Wall clock time and date at job start Wed Apr 1 2020 05:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46500 * 119.99785 * 2 1 4 4 C 1.38610 * 119.99830 * 179.97438 * 2 1 3 5 5 C 1.39284 * 120.49355 * 5.25664 * 4 2 1 6 6 C 1.39022 * 118.26771 * 180.25602 * 5 4 2 7 7 N 1.38994 * 120.48550 * 179.75761 * 6 5 4 8 8 C 1.34775 * 120.00284 * 185.28173 * 7 6 5 9 9 O 1.21345 * 119.99966 * 355.40059 * 8 7 6 10 10 C 1.49378 * 119.99785 * 175.39639 * 8 7 6 11 11 O 1.21360 * 120.00307 * 353.60900 * 10 8 7 12 12 N 1.34772 * 120.00113 * 173.61093 * 10 8 7 13 13 C 1.46930 * 120.63119 * 351.04095 * 12 10 8 14 14 C 1.52763 * 109.00943 * 233.58630 * 13 12 10 15 15 C 1.53047 * 109.37803 * 305.58480 * 14 13 12 16 16 C 1.53036 * 109.53777 * 61.24066 * 15 14 13 17 17 H 1.09005 * 109.49871 * 58.58840 * 16 15 14 18 18 C 1.50703 * 109.52256 * 178.66421 * 16 15 14 19 19 H 1.07999 * 119.99726 * 34.39841 * 18 16 15 20 20 C 1.37878 * 120.00066 * 214.40104 * 18 16 15 21 21 N 1.31517 * 120.00135 * 184.14367 * 20 18 16 22 22 Si 1.86796 * 120.00063 * 4.14378 * 20 18 16 23 23 H 1.48501 * 109.47380 * 93.96481 * 22 20 18 24 24 H 1.48496 * 109.47151 * 213.96562 * 22 20 18 25 25 H 1.48506 * 109.47140 * 333.96516 * 22 20 18 26 26 C 1.46930 * 120.63372 * 171.31828 * 12 10 8 27 27 N 1.33153 * 119.04206 * 359.49038 * 6 5 4 28 28 C 1.31713 * 120.89598 * 0.27258 * 27 6 5 29 29 N 1.31770 * 121.91387 * 359.97438 * 28 27 6 30 30 H 1.09001 * 109.47299 * 270.00075 * 1 2 3 31 31 H 1.09005 * 109.46833 * 29.99784 * 1 2 3 32 32 H 1.08999 * 109.47490 * 149.99626 * 1 2 3 33 33 H 1.09000 * 109.47250 * 269.99839 * 3 2 1 34 34 H 1.08995 * 109.47083 * 30.00795 * 3 2 1 35 35 H 1.09008 * 109.46489 * 150.00190 * 3 2 1 36 36 H 1.08007 * 120.86504 * 0.02562 * 5 4 2 37 37 H 0.97007 * 119.99455 * 5.55995 * 7 6 5 38 38 H 1.09006 * 109.58131 * 353.41999 * 13 12 10 39 39 H 1.08995 * 109.58716 * 113.84235 * 13 12 10 40 40 H 1.08994 * 109.56513 * 185.55360 * 14 13 12 41 41 H 1.08999 * 109.36065 * 65.49221 * 14 13 12 42 42 H 1.09001 * 109.46067 * 301.21461 * 15 14 13 43 43 H 1.08998 * 109.44374 * 181.25566 * 15 14 13 44 44 H 0.96994 * 119.99900 * 180.02562 * 21 20 18 45 45 H 1.09000 * 109.58856 * 246.15614 * 26 12 10 46 46 H 1.09002 * 109.58463 * 6.43732 * 26 12 10 47 47 H 1.08003 * 119.04500 * 180.02562 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1580 -1.2004 0.0005 5 6 1.4764 -2.4101 -0.1089 6 6 2.2170 -3.5865 -0.0980 7 7 1.5836 -4.8196 -0.1993 8 6 2.2982 -5.9561 -0.0809 9 8 3.5055 -5.9049 0.0305 10 6 1.6041 -7.2788 -0.0868 11 8 0.3915 -7.3279 -0.0811 12 7 2.3244 -8.4178 -0.0984 13 6 3.7790 -8.3816 -0.3022 14 6 4.1429 -9.3126 -1.4574 15 6 3.5812 -10.7091 -1.1804 16 6 2.0560 -10.6363 -1.0784 17 1 1.6480 -10.2366 -2.0068 18 6 1.5009 -12.0167 -0.8383 19 1 2.0558 -12.7255 -0.2416 20 6 0.2847 -12.3745 -1.3803 21 7 -0.2382 -13.5493 -1.1043 22 14 -0.6204 -11.1908 -2.5068 23 1 -0.2775 -11.4922 -3.9199 24 1 -2.0845 -11.3416 -2.3097 25 1 -0.2187 -9.7975 -2.1863 26 6 1.6692 -9.7199 0.0866 27 7 3.5426 -3.5149 0.0056 28 6 4.1515 -2.3509 0.1021 29 7 3.4854 -1.2140 0.1004 30 1 -0.3634 0.0000 1.0277 31 1 -0.3633 0.8901 -0.5138 32 1 -0.3634 -0.8899 -0.5139 33 1 2.3792 1.5834 -1.0277 34 1 1.6085 2.0283 0.5139 35 1 3.1500 1.1383 0.5139 36 1 0.4001 -2.4337 -0.1961 37 1 0.6277 -4.8621 -0.3592 38 1 4.0890 -7.3646 -0.5428 39 1 4.2835 -8.7147 0.6047 40 1 5.2272 -9.3691 -1.5531 41 1 3.7152 -8.9253 -2.3821 42 1 3.9904 -11.0857 -0.2429 43 1 3.8593 -11.3799 -1.9933 44 1 -1.0935 -13.8012 -1.4860 45 1 1.9982 -10.1644 1.0259 46 1 0.5877 -9.5854 0.1050 47 1 5.2282 -2.3276 0.1843 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595084583.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:51:28 Heat of formation + Delta-G solvation = 4.693441 kcal Electronic energy + Delta-G solvation = -30483.418476 eV Core-core repulsion = 26281.234875 eV Total energy + Delta-G solvation = -4202.183601 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.56870 -41.67849 -40.00122 -38.68880 -38.07292 -36.64411 -35.17018 -33.61617 -33.23129 -32.22232 -32.11602 -29.17654 -28.02100 -27.10097 -26.70554 -25.26408 -24.53860 -23.44040 -22.64291 -21.62088 -20.72798 -19.53832 -19.07729 -18.82051 -18.08443 -17.80323 -17.31090 -16.89030 -16.57523 -16.45324 -16.29883 -16.21142 -15.71301 -15.46326 -15.32222 -15.14072 -14.98758 -14.93119 -14.79194 -14.41373 -14.13969 -13.79071 -13.42124 -13.23659 -13.13080 -13.02105 -12.91752 -12.77524 -12.69031 -12.38152 -11.98913 -11.74745 -11.66441 -11.61514 -11.55814 -11.34578 -11.06567 -10.74794 -10.57897 -10.07119 -9.89199 -9.73116 -8.93569 -8.33490 -6.37060 -0.28420 0.25871 0.59174 0.95563 1.29188 1.35155 1.45913 1.84591 1.97776 2.21581 2.30903 2.92605 2.98152 3.04125 3.32151 3.51504 3.83272 4.01646 4.10406 4.14012 4.19842 4.26188 4.35473 4.45070 4.49189 4.51993 4.55133 4.67532 4.75338 4.78558 4.83342 4.90999 4.93722 4.97721 5.05194 5.07498 5.21665 5.27207 5.39266 5.47832 5.56034 5.61238 5.66524 5.80271 6.13994 6.16074 6.26834 6.35888 6.59572 6.71404 6.76826 7.29770 7.32573 8.82517 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020045 B = 0.002415 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.493226 B =11592.926069 C =12622.893466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.605 5.605 3 C 0.094 3.906 4 C 0.443 3.557 5 C -0.320 4.320 6 C 0.414 3.586 7 N -0.624 5.624 8 C 0.514 3.486 9 O -0.445 6.445 10 C 0.497 3.503 11 O -0.553 6.553 12 N -0.572 5.572 13 C 0.073 3.927 14 C -0.128 4.128 15 C -0.103 4.103 16 C 0.003 3.997 17 H 0.029 0.971 18 C -0.509 4.509 19 H 0.043 0.957 20 C 0.021 3.979 21 N -0.941 5.941 22 Si 0.932 3.068 23 H -0.268 1.268 24 H -0.287 1.287 25 H -0.254 1.254 26 C 0.120 3.880 27 N -0.582 5.582 28 C 0.362 3.638 29 N -0.602 5.602 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.078 0.922 33 H 0.055 0.945 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.169 0.831 37 H 0.439 0.561 38 H 0.136 0.864 39 H 0.080 0.920 40 H 0.102 0.898 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.266 0.734 45 H 0.071 0.929 46 H 0.060 0.940 47 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.005 32.169 1.238 32.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.317 5.317 3 C -0.049 4.049 4 C 0.200 3.800 5 C -0.352 4.352 6 C 0.178 3.822 7 N -0.273 5.273 8 C 0.295 3.705 9 O -0.314 6.314 10 C 0.279 3.721 11 O -0.432 6.432 12 N -0.304 5.304 13 C -0.047 4.047 14 C -0.166 4.166 15 C -0.141 4.141 16 C -0.016 4.016 17 H 0.047 0.953 18 C -0.548 4.548 19 H 0.062 0.938 20 C -0.178 4.178 21 N -0.580 5.580 22 Si 0.757 3.243 23 H -0.193 1.193 24 H -0.214 1.214 25 H -0.178 1.178 26 C -0.002 4.002 27 N -0.308 5.308 28 C 0.072 3.928 29 N -0.330 5.330 30 H 0.083 0.917 31 H 0.115 0.885 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.109 0.891 35 H 0.088 0.912 36 H 0.186 0.814 37 H 0.280 0.720 38 H 0.153 0.847 39 H 0.098 0.902 40 H 0.120 0.880 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.089 0.911 46 H 0.079 0.921 47 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 5.891 32.141 1.385 32.706 hybrid contribution -2.172 -0.552 -0.500 2.297 sum 3.719 31.589 0.885 31.820 Atomic orbital electron populations 1.22046 0.76158 1.04778 1.02951 1.46531 1.06701 1.02634 1.75817 1.21757 0.97698 0.83310 1.02092 1.18436 0.88343 0.86670 0.86565 1.21565 1.03102 0.90153 1.20344 1.18412 0.89372 0.84752 0.89618 1.43116 1.13706 1.02322 1.68154 1.20235 0.87336 0.85100 0.77816 1.90603 1.13080 1.85421 1.42302 1.20143 0.87107 0.85687 0.79176 1.90740 1.14215 1.87360 1.50897 1.48426 1.10312 1.05486 1.66183 1.22848 0.77198 1.04977 0.99666 1.21900 1.02273 0.94704 0.97709 1.21511 0.94792 0.96418 1.01382 1.19482 0.95241 0.93067 0.93857 0.95312 1.21145 1.04155 0.97471 1.32008 0.93845 1.25838 0.97950 0.96392 0.97605 1.70027 1.19393 1.22735 1.45858 0.85940 0.77728 0.80724 0.79866 1.19315 1.21371 1.17826 1.22203 0.97212 0.80324 1.00476 1.68374 1.08336 1.30846 1.23253 1.25122 1.01456 0.80190 0.86065 1.68023 1.07189 1.32307 1.25456 0.91663 0.88469 0.90334 0.92662 0.89112 0.91166 0.81377 0.72021 0.84673 0.90167 0.87970 0.92645 0.92396 0.92546 0.92440 0.91060 0.92133 0.76079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.49 10.31 127.77 1.32 1.80 16 2 N -0.60 -7.48 3.38 -753.56 -2.55 -10.03 16 3 C 0.09 0.85 10.51 127.77 1.34 2.19 16 4 C 0.44 8.09 7.38 133.02 0.98 9.07 16 5 C -0.32 -5.77 9.19 22.71 0.21 -5.56 16 6 C 0.41 9.70 7.44 132.81 0.99 10.69 16 7 N -0.62 -14.97 5.36 -309.51 -1.66 -16.63 16 8 C 0.51 15.18 7.70 87.25 0.67 15.85 16 9 O -0.45 -13.84 11.49 -3.23 -0.04 -13.88 16 10 C 0.50 17.39 7.73 87.25 0.67 18.06 16 11 O -0.55 -21.83 15.94 -3.28 -0.05 -21.88 16 12 N -0.57 -20.65 2.98 -821.39 -2.45 -23.09 16 13 C 0.07 2.19 5.95 86.22 0.51 2.70 16 14 C -0.13 -3.77 6.07 30.53 0.19 -3.58 16 15 C -0.10 -3.84 5.15 30.62 0.16 -3.68 16 16 C 0.00 0.14 1.85 -11.47 -0.02 0.12 16 17 H 0.03 1.36 5.15 -2.38 -0.01 1.35 16 18 C -0.51 -28.23 8.87 25.60 0.23 -28.00 16 19 H 0.04 2.63 8.06 -2.91 -0.02 2.61 16 20 C 0.02 1.18 5.47 84.65 0.46 1.65 16 21 N -0.94 -58.13 13.96 21.45 0.30 -57.83 16 22 Si 0.93 45.50 27.23 68.60 1.87 47.37 16 23 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 24 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 25 H -0.25 -12.22 6.45 99.48 0.64 -11.58 16 26 C 0.12 5.09 5.71 86.36 0.49 5.58 16 27 N -0.58 -14.92 8.04 -197.67 -1.59 -16.51 16 28 C 0.36 7.46 12.28 180.92 2.22 9.68 16 29 N -0.60 -12.16 9.22 -197.79 -1.82 -13.98 16 30 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.10 0.19 8.07 -2.38 -0.02 0.17 16 32 H 0.08 0.42 6.04 -2.39 -0.01 0.40 16 33 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.09 0.38 8.07 -2.39 -0.02 0.36 16 35 H 0.07 0.84 7.33 -2.38 -0.02 0.83 16 36 H 0.17 2.02 6.15 -2.91 -0.02 2.00 16 37 H 0.44 8.68 8.23 -92.70 -0.76 7.92 16 38 H 0.14 3.92 4.33 -47.01 -0.20 3.72 16 39 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 44 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 45 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 46 H 0.06 2.86 6.98 -2.39 -0.02 2.84 16 47 H 0.22 3.11 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -74.87 379.78 2.44 -72.44 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: 0.00 Total: 17.46 kcal Atomic # 6 Polarization: 26.15 SS G_CDS: 10.42 Total: 36.57 kcal Atomic # 7 Polarization: -128.31 SS G_CDS: -9.77 Total: -138.08 kcal Atomic # 8 Polarization: -35.67 SS G_CDS: -0.09 Total: -35.76 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.87 Total: 47.37 kcal Total: -74.87 2.44 -72.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595084583.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.129 kcal (2) G-P(sol) polarization free energy of solvation -74.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds