Wall clock time and date at job start Wed Apr 1 2020 05:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46902 * 111.00261 * 2 1 4 4 C 1.38670 * 111.00077 * 123.95469 * 2 1 3 5 5 N 1.32865 * 120.56884 * 348.02358 * 4 2 1 6 6 C 1.31811 * 120.76362 * 179.97438 * 5 4 2 7 7 N 1.31756 * 122.00228 * 0.02562 * 6 5 4 8 8 C 1.32524 * 121.07375 * 359.97438 * 7 6 5 9 9 C 1.38758 * 119.10634 * 0.02562 * 8 7 6 10 10 N 1.39926 * 120.90589 * 179.97438 * 9 8 7 11 11 C 1.34779 * 119.99755 * 334.86791 * 10 9 8 12 12 O 1.21398 * 119.99964 * 2.09371 * 11 10 9 13 13 C 1.49325 * 119.99881 * 182.08464 * 11 10 9 14 14 O 1.21361 * 120.00447 * 6.72119 * 13 11 10 15 15 N 1.34777 * 119.99727 * 186.71823 * 13 11 10 16 16 C 1.46922 * 120.63390 * 8.61286 * 15 13 11 17 17 C 1.53186 * 108.77953 * 126.36751 * 16 15 13 18 18 C 1.53046 * 109.31160 * 54.63416 * 17 16 15 19 19 C 1.53036 * 109.53766 * 298.63840 * 18 17 16 20 20 H 1.09008 * 109.49924 * 301.40783 * 19 18 17 21 21 C 1.50701 * 109.49791 * 181.31823 * 19 18 17 22 22 H 1.08000 * 120.00001 * 359.97438 * 21 19 18 23 23 C 1.37880 * 120.00145 * 180.02562 * 21 19 18 24 24 N 1.31513 * 119.99715 * 179.97438 * 23 21 19 25 25 Si 1.86798 * 119.99961 * 359.97438 * 23 21 19 26 26 H 1.48504 * 109.46850 * 90.00239 * 25 23 21 27 27 H 1.48495 * 109.47331 * 210.00095 * 25 23 21 28 28 H 1.48498 * 109.47087 * 330.00180 * 25 23 21 29 29 C 1.46927 * 120.62939 * 188.32981 * 15 13 11 30 30 H 1.09006 * 109.46696 * 300.00133 * 1 2 3 31 31 H 1.09006 * 109.47111 * 59.99830 * 1 2 3 32 32 H 1.09001 * 109.47297 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47024 * 185.41349 * 3 2 1 34 34 H 1.09003 * 109.47080 * 305.41629 * 3 2 1 35 35 H 1.08999 * 109.46733 * 65.41381 * 3 2 1 36 36 H 1.07997 * 118.99825 * 179.71667 * 6 5 4 37 37 H 1.08004 * 120.44808 * 179.97438 * 8 7 6 38 38 H 0.97000 * 120.00202 * 154.86592 * 10 9 8 39 39 H 1.09009 * 109.58679 * 246.15711 * 16 15 13 40 40 H 1.09002 * 109.58740 * 6.43308 * 16 15 13 41 41 H 1.08993 * 109.50126 * 174.58645 * 17 16 15 42 42 H 1.09000 * 109.50023 * 294.68744 * 17 16 15 43 43 H 1.08995 * 109.45903 * 58.65893 * 18 17 16 44 44 H 1.09000 * 109.45818 * 178.63210 * 18 17 16 45 45 H 0.97001 * 119.99271 * 179.97438 * 24 23 21 46 46 H 1.09000 * 109.58665 * 353.42257 * 29 15 13 47 47 H 1.09003 * 109.58692 * 113.84512 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9660 -0.7231 1.0738 5 7 1.1634 -1.1025 2.0624 6 6 1.6316 -1.7904 3.0847 7 7 2.9014 -2.1300 3.1748 8 6 3.7687 -1.7912 2.2319 9 6 3.3245 -1.0665 1.1351 10 7 4.2078 -0.6884 0.1179 11 6 5.5228 -0.5560 0.3821 12 8 5.9465 -0.8015 1.4929 13 6 6.4586 -0.1075 -0.6917 14 8 6.0223 0.2544 -1.7647 15 7 7.7879 -0.1046 -0.4691 16 6 8.3446 -0.7126 0.7471 17 6 9.4194 -1.7268 0.3438 18 6 10.4567 -1.0382 -0.5462 19 6 9.7786 -0.5218 -1.8172 20 1 9.3132 -1.3542 -2.3452 21 6 10.8066 0.1275 -2.7075 22 1 11.8405 0.1684 -2.3980 23 6 10.4271 0.6703 -3.9168 24 7 11.3241 1.2373 -4.6935 25 14 8.6387 0.6001 -4.4520 26 1 7.9293 1.8116 -3.9678 27 1 8.5674 0.5439 -5.9341 28 1 7.9978 -0.6108 -3.8793 29 6 8.7083 0.5011 -1.4410 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 3.0808 1.3439 -0.0970 34 1 1.5697 1.9241 -0.8375 35 1 1.7265 1.8638 0.9345 36 1 0.9547 -2.0801 3.8747 37 1 4.8075 -2.0746 2.3163 38 1 3.8738 -0.5217 -0.7774 39 1 8.7892 0.0619 1.3722 40 1 7.5518 -1.2172 1.2992 41 1 9.9073 -2.1148 1.2378 42 1 8.9575 -2.5479 -0.2045 43 1 10.9007 -0.2020 -0.0061 44 1 11.2358 -1.7517 -0.8147 45 1 11.0571 1.6188 -5.5445 46 1 8.1558 0.7949 -2.3335 47 1 9.1832 1.3766 -0.9981 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595086619.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:51:33 Heat of formation + Delta-G solvation = 29.236796 kcal Electronic energy + Delta-G solvation = -31484.334535 eV Core-core repulsion = 27283.215214 eV Total energy + Delta-G solvation = -4201.119321 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 2.61 seconds Orbital eigenvalues (eV) -42.04264 -40.79374 -38.91499 -38.03519 -37.32951 -35.68445 -33.40510 -33.22898 -32.05627 -30.78718 -30.59264 -28.28019 -26.63133 -26.06751 -25.25673 -24.65101 -22.71495 -22.63872 -22.07490 -20.60215 -19.36142 -18.35460 -18.02662 -17.90070 -17.15071 -16.73250 -16.58932 -16.11224 -15.86375 -15.35917 -15.22674 -14.86166 -14.58883 -14.40110 -14.26872 -14.12281 -13.81649 -13.69150 -13.22314 -12.91202 -12.80148 -12.67918 -12.62933 -12.26240 -12.24614 -12.01927 -11.68132 -11.56429 -11.18233 -11.14339 -11.00079 -10.61731 -10.46346 -10.21746 -9.84619 -9.80967 -9.62460 -9.43465 -9.21966 -9.00021 -8.69763 -8.57175 -8.29904 -6.17051 -4.19060 0.36523 0.68441 1.36523 2.07528 2.89906 3.06175 3.29269 3.35031 3.41718 3.47015 3.48297 3.79966 3.96642 4.15573 4.30382 4.34722 4.55691 4.76955 4.81323 5.01523 5.13767 5.14098 5.16702 5.30335 5.35200 5.37793 5.48353 5.52938 5.61757 5.88989 5.91207 5.99773 6.02854 6.05185 6.17248 6.33360 6.35401 6.46931 6.50606 6.62141 6.65489 6.70088 6.71732 7.06379 7.33224 7.35335 7.54388 7.62961 7.75918 7.99000 8.41830 8.86594 9.43652 10.94862 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016559 B = 0.003126 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.507568 B = 8953.892545 C =10379.618873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.486 5.486 3 C 0.022 3.978 4 C 0.328 3.672 5 N -0.535 5.535 6 C 0.293 3.707 7 N -0.513 5.513 8 C 0.149 3.851 9 C 0.042 3.958 10 N -0.627 5.627 11 C 0.512 3.488 12 O -0.494 6.494 13 C 0.499 3.501 14 O -0.523 6.523 15 N -0.565 5.565 16 C 0.071 3.929 17 C -0.137 4.137 18 C -0.103 4.103 19 C 0.005 3.995 20 H 0.032 0.968 21 C -0.516 4.516 22 H 0.079 0.921 23 C 0.072 3.928 24 N -0.894 5.894 25 Si 0.878 3.122 26 H -0.274 1.274 27 H -0.294 1.294 28 H -0.261 1.261 29 C 0.098 3.902 30 H 0.049 0.951 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.043 0.957 36 H 0.198 0.802 37 H 0.195 0.805 38 H 0.431 0.569 39 H 0.070 0.930 40 H 0.127 0.873 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.060 0.940 45 H 0.266 0.734 46 H 0.081 0.919 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.134 -3.569 13.909 24.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.205 5.205 3 C -0.124 4.124 4 C 0.085 3.915 5 N -0.254 5.254 6 C 0.004 3.996 7 N -0.228 5.228 8 C -0.017 4.017 9 C -0.061 4.061 10 N -0.274 5.274 11 C 0.297 3.703 12 O -0.369 6.369 13 C 0.280 3.720 14 O -0.401 6.401 15 N -0.297 5.297 16 C -0.050 4.050 17 C -0.175 4.175 18 C -0.141 4.141 19 C -0.014 4.014 20 H 0.050 0.950 21 C -0.554 4.554 22 H 0.097 0.903 23 C -0.131 4.131 24 N -0.531 5.531 25 Si 0.708 3.292 26 H -0.200 1.200 27 H -0.221 1.221 28 H -0.186 1.186 29 C -0.022 4.022 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.110 0.890 35 H 0.062 0.938 36 H 0.215 0.785 37 H 0.212 0.788 38 H 0.272 0.728 39 H 0.088 0.912 40 H 0.144 0.856 41 H 0.087 0.913 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.099 0.901 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -20.412 -3.861 14.138 25.128 hybrid contribution -0.815 0.784 -0.958 1.482 sum -21.226 -3.077 13.180 25.174 Atomic orbital electron populations 1.22306 0.83532 1.03645 1.01684 1.59183 1.11657 1.14668 1.34943 1.22595 1.01939 0.85346 1.02496 1.19914 0.88631 0.94282 0.88652 1.68436 1.39078 1.16100 1.01826 1.24789 0.90620 0.90381 0.93852 1.68546 1.03719 1.21954 1.28569 1.23867 1.01449 0.89212 0.87170 1.19173 0.90140 1.02514 0.94252 1.43156 1.05937 1.65016 1.13316 1.20899 0.82813 0.77433 0.89194 1.90449 1.74778 1.48005 1.23695 1.19542 0.83868 0.81527 0.87111 1.90793 1.76584 1.48274 1.24415 1.48404 1.04262 1.53953 1.23034 1.22793 0.99336 0.97099 0.85819 1.22006 0.97218 0.98076 1.00179 1.21477 0.96969 0.99498 0.96114 1.19416 0.93466 0.94474 0.94062 0.94998 1.20948 0.95212 1.37690 1.01579 0.90297 1.25069 0.97314 0.94392 0.96302 1.69888 1.33788 1.37763 1.11651 0.87000 0.85067 0.80007 0.77164 1.20032 1.22137 1.18590 1.22818 0.90440 0.97978 0.90945 0.93192 0.90533 0.90501 0.90283 0.89027 0.93802 0.78512 0.78844 0.72830 0.91216 0.85557 0.91277 0.92162 0.92392 0.92087 0.92430 0.90137 0.90569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 8.78 60.06 0.53 0.79 16 2 N -0.49 -4.51 4.58 -188.57 -0.86 -5.37 16 3 C 0.02 0.18 9.20 60.07 0.55 0.74 16 4 C 0.33 3.54 6.16 -154.52 -0.95 2.58 16 5 N -0.54 -5.54 8.97 -13.64 -0.12 -5.66 16 6 C 0.29 2.81 12.27 -92.17 -1.13 1.68 16 7 N -0.51 -5.79 10.43 -14.50 -0.15 -5.94 16 8 C 0.15 1.75 10.05 -17.06 -0.17 1.58 16 9 C 0.04 0.48 6.29 -83.21 -0.52 -0.04 16 10 N -0.63 -7.42 3.99 -9.97 -0.04 -7.46 16 11 C 0.51 7.02 7.63 -11.64 -0.09 6.93 16 12 O -0.49 -6.71 10.20 5.46 0.06 -6.65 16 13 C 0.50 8.54 7.73 -11.64 -0.09 8.45 16 14 O -0.52 -10.28 15.93 5.49 0.09 -10.19 16 15 N -0.56 -10.08 2.98 -173.59 -0.52 -10.59 16 16 C 0.07 1.04 5.99 -3.72 -0.02 1.02 16 17 C -0.14 -2.03 6.08 -26.61 -0.16 -2.19 16 18 C -0.10 -1.89 5.11 -26.69 -0.14 -2.02 16 19 C 0.01 0.12 1.83 -91.88 -0.17 -0.05 16 20 H 0.03 0.76 7.20 -51.92 -0.37 0.39 16 21 C -0.52 -13.89 9.15 -34.44 -0.31 -14.20 16 22 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 23 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 24 N -0.89 -26.74 13.96 55.43 0.77 -25.97 16 25 Si 0.88 22.21 24.32 -169.99 -4.13 18.08 16 26 H -0.27 -6.88 6.92 56.52 0.39 -6.49 16 27 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 28 H -0.26 -6.56 6.53 56.52 0.37 -6.19 16 29 C 0.10 2.08 5.10 -3.94 -0.02 2.06 16 30 H 0.05 0.38 7.93 -51.93 -0.41 -0.04 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.60 8.03 -51.93 -0.42 0.19 16 33 H 0.08 0.74 6.30 -51.93 -0.33 0.41 16 34 H 0.09 0.59 8.13 -51.93 -0.42 0.17 16 35 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.20 1.18 8.06 -52.49 -0.42 0.76 16 37 H 0.20 2.29 5.67 -52.48 -0.30 1.99 16 38 H 0.43 4.95 7.34 -40.82 -0.30 4.65 16 39 H 0.07 0.97 8.14 -51.92 -0.42 0.54 16 40 H 0.13 1.73 4.30 -54.85 -0.24 1.49 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 45 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 46 H 0.08 1.90 2.31 -51.93 -0.12 1.78 16 47 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 LS Contribution 369.43 15.07 5.57 5.57 Total: -1.00 -31.51 369.43 -8.45 -39.96 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -6.31 Total: 4.97 kcal Atomic # 6 Polarization: 12.07 SS G_CDS: -2.80 Total: 9.27 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: -0.92 Total: -60.99 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: 0.14 Total: -16.85 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.13 Total: 18.08 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.51 -8.45 -39.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595086619.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.192 kcal (2) G-P(sol) polarization free energy of solvation -31.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.61 seconds