Wall clock time and date at job start Wed Apr 1 2020 05:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46896 * 110.99885 * 2 1 4 4 C 1.38677 * 111.00065 * 123.94716 * 2 1 3 5 5 N 1.32857 * 120.56841 * 351.54715 * 4 2 1 6 6 C 1.31818 * 120.76798 * 180.02562 * 5 4 2 7 7 N 1.31757 * 121.99330 * 0.02562 * 6 5 4 8 8 C 1.32520 * 121.08153 * 359.97438 * 7 6 5 9 9 C 1.38763 * 119.10085 * 0.02562 * 8 7 6 10 10 N 1.39921 * 120.90149 * 180.02562 * 9 8 7 11 11 C 1.34778 * 120.00083 * 337.29825 * 10 9 8 12 12 O 1.21386 * 120.00007 * 354.73989 * 11 10 9 13 13 C 1.49327 * 120.00042 * 174.74310 * 11 10 9 14 14 O 1.21368 * 120.00248 * 7.39109 * 13 11 10 15 15 N 1.34782 * 119.99885 * 187.39762 * 13 11 10 16 16 C 1.46918 * 120.63204 * 6.19819 * 15 13 11 17 17 C 1.52761 * 109.00944 * 233.58616 * 16 15 13 18 18 C 1.53038 * 109.38054 * 305.58494 * 17 16 15 19 19 C 1.53039 * 109.53686 * 61.24270 * 18 17 16 20 20 H 1.08992 * 109.50315 * 58.58564 * 19 18 17 21 21 C 1.50707 * 109.52404 * 178.66872 * 19 18 17 22 22 H 1.08002 * 119.99714 * 359.84476 * 21 19 18 23 23 C 1.37871 * 119.99991 * 179.85533 * 21 19 18 24 24 N 1.31522 * 120.00058 * 359.97438 * 23 21 19 25 25 Si 1.86802 * 119.99946 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.46897 * 90.00028 * 25 23 21 27 27 H 1.48499 * 109.46963 * 209.99375 * 25 23 21 28 28 H 1.48491 * 109.47140 * 330.00108 * 25 23 21 29 29 C 1.46925 * 120.63002 * 186.47840 * 15 13 11 30 30 H 1.08998 * 109.47362 * 296.04816 * 1 2 3 31 31 H 1.09000 * 109.46901 * 56.05234 * 1 2 3 32 32 H 1.09008 * 109.46826 * 176.05133 * 1 2 3 33 33 H 1.09000 * 109.47321 * 189.19043 * 3 2 1 34 34 H 1.09004 * 109.47091 * 309.18388 * 3 2 1 35 35 H 1.08998 * 109.47586 * 69.18573 * 3 2 1 36 36 H 1.07999 * 119.00275 * 179.71247 * 6 5 4 37 37 H 1.08000 * 120.45184 * 180.02562 * 8 7 6 38 38 H 0.97002 * 120.00178 * 157.30077 * 10 9 8 39 39 H 1.09008 * 109.58603 * 353.41584 * 16 15 13 40 40 H 1.08997 * 109.59218 * 113.84179 * 16 15 13 41 41 H 1.09002 * 109.56570 * 185.54663 * 17 16 15 42 42 H 1.09000 * 109.36114 * 65.49604 * 17 16 15 43 43 H 1.08995 * 109.46160 * 301.22149 * 18 17 16 44 44 H 1.08998 * 109.44928 * 181.25170 * 18 17 16 45 45 H 0.96999 * 119.99944 * 180.02562 * 24 23 21 46 46 H 1.09006 * 109.58618 * 246.15545 * 29 15 13 47 47 H 1.09001 * 109.58779 * 6.57568 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9660 -0.7230 1.0740 5 7 1.1518 -1.1622 2.0275 6 6 1.6200 -1.8493 3.0504 7 7 2.9014 -2.1296 3.1751 8 6 3.7808 -1.7289 2.2684 9 6 3.3370 -1.0022 1.1728 10 7 4.2326 -0.5608 0.1926 11 6 5.5398 -0.4192 0.4889 12 8 5.9250 -0.5819 1.6284 13 6 6.5143 -0.0620 -0.5847 14 8 6.1157 0.2320 -1.6928 15 7 7.8365 -0.0661 -0.3233 16 6 8.3426 -0.5488 0.9687 17 6 9.2341 0.5265 1.5871 18 6 10.3272 0.9155 0.5892 19 6 9.6847 1.4875 -0.6765 20 1 9.0774 2.3544 -0.4165 21 6 10.7622 1.9007 -1.6458 22 1 11.8021 1.7711 -1.3846 23 6 10.4204 2.4444 -2.8658 24 7 9.1540 2.6019 -3.1840 25 14 11.7560 2.9573 -4.0669 26 1 12.0928 1.8126 -4.9510 27 1 11.2709 4.0932 -4.8912 28 1 12.9660 3.3735 -3.3135 29 6 8.7987 0.4178 -1.3227 30 1 -0.3634 0.4513 0.9232 31 1 -0.3633 0.5739 -0.8525 32 1 -0.3633 -1.0253 -0.0708 33 1 3.0727 1.3471 -0.1641 34 1 1.5194 1.9433 -0.7966 35 1 1.7847 1.8415 0.9605 36 1 0.9332 -2.1885 3.8117 37 1 4.8287 -1.9648 2.3806 38 1 3.9128 -0.3567 -0.7001 39 1 7.5051 -0.7549 1.6353 40 1 8.9237 -1.4584 0.8168 41 1 9.6931 0.1410 2.4975 42 1 8.6310 1.4025 1.8259 43 1 10.9144 0.0341 0.3318 44 1 10.9774 1.6667 1.0376 45 1 8.9136 2.9841 -4.0425 46 1 9.4178 -0.4113 -1.6653 47 1 8.2620 0.8493 -2.1676 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595086621.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:51:45 Heat of formation + Delta-G solvation = 25.371533 kcal Electronic energy + Delta-G solvation = -31345.403038 eV Core-core repulsion = 27144.116107 eV Total energy + Delta-G solvation = -4201.286931 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -41.93206 -40.58899 -38.59592 -37.95354 -37.04817 -35.53590 -33.34190 -33.12657 -31.85377 -30.63248 -29.84493 -28.20295 -26.42832 -25.94434 -25.12615 -24.43845 -22.62664 -22.48144 -21.87910 -20.52868 -19.17768 -18.20403 -17.89782 -17.72317 -16.98022 -16.48183 -15.97419 -15.84187 -15.65277 -15.27962 -15.01411 -14.75980 -14.63946 -14.42591 -14.01472 -13.98648 -13.61276 -13.48658 -12.93378 -12.72828 -12.67880 -12.56631 -12.24080 -12.13467 -11.96754 -11.75652 -11.49494 -11.42078 -11.09702 -11.03071 -10.76327 -10.54215 -10.36135 -10.17006 -9.98538 -9.69745 -9.45599 -9.26470 -9.18886 -8.69093 -8.50597 -8.43116 -7.96177 -6.08380 -4.16351 0.48432 0.78326 1.58083 2.28144 2.99026 3.26329 3.33245 3.34124 3.36594 3.56494 3.67737 3.89075 4.06380 4.35369 4.38571 4.41228 4.66893 4.86557 4.92140 5.10150 5.22412 5.23738 5.26386 5.46763 5.50346 5.59287 5.60339 5.66430 5.87479 5.99417 6.10272 6.16206 6.30670 6.37853 6.50249 6.59218 6.64438 6.71278 6.80208 6.83539 6.91214 6.99186 7.06794 7.49267 7.60749 7.77117 7.85593 7.85911 8.01008 8.24067 8.39963 8.87585 9.49599 10.97300 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017500 B = 0.002786 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.632645 B =10049.247449 C =11321.527001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.484 5.484 3 C 0.020 3.980 4 C 0.327 3.673 5 N -0.535 5.535 6 C 0.291 3.709 7 N -0.513 5.513 8 C 0.148 3.852 9 C 0.044 3.956 10 N -0.629 5.629 11 C 0.512 3.488 12 O -0.493 6.493 13 C 0.498 3.502 14 O -0.517 6.517 15 N -0.561 5.561 16 C 0.049 3.951 17 C -0.128 4.128 18 C -0.114 4.114 19 C 0.041 3.959 20 H 0.030 0.970 21 C -0.519 4.519 22 H 0.060 0.940 23 C 0.062 3.938 24 N -0.883 5.883 25 Si 0.894 3.106 26 H -0.280 1.280 27 H -0.286 1.286 28 H -0.274 1.274 29 C 0.108 3.892 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.043 0.957 36 H 0.198 0.802 37 H 0.192 0.808 38 H 0.431 0.569 39 H 0.141 0.859 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.050 0.950 44 H 0.052 0.948 45 H 0.264 0.736 46 H 0.051 0.949 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.652 -7.012 9.323 19.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.203 5.203 3 C -0.126 4.126 4 C 0.084 3.916 5 N -0.254 5.254 6 C 0.002 3.998 7 N -0.229 5.229 8 C -0.018 4.018 9 C -0.059 4.059 10 N -0.276 5.276 11 C 0.297 3.703 12 O -0.369 6.369 13 C 0.278 3.722 14 O -0.394 6.394 15 N -0.293 5.293 16 C -0.072 4.072 17 C -0.166 4.166 18 C -0.152 4.152 19 C 0.022 3.978 20 H 0.048 0.952 21 C -0.557 4.557 22 H 0.078 0.922 23 C -0.140 4.140 24 N -0.521 5.521 25 Si 0.722 3.278 26 H -0.206 1.206 27 H -0.212 1.212 28 H -0.199 1.199 29 C -0.012 4.012 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.110 0.890 35 H 0.062 0.938 36 H 0.214 0.786 37 H 0.208 0.792 38 H 0.272 0.728 39 H 0.157 0.843 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.074 0.926 46 H 0.069 0.931 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -16.094 -7.377 9.523 20.103 hybrid contribution 0.894 0.997 -1.177 1.783 sum -15.200 -6.380 8.346 18.477 Atomic orbital electron populations 1.22304 0.83543 1.03636 1.01662 1.59109 1.11625 1.14623 1.34905 1.22638 1.02285 0.85309 1.02394 1.19877 0.88406 0.94587 0.88738 1.68396 1.39234 1.15302 1.02513 1.24754 0.90670 0.91036 0.93387 1.68516 1.03442 1.21991 1.28911 1.23715 1.01504 0.89104 0.87479 1.19171 0.89669 1.02079 0.95020 1.43286 1.06313 1.63257 1.14760 1.21238 0.83001 0.76368 0.89665 1.90291 1.75834 1.48725 1.22082 1.19384 0.83863 0.81612 0.87332 1.90802 1.78002 1.48281 1.22320 1.48480 1.04517 1.58379 1.17896 1.22997 1.01947 0.96604 0.85693 1.21785 0.97927 0.98574 0.98316 1.21672 0.96695 1.00010 0.96793 1.18979 0.94224 0.93194 0.91421 0.95220 1.21090 0.92608 1.41316 1.00734 0.92187 1.25056 0.95478 0.95263 0.98246 1.69859 1.15558 1.44064 1.22587 0.86555 0.81943 0.78275 0.81032 1.20592 1.21176 1.19898 1.22578 0.89934 0.96711 0.91931 0.93151 0.90583 0.90494 0.90027 0.88988 0.93781 0.78577 0.79152 0.72789 0.84298 0.92324 0.92055 0.92324 0.93141 0.92968 0.92588 0.93073 0.85747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 8.79 60.06 0.53 0.81 16 2 N -0.48 -4.85 4.63 -188.57 -0.87 -5.72 16 3 C 0.02 0.18 9.14 60.06 0.55 0.73 16 4 C 0.33 3.78 6.24 -154.52 -0.96 2.82 16 5 N -0.54 -5.91 8.91 -13.64 -0.12 -6.03 16 6 C 0.29 2.98 12.28 -92.17 -1.13 1.85 16 7 N -0.51 -6.16 10.43 -14.50 -0.15 -6.31 16 8 C 0.15 1.86 10.01 -17.06 -0.17 1.69 16 9 C 0.04 0.54 6.30 -83.21 -0.52 0.02 16 10 N -0.63 -8.05 4.02 -9.97 -0.04 -8.09 16 11 C 0.51 7.67 7.61 -11.64 -0.09 7.58 16 12 O -0.49 -7.38 10.22 5.47 0.06 -7.33 16 13 C 0.50 9.25 7.74 -11.64 -0.09 9.16 16 14 O -0.52 -10.92 15.94 5.48 0.09 -10.83 16 15 N -0.56 -10.90 2.98 -173.59 -0.52 -11.42 16 16 C 0.05 0.81 6.24 -3.94 -0.02 0.78 16 17 C -0.13 -2.14 6.06 -26.83 -0.16 -2.30 16 18 C -0.11 -2.25 5.11 -26.69 -0.14 -2.38 16 19 C 0.04 0.98 2.25 -91.65 -0.21 0.77 16 20 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 21 C -0.52 -13.64 8.57 -34.44 -0.29 -13.93 16 22 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 23 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 24 N -0.88 -24.66 11.39 55.43 0.63 -24.03 16 25 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 28 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 29 C 0.11 2.49 5.38 -3.71 -0.02 2.47 16 30 H 0.05 0.41 7.83 -51.93 -0.41 0.01 16 31 H 0.08 0.48 8.06 -51.93 -0.42 0.06 16 32 H 0.08 0.64 8.10 -51.92 -0.42 0.22 16 33 H 0.08 0.86 5.91 -51.93 -0.31 0.55 16 34 H 0.09 0.67 8.03 -51.93 -0.42 0.25 16 35 H 0.04 0.40 8.11 -51.93 -0.42 -0.02 16 36 H 0.20 1.30 8.06 -52.49 -0.42 0.87 16 37 H 0.19 2.41 5.75 -52.49 -0.30 2.11 16 38 H 0.43 5.36 6.90 -40.82 -0.28 5.08 16 39 H 0.14 2.14 3.77 -56.79 -0.21 1.93 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 46 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 47 H 0.12 3.31 5.16 -51.93 -0.27 3.04 16 LS Contribution 375.13 15.07 5.65 5.65 Total: -1.00 -29.62 375.13 -9.51 -39.13 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -6.38 Total: 7.67 kcal Atomic # 6 Polarization: 14.47 SS G_CDS: -2.83 Total: 11.64 kcal Atomic # 7 Polarization: -60.54 SS G_CDS: -1.07 Total: -61.61 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: 0.14 Total: -18.16 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.62 -9.51 -39.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595086621.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.501 kcal (2) G-P(sol) polarization free energy of solvation -29.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds