.2982 -5.9561 -0.0809 9 8 3.5055 -5.9049 0.0305 10 6 1.6041 -7.2788 -0.0868 11 8 0.3915 -7.3279 -0.0811 12 7 2.3244 -8.4178 -0.0984 13 6 3.7790 -8.3816 -0.3022 14 6 4.1429 -9.3126 -1.4574 15 6 3.5812 -10.7091 -1.1804 16 6 2.0560 -10.6363 -1.0784 17 1 1.6480 -10.2366 -2.0068 18 6 1.5009 -12.0167 -0.8383 19 1 2.0558 -12.7255 -0.2416 20 6 0.2847 -12.3745 -1.3803 21 7 -0.2382 -13.5493 -1.1043 22 14 -0.6204 -11.1908 -2.5068 23 1 -0.2775 -11.4922 -3.9199 24 1 -2.0845 -11.3416 -2.3097 25 1 -0.2187 -9.7975 -2.1863 26 6 1.6692 -9.7199 0.0866 27 7 3.5426 -3.5149 0.0056 28 6 4.1515 -2.3509 0.1021 29 7 3.4854 -1.2140 0.1004 30 1 -0.3634 0.0000 1.0277 31 1 -0.3633 0.8901 -0.5138 32 1 -0.3634 -0.8899 -0.5139 33 1 2.3792 1.5834 -1.0277 34 1 1.6085 2.0283 0.5139 35 1 3.1500 1.1383 0.5139 36 1 0.4001 -2.4337 -0.1961 37 1 0.6277 -4.8621 -0.3592 38 1 4.0890 -7.3646 -0.5428 39 1 4.2835 -8.7147 0.6047 40 1 5.2272 -9.3691 -1.5531 41 1 3.7152 -8.9253 -2.3821 42 1 3.9904 -11.0857 -0.2429 43 1 3.8593 -11.3799 -1.9933 44 1 -1.0935 -13.8012 -1.4860 45 1 1.9982 -10.1644 1.0259 46 1 0.5877 -9.5854 0.1050 47 1 5.2282 -2.3276 0.1843 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595084583.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:51:29 Heat of formation + Delta-G solvation = 26.057412 kcal Electronic energy + Delta-G solvation = -30482.492064 eV Core-core repulsion = 26281.234875 eV Total energy + Delta-G solvation = -4201.257189 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.57105 -40.56352 -38.73889 -37.39312 -37.18490 -35.60477 -33.30877 -32.42020 -31.92542 -31.32320 -30.52918 -28.70643 -26.77587 -25.95682 -25.19404 -24.25753 -23.55307 -21.86778 -21.63765 -20.43351 -19.21310 -18.48317 -17.89165 -17.24968 -16.81063 -16.48610 -16.20515 -15.97901 -15.78228 -15.56703 -15.18212 -14.70197 -14.61706 -14.38198 -14.24995 -14.06763 -13.66253 -13.59571 -13.24665 -13.07446 -12.73726 -12.62840 -12.50501 -12.50367 -12.25634 -11.87350 -11.74897 -11.14812 -10.88225 -10.84237 -10.79408 -10.73514 -10.46931 -10.13150 -9.71671 -9.69437 -9.42165 -9.18467 -9.16112 -8.73942 -8.60906 -8.32872 -8.19676 -6.14394 -4.15672 0.68730 1.09606 1.70031 2.08241 2.45700 3.25726 3.28743 3.38393 3.41150 3.46020 3.77395 4.00595 4.14577 4.37330 4.39628 4.55806 4.67572 4.74858 4.88610 5.00141 5.04496 5.16859 5.16971 5.23211 5.40416 5.41526 5.48745 5.63755 5.74871 5.96682 6.04434 6.16726 6.17171 6.22619 6.31838 6.45563 6.52156 6.59763 6.63142 6.77226 6.78932 6.81282 7.15417 7.23540 7.31952 7.55434 7.67973 7.72883 8.12980 8.14200 8.45397 8.91075 9.48536 10.97812 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020045 B = 0.002415 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.493226 B =11592.926069 C =12622.893466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.607 5.607 3 C 0.097 3.903 4 C 0.455 3.545 5 C -0.330 4.330 6 C 0.435 3.565 7 N -0.636 5.636 8 C 0.504 3.496 9 O -0.435 6.435 10 C 0.498 3.502 11 O -0.528 6.528 12 N -0.567 5.567 13 C 0.072 3.928 14 C -0.137 4.137 15 C -0.107 4.107 16 C 0.004 3.996 17 H 0.038 0.962 18 C -0.513 4.513 19 H 0.076 0.924 20 C 0.075 3.925 21 N -0.894 5.894 22 Si 0.871 3.129 23 H -0.278 1.278 24 H -0.287 1.287 25 H -0.256 1.256 26 C 0.109 3.891 27 N -0.551 5.551 28 C 0.367 3.633 29 N -0.596 5.596 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.050 0.950 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.144 0.856 37 H 0.430 0.570 38 H 0.126 0.874 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.060 0.940 44 H 0.265 0.735 45 H 0.069 0.931 46 H 0.084 0.916 47 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.546 28.670 1.781 29.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.320 5.320 3 C -0.046 4.046 4 C 0.214 3.786 5 C -0.361 4.361 6 C 0.199 3.801 7 N -0.284 5.284 8 C 0.285 3.715 9 O -0.303 6.303 10 C 0.279 3.721 11 O -0.407 6.407 12 N -0.299 5.299 13 C -0.049 4.049 14 C -0.175 4.175 15 C -0.144 4.144 16 C -0.015 4.015 17 H 0.056 0.944 18 C -0.551 4.551 19 H 0.094 0.906 20 C -0.128 4.128 21 N -0.531 5.531 22 Si 0.698 3.302 23 H -0.204 1.204 24 H -0.213 1.213 25 H -0.180 1.180 26 C -0.011 4.011 27 N -0.276 5.276 28 C 0.076 3.924 29 N -0.323 5.323 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.162 0.838 37 H 0.270 0.730 38 H 0.143 0.857 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.088 0.912 46 H 0.103 0.897 47 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 5.434 28.567 1.934 29.144 hybrid contribution -2.051 0.397 -0.739 2.217 sum 3.383 28.965 1.195 29.186 Atomic orbital electron populations 1.21801 0.77956 1.03463 1.02040 1.46187 1.05483 1.03041 1.77320 1.21644 0.97843 0.83496 1.01631 1.18114 0.88295 0.85571 0.86645 1.21387 1.01989 0.91084 1.21657 1.18258 0.89077 0.84641 0.88157 1.43332 1.13444 1.02803 1.68788 1.20911 0.87640 0.85515 0.77397 1.90616 1.12940 1.85439 1.41262 1.19704 0.87353 0.84816 0.80219 1.90760 1.13036 1.86796 1.50062 1.48472 1.09245 1.06295 1.65852 1.22671 0.78872 1.04338 0.99068 1.21947 1.00333 0.97323 0.97938 1.21608 0.97519 0.94052 1.01263 1.19525 0.92748 0.95399 0.93852 0.94382 1.20889 1.04740 0.95926 1.33570 0.90581 1.25095 0.96851 0.94982 0.95895 1.69904 1.18584 1.20725 1.43870 0.86912 0.79129 0.82830 0.81348 1.20410 1.21319 1.18006 1.22715 0.98404 0.78794 1.01199 1.68433 1.07609 1.29575 1.22003 1.24652 1.00426 0.80695 0.86600 1.67949 1.06615 1.32441 1.25304 0.92446 0.90616 0.90728 0.93102 0.91580 0.89857 0.83808 0.73034 0.85652 0.91393 0.91414 0.92410 0.92672 0.92150 0.92514 0.91224 0.89743 0.78359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.41 10.31 59.85 0.62 1.03 16 2 N -0.61 -4.57 3.38 -189.53 -0.64 -5.21 16 3 C 0.10 0.56 10.51 59.85 0.63 1.19 16 4 C 0.45 4.63 7.38 -154.73 -1.14 3.49 16 5 C -0.33 -3.32 9.19 -38.90 -0.36 -3.67 16 6 C 0.44 5.44 7.44 -154.42 -1.15 4.29 16 7 N -0.64 -8.08 5.36 -11.77 -0.06 -8.14 16 8 C 0.50 7.77 7.70 -11.62 -0.09 7.68 16 9 O -0.44 -7.11 11.49 5.50 0.06 -7.05 16 10 C 0.50 8.94 7.73 -11.62 -0.09 8.85 16 11 O -0.53 -10.55 15.94 5.49 0.09 -10.46 16 12 N -0.57 -10.51 2.98 -173.56 -0.52 -11.02 16 13 C 0.07 1.15 5.95 -3.93 -0.02 1.13 16 14 C -0.14 -2.20 6.07 -26.83 -0.16 -2.36 16 15 C -0.11 -2.04 5.15 -26.69 -0.14 -2.18 16 16 C 0.00 0.10 1.85 -91.66 -0.17 -0.07 16 17 H 0.04 0.91 5.15 -51.93 -0.27 0.64 16 18 C -0.51 -13.86 8.87 -34.44 -0.31 -14.17 16 19 H 0.08 2.22 8.06 -52.49 -0.42 1.79 16 20 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 21 N -0.89 -26.81 13.96 55.43 0.77 -26.04 16 22 Si 0.87 21.63 27.23 -169.99 -4.63 17.00 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.26 -6.30 6.45 56.52 0.36 -5.94 16 26 C 0.11 2.32 5.71 -3.71 -0.02 2.30 16 27 N -0.55 -7.43 8.04 -13.83 -0.11 -7.54 16 28 C 0.37 4.04 12.28 -92.24 -1.13 2.90 16 29 N -0.60 -6.49 9.22 -13.87 -0.13 -6.62 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.08 0.21 8.07 -51.93 -0.42 -0.21 16 32 H 0.07 0.32 6.04 -51.93 -0.31 0.00 16 33 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.07 0.24 8.07 -51.93 -0.42 -0.18 16 35 H 0.08 0.57 7.33 -51.92 -0.38 0.19 16 36 H 0.14 1.07 6.15 -52.48 -0.32 0.74 16 37 H 0.43 4.57 8.23 -40.82 -0.34 4.23 16 38 H 0.13 1.97 4.33 -54.74 -0.24 1.73 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 44 H 0.27 7.48 8.31 -40.82 -0.34 7.15 16 45 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 46 H 0.08 1.97 6.98 -51.93 -0.36 1.60 16 47 H 0.20 1.54 8.06 -52.48 -0.42 1.12 16 LS Contribution 379.78 15.07 5.72 5.72 Total: -1.00 -34.01 379.78 -9.53 -43.54 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -6.46 Total: 3.40 kcal Atomic # 6 Polarization: 16.05 SS G_CDS: -3.63 Total: 12.42 kcal Atomic # 7 Polarization: -63.88 SS G_CDS: -0.69 Total: -64.57 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: 0.15 Total: -17.51 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.63 Total: 17.00 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.01 -9.53 -43.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595084583.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.600 kcal (2) G-P(sol) polarization free energy of solvation -34.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds