Wall clock time and date at job start Wed Apr 1 2020 05:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46902 * 111.00261 * 2 1 4 4 C 1.38670 * 111.00077 * 123.95469 * 2 1 3 5 5 N 1.32865 * 120.56884 * 348.02358 * 4 2 1 6 6 C 1.31811 * 120.76362 * 179.97438 * 5 4 2 7 7 N 1.31756 * 122.00228 * 0.02562 * 6 5 4 8 8 C 1.32524 * 121.07375 * 359.97438 * 7 6 5 9 9 C 1.38758 * 119.10634 * 0.02562 * 8 7 6 10 10 N 1.39926 * 120.90589 * 179.97438 * 9 8 7 11 11 C 1.34779 * 119.99755 * 334.86791 * 10 9 8 12 12 O 1.21398 * 119.99964 * 2.09371 * 11 10 9 13 13 C 1.49325 * 119.99881 * 182.08464 * 11 10 9 14 14 O 1.21361 * 120.00447 * 6.72119 * 13 11 10 15 15 N 1.34777 * 119.99727 * 186.71823 * 13 11 10 16 16 C 1.46922 * 120.63390 * 8.61286 * 15 13 11 17 17 C 1.53186 * 108.77953 * 126.36751 * 16 15 13 18 18 C 1.53046 * 109.31160 * 54.63416 * 17 16 15 19 19 C 1.53036 * 109.53766 * 298.63840 * 18 17 16 20 20 H 1.09008 * 109.49924 * 301.40783 * 19 18 17 21 21 C 1.50701 * 109.49791 * 181.31823 * 19 18 17 22 22 H 1.08000 * 120.00001 * 359.97438 * 21 19 18 23 23 C 1.37880 * 120.00145 * 180.02562 * 21 19 18 24 24 N 1.31513 * 119.99715 * 179.97438 * 23 21 19 25 25 Si 1.86798 * 119.99961 * 359.97438 * 23 21 19 26 26 H 1.48504 * 109.46850 * 90.00239 * 25 23 21 27 27 H 1.48495 * 109.47331 * 210.00095 * 25 23 21 28 28 H 1.48498 * 109.47087 * 330.00180 * 25 23 21 29 29 C 1.46927 * 120.62939 * 188.32981 * 15 13 11 30 30 H 1.09006 * 109.46696 * 300.00133 * 1 2 3 31 31 H 1.09006 * 109.47111 * 59.99830 * 1 2 3 32 32 H 1.09001 * 109.47297 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47024 * 185.41349 * 3 2 1 34 34 H 1.09003 * 109.47080 * 305.41629 * 3 2 1 35 35 H 1.08999 * 109.46733 * 65.41381 * 3 2 1 36 36 H 1.07997 * 118.99825 * 179.71667 * 6 5 4 37 37 H 1.08004 * 120.44808 * 179.97438 * 8 7 6 38 38 H 0.97000 * 120.00202 * 154.86592 * 10 9 8 39 39 H 1.09009 * 109.58679 * 246.15711 * 16 15 13 40 40 H 1.09002 * 109.58740 * 6.43308 * 16 15 13 41 41 H 1.08993 * 109.50126 * 174.58645 * 17 16 15 42 42 H 1.09000 * 109.50023 * 294.68744 * 17 16 15 43 43 H 1.08995 * 109.45903 * 58.65893 * 18 17 16 44 44 H 1.09000 * 109.45818 * 178.63210 * 18 17 16 45 45 H 0.97001 * 119.99271 * 179.97438 * 24 23 21 46 46 H 1.09000 * 109.58665 * 353.42257 * 29 15 13 47 47 H 1.09003 * 109.58692 * 113.84512 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9660 -0.7231 1.0738 5 7 1.1634 -1.1025 2.0624 6 6 1.6316 -1.7904 3.0847 7 7 2.9014 -2.1300 3.1748 8 6 3.7687 -1.7912 2.2319 9 6 3.3245 -1.0665 1.1351 10 7 4.2078 -0.6884 0.1179 11 6 5.5228 -0.5560 0.3821 12 8 5.9465 -0.8015 1.4929 13 6 6.4586 -0.1075 -0.6917 14 8 6.0223 0.2544 -1.7647 15 7 7.7879 -0.1046 -0.4691 16 6 8.3446 -0.7126 0.7471 17 6 9.4194 -1.7268 0.3438 18 6 10.4567 -1.0382 -0.5462 19 6 9.7786 -0.5218 -1.8172 20 1 9.3132 -1.3542 -2.3452 21 6 10.8066 0.1275 -2.7075 22 1 11.8405 0.1684 -2.3980 23 6 10.4271 0.6703 -3.9168 24 7 11.3241 1.2373 -4.6935 25 14 8.6387 0.6001 -4.4520 26 1 7.9293 1.8116 -3.9678 27 1 8.5674 0.5439 -5.9341 28 1 7.9978 -0.6108 -3.8793 29 6 8.7083 0.5011 -1.4410 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 3.0808 1.3439 -0.0970 34 1 1.5697 1.9241 -0.8375 35 1 1.7265 1.8638 0.9345 36 1 0.9547 -2.0801 3.8747 37 1 4.8075 -2.0746 2.3163 38 1 3.8738 -0.5217 -0.7774 39 1 8.7892 0.0619 1.3722 40 1 7.5518 -1.2172 1.2992 41 1 9.9073 -2.1148 1.2378 42 1 8.9575 -2.5479 -0.2045 43 1 10.9007 -0.2020 -0.0061 44 1 11.2358 -1.7517 -0.8147 45 1 11.0571 1.6188 -5.5445 46 1 8.1558 0.7949 -2.3335 47 1 9.1832 1.3766 -0.9981 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595086619.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:51:32 Heat of formation + Delta-G solvation = 7.585146 kcal Electronic energy + Delta-G solvation = -31485.273421 eV Core-core repulsion = 27283.215214 eV Total energy + Delta-G solvation = -4202.058207 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.95935 -41.90458 -40.15768 -38.84090 -38.68029 -36.71840 -35.22365 -34.02123 -33.67596 -32.31327 -31.60802 -28.90988 -27.95015 -26.99633 -26.83448 -25.73853 -23.82709 -23.63365 -23.40433 -21.80813 -20.81916 -19.49322 -18.96062 -18.91616 -18.69394 -18.07541 -17.92680 -17.23008 -16.79691 -16.42906 -16.27104 -16.04223 -15.81848 -15.60289 -15.45322 -15.17772 -15.10075 -14.93533 -14.76598 -14.40353 -14.24979 -13.76084 -13.44211 -13.35715 -13.25422 -13.04593 -12.85889 -12.64445 -12.48273 -12.46515 -12.33380 -12.11246 -11.95855 -11.77842 -11.61084 -11.33346 -11.07879 -10.80860 -10.63729 -10.38617 -10.16849 -9.79568 -9.39585 -8.37723 -6.41128 -0.52823 -0.14158 0.26257 0.92355 1.25694 1.32473 1.42397 1.83685 2.18275 2.18973 2.24195 2.64477 2.95354 2.98759 3.06849 3.21564 3.54118 3.73516 3.93564 4.06060 4.12099 4.15503 4.18123 4.33814 4.38594 4.43812 4.49747 4.57586 4.60489 4.69432 4.73726 4.74394 4.91261 4.95611 5.01776 5.05421 5.17698 5.20606 5.28526 5.33521 5.48440 5.56306 5.62212 5.67566 5.76607 5.88483 6.11955 6.24593 6.38264 6.64675 6.69505 6.97231 7.24542 8.78178 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016559 B = 0.003126 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.507568 B = 8953.892545 C =10379.618873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.492 5.492 3 C 0.024 3.976 4 C 0.331 3.669 5 N -0.540 5.540 6 C 0.298 3.702 7 N -0.528 5.528 8 C 0.146 3.854 9 C 0.025 3.975 10 N -0.613 5.613 11 C 0.525 3.475 12 O -0.491 6.491 13 C 0.496 3.504 14 O -0.552 6.552 15 N -0.571 5.571 16 C 0.070 3.930 17 C -0.128 4.128 18 C -0.100 4.100 19 C 0.005 3.995 20 H 0.018 0.982 21 C -0.513 4.513 22 H 0.049 0.951 23 C 0.025 3.975 24 N -0.938 5.938 25 Si 0.936 3.064 26 H -0.273 1.273 27 H -0.295 1.295 28 H -0.261 1.261 29 C 0.105 3.895 30 H 0.050 0.950 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.110 0.890 35 H 0.045 0.955 36 H 0.232 0.768 37 H 0.192 0.808 38 H 0.433 0.567 39 H 0.083 0.917 40 H 0.144 0.856 41 H 0.105 0.895 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.057 0.943 45 H 0.267 0.733 46 H 0.058 0.942 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.687 -4.307 16.057 28.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.211 5.211 3 C -0.121 4.121 4 C 0.087 3.913 5 N -0.259 5.259 6 C 0.009 3.991 7 N -0.243 5.243 8 C -0.019 4.019 9 C -0.077 4.077 10 N -0.260 5.260 11 C 0.309 3.691 12 O -0.367 6.367 13 C 0.279 3.721 14 O -0.431 6.431 15 N -0.302 5.302 16 C -0.050 4.050 17 C -0.165 4.165 18 C -0.138 4.138 19 C -0.015 4.015 20 H 0.036 0.964 21 C -0.551 4.551 22 H 0.068 0.932 23 C -0.173 4.173 24 N -0.578 5.578 25 Si 0.764 3.236 26 H -0.199 1.199 27 H -0.222 1.222 28 H -0.186 1.186 29 C -0.016 4.016 30 H 0.068 0.932 31 H 0.113 0.887 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.128 0.872 35 H 0.064 0.936 36 H 0.248 0.752 37 H 0.209 0.791 38 H 0.274 0.726 39 H 0.101 0.899 40 H 0.161 0.839 41 H 0.124 0.876 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -22.997 -4.617 16.323 28.576 hybrid contribution -0.065 0.988 -1.559 1.847 sum -23.062 -3.630 14.763 27.622 Atomic orbital electron populations 1.22357 0.82315 1.03632 1.02630 1.59216 1.12737 1.15014 1.34139 1.22617 1.01193 0.84917 1.03419 1.20120 0.88371 0.93893 0.88888 1.68555 1.38872 1.16533 1.01983 1.25511 0.90551 0.88886 0.94120 1.68596 1.04398 1.22669 1.28638 1.23859 1.01605 0.89147 0.87334 1.19178 0.90403 1.03766 0.94330 1.42925 1.05182 1.64306 1.13590 1.20039 0.82993 0.77997 0.88117 1.90443 1.74844 1.48353 1.23091 1.20045 0.83949 0.80660 0.87486 1.90770 1.77116 1.49338 1.25911 1.48368 1.04382 1.54213 1.23240 1.23048 0.99825 0.97427 0.84673 1.21969 0.96226 0.97590 1.00762 1.21417 0.97703 0.99797 0.94857 1.19343 0.92992 0.93952 0.95209 0.96387 1.21267 0.95140 1.36605 1.02093 0.93226 1.25704 1.00369 0.94563 0.96700 1.69998 1.35577 1.39786 1.12429 0.86074 0.81188 0.79883 0.76424 1.19908 1.22213 1.18572 1.22310 0.90481 0.97615 0.91192 0.93155 0.88673 0.90985 0.91611 0.87159 0.93628 0.75188 0.79128 0.72625 0.89876 0.83909 0.87640 0.92349 0.92103 0.92440 0.92326 0.92438 0.90523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 8.78 127.69 1.12 1.59 16 2 N -0.49 -8.13 4.58 -750.50 -3.44 -11.57 16 3 C 0.02 0.35 9.20 127.69 1.17 1.53 16 4 C 0.33 6.47 6.16 133.31 0.82 7.29 16 5 N -0.54 -9.89 8.97 -197.07 -1.77 -11.66 16 6 C 0.30 4.92 12.27 180.89 2.22 7.14 16 7 N -0.53 -10.75 10.43 -199.80 -2.08 -12.84 16 8 C 0.15 3.16 10.05 84.71 0.85 4.01 16 9 C 0.03 0.54 6.29 38.47 0.24 0.78 16 10 N -0.61 -13.60 3.99 -303.79 -1.21 -14.81 16 11 C 0.53 13.50 7.63 87.23 0.67 14.16 16 12 O -0.49 -12.21 10.20 -3.40 -0.03 -12.24 16 13 C 0.50 16.40 7.73 87.23 0.67 17.08 16 14 O -0.55 -21.36 15.93 -3.28 -0.05 -21.41 16 15 N -0.57 -19.56 2.98 -821.48 -2.45 -22.01 16 16 C 0.07 1.88 5.99 86.36 0.52 2.40 16 17 C -0.13 -3.43 6.08 30.67 0.19 -3.24 16 18 C -0.10 -3.55 5.11 30.62 0.16 -3.40 16 19 C 0.00 0.21 1.83 -11.61 -0.02 0.19 16 20 H 0.02 0.86 7.20 -2.38 -0.02 0.84 16 21 C -0.51 -28.26 9.15 25.60 0.23 -28.03 16 22 H 0.05 2.97 7.99 -2.91 -0.02 2.94 16 23 C 0.03 1.46 5.45 84.66 0.46 1.93 16 24 N -0.94 -57.79 13.96 21.45 0.30 -57.49 16 25 Si 0.94 47.18 24.32 68.60 1.67 48.85 16 26 H -0.27 -13.56 6.92 99.48 0.69 -12.87 16 27 H -0.29 -14.70 7.11 99.48 0.71 -13.99 16 28 H -0.26 -12.98 6.53 99.48 0.65 -12.33 16 29 C 0.11 4.45 5.10 86.22 0.44 4.89 16 30 H 0.05 0.64 7.93 -2.38 -0.02 0.62 16 31 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.07 0.98 8.03 -2.39 -0.02 0.96 16 33 H 0.07 1.14 6.30 -2.39 -0.02 1.13 16 34 H 0.11 1.16 8.13 -2.39 -0.02 1.14 16 35 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.23 1.97 8.06 -2.91 -0.02 1.94 16 37 H 0.19 4.15 5.67 -2.91 -0.02 4.14 16 38 H 0.43 9.42 7.34 -92.71 -0.68 8.73 16 39 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 40 H 0.14 3.45 4.30 -48.64 -0.21 3.24 16 41 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 46 H 0.06 2.71 2.31 -2.39 -0.01 2.70 16 47 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 Total: -1.00 -69.20 369.43 0.75 -68.46 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 0.07 Total: 18.42 kcal Atomic # 6 Polarization: 18.56 SS G_CDS: 9.74 Total: 28.31 kcal Atomic # 7 Polarization: -119.73 SS G_CDS: -10.65 Total: -130.38 kcal Atomic # 8 Polarization: -33.56 SS G_CDS: -0.09 Total: -33.65 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 1.67 Total: 48.85 kcal Total: -69.20 0.75 -68.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595086619.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.041 kcal (2) G-P(sol) polarization free energy of solvation -69.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds