Wall clock time and date at job start Wed Apr 1 2020 05:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46896 * 110.99885 * 2 1 4 4 C 1.38677 * 111.00065 * 123.94716 * 2 1 3 5 5 N 1.32857 * 120.56841 * 351.54715 * 4 2 1 6 6 C 1.31818 * 120.76798 * 180.02562 * 5 4 2 7 7 N 1.31757 * 121.99330 * 0.02562 * 6 5 4 8 8 C 1.32520 * 121.08153 * 359.97438 * 7 6 5 9 9 C 1.38763 * 119.10085 * 0.02562 * 8 7 6 10 10 N 1.39921 * 120.90149 * 180.02562 * 9 8 7 11 11 C 1.34778 * 120.00083 * 337.29825 * 10 9 8 12 12 O 1.21386 * 120.00007 * 354.73989 * 11 10 9 13 13 C 1.49327 * 120.00042 * 174.74310 * 11 10 9 14 14 O 1.21368 * 120.00248 * 7.39109 * 13 11 10 15 15 N 1.34782 * 119.99885 * 187.39762 * 13 11 10 16 16 C 1.46918 * 120.63204 * 6.19819 * 15 13 11 17 17 C 1.52761 * 109.00944 * 233.58616 * 16 15 13 18 18 C 1.53038 * 109.38054 * 305.58494 * 17 16 15 19 19 C 1.53039 * 109.53686 * 61.24270 * 18 17 16 20 20 H 1.08992 * 109.50315 * 58.58564 * 19 18 17 21 21 C 1.50707 * 109.52404 * 178.66872 * 19 18 17 22 22 H 1.08002 * 119.99714 * 359.84476 * 21 19 18 23 23 C 1.37871 * 119.99991 * 179.85533 * 21 19 18 24 24 N 1.31522 * 120.00058 * 359.97438 * 23 21 19 25 25 Si 1.86802 * 119.99946 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.46897 * 90.00028 * 25 23 21 27 27 H 1.48499 * 109.46963 * 209.99375 * 25 23 21 28 28 H 1.48491 * 109.47140 * 330.00108 * 25 23 21 29 29 C 1.46925 * 120.63002 * 186.47840 * 15 13 11 30 30 H 1.08998 * 109.47362 * 296.04816 * 1 2 3 31 31 H 1.09000 * 109.46901 * 56.05234 * 1 2 3 32 32 H 1.09008 * 109.46826 * 176.05133 * 1 2 3 33 33 H 1.09000 * 109.47321 * 189.19043 * 3 2 1 34 34 H 1.09004 * 109.47091 * 309.18388 * 3 2 1 35 35 H 1.08998 * 109.47586 * 69.18573 * 3 2 1 36 36 H 1.07999 * 119.00275 * 179.71247 * 6 5 4 37 37 H 1.08000 * 120.45184 * 180.02562 * 8 7 6 38 38 H 0.97002 * 120.00178 * 157.30077 * 10 9 8 39 39 H 1.09008 * 109.58603 * 353.41584 * 16 15 13 40 40 H 1.08997 * 109.59218 * 113.84179 * 16 15 13 41 41 H 1.09002 * 109.56570 * 185.54663 * 17 16 15 42 42 H 1.09000 * 109.36114 * 65.49604 * 17 16 15 43 43 H 1.08995 * 109.46160 * 301.22149 * 18 17 16 44 44 H 1.08998 * 109.44928 * 181.25170 * 18 17 16 45 45 H 0.96999 * 119.99944 * 180.02562 * 24 23 21 46 46 H 1.09006 * 109.58618 * 246.15545 * 29 15 13 47 47 H 1.09001 * 109.58779 * 6.57568 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9660 -0.7230 1.0740 5 7 1.1518 -1.1622 2.0275 6 6 1.6200 -1.8493 3.0504 7 7 2.9014 -2.1296 3.1751 8 6 3.7808 -1.7289 2.2684 9 6 3.3370 -1.0022 1.1728 10 7 4.2326 -0.5608 0.1926 11 6 5.5398 -0.4192 0.4889 12 8 5.9250 -0.5819 1.6284 13 6 6.5143 -0.0620 -0.5847 14 8 6.1157 0.2320 -1.6928 15 7 7.8365 -0.0661 -0.3233 16 6 8.3426 -0.5488 0.9687 17 6 9.2341 0.5265 1.5871 18 6 10.3272 0.9155 0.5892 19 6 9.6847 1.4875 -0.6765 20 1 9.0774 2.3544 -0.4165 21 6 10.7622 1.9007 -1.6458 22 1 11.8021 1.7711 -1.3846 23 6 10.4204 2.4444 -2.8658 24 7 9.1540 2.6019 -3.1840 25 14 11.7560 2.9573 -4.0669 26 1 12.0928 1.8126 -4.9510 27 1 11.2709 4.0932 -4.8912 28 1 12.9660 3.3735 -3.3135 29 6 8.7987 0.4178 -1.3227 30 1 -0.3634 0.4513 0.9232 31 1 -0.3633 0.5739 -0.8525 32 1 -0.3633 -1.0253 -0.0708 33 1 3.0727 1.3471 -0.1641 34 1 1.5194 1.9433 -0.7966 35 1 1.7847 1.8415 0.9605 36 1 0.9332 -2.1885 3.8117 37 1 4.8287 -1.9648 2.3806 38 1 3.9128 -0.3567 -0.7001 39 1 7.5051 -0.7549 1.6353 40 1 8.9237 -1.4584 0.8168 41 1 9.6931 0.1410 2.4975 42 1 8.6310 1.4025 1.8259 43 1 10.9144 0.0341 0.3318 44 1 10.9774 1.6667 1.0376 45 1 8.9136 2.9841 -4.0425 46 1 9.4178 -0.4113 -1.6653 47 1 8.2620 0.8493 -2.1676 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595086621.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:51:42 Heat of formation + Delta-G solvation = 6.794622 kcal Electronic energy + Delta-G solvation = -31346.208594 eV Core-core repulsion = 27144.116107 eV Total energy + Delta-G solvation = -4202.092487 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -42.93624 -41.80634 -39.98745 -38.79316 -38.57369 -36.68458 -35.17527 -34.00018 -33.49647 -31.65358 -31.53018 -28.91968 -27.86050 -26.91188 -26.80600 -25.62279 -23.81836 -23.50206 -23.40235 -21.83404 -20.69277 -19.46350 -18.84997 -18.69533 -18.48713 -17.95670 -17.50744 -17.04049 -16.75181 -16.51436 -16.32777 -15.99951 -15.67301 -15.56619 -15.39424 -15.08528 -14.94464 -14.75236 -14.49696 -14.41317 -13.86056 -13.53488 -13.41925 -13.28278 -13.12168 -12.88008 -12.81327 -12.57503 -12.47166 -12.44851 -12.30078 -12.17775 -11.95629 -11.71364 -11.64696 -11.16333 -10.98723 -10.58414 -10.54510 -10.32376 -10.03557 -9.59873 -9.34180 -8.12255 -6.27924 -0.49916 -0.12601 0.35608 1.02744 1.42423 1.43493 1.53514 1.96477 2.19292 2.32962 2.43357 2.67697 3.04930 3.08263 3.17484 3.22682 3.53921 3.75022 4.04893 4.16752 4.18189 4.19213 4.30533 4.40192 4.45375 4.59544 4.62316 4.69061 4.74351 4.75852 4.81985 4.97266 5.05599 5.07140 5.18378 5.19410 5.24080 5.31604 5.36451 5.44904 5.56633 5.66793 5.78049 5.85528 5.91572 5.94263 6.26381 6.35647 6.48486 6.79781 6.87629 6.99060 7.41869 8.91698 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017500 B = 0.002786 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.632645 B =10049.247449 C =11321.527001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.490 5.490 3 C 0.022 3.978 4 C 0.331 3.669 5 N -0.539 5.539 6 C 0.298 3.702 7 N -0.527 5.527 8 C 0.146 3.854 9 C 0.024 3.976 10 N -0.613 5.613 11 C 0.526 3.474 12 O -0.492 6.492 13 C 0.493 3.507 14 O -0.550 6.550 15 N -0.568 5.568 16 C 0.048 3.952 17 C -0.121 4.121 18 C -0.108 4.108 19 C 0.039 3.961 20 H -0.009 1.009 21 C -0.535 4.535 22 H 0.062 0.938 23 C 0.013 3.987 24 N -0.913 5.913 25 Si 0.957 3.043 26 H -0.275 1.275 27 H -0.287 1.287 28 H -0.266 1.266 29 C 0.122 3.878 30 H 0.050 0.950 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.112 0.888 35 H 0.044 0.956 36 H 0.234 0.766 37 H 0.189 0.811 38 H 0.433 0.567 39 H 0.156 0.844 40 H 0.075 0.925 41 H 0.099 0.901 42 H 0.047 0.953 43 H 0.058 0.942 44 H 0.052 0.948 45 H 0.262 0.738 46 H 0.047 0.953 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.421 -7.897 10.752 21.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.209 5.209 3 C -0.124 4.124 4 C 0.087 3.913 5 N -0.258 5.258 6 C 0.009 3.991 7 N -0.243 5.243 8 C -0.020 4.020 9 C -0.078 4.078 10 N -0.260 5.260 11 C 0.310 3.690 12 O -0.368 6.368 13 C 0.275 3.725 14 O -0.429 6.429 15 N -0.299 5.299 16 C -0.072 4.072 17 C -0.159 4.159 18 C -0.146 4.146 19 C 0.020 3.980 20 H 0.009 0.991 21 C -0.573 4.573 22 H 0.080 0.920 23 C -0.186 4.186 24 N -0.552 5.552 25 Si 0.782 3.218 26 H -0.200 1.200 27 H -0.212 1.212 28 H -0.190 1.190 29 C 0.000 4.000 30 H 0.069 0.931 31 H 0.114 0.886 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.131 0.869 35 H 0.063 0.937 36 H 0.250 0.750 37 H 0.205 0.795 38 H 0.274 0.726 39 H 0.172 0.828 40 H 0.094 0.906 41 H 0.117 0.883 42 H 0.065 0.935 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.065 0.935 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -16.886 -8.277 10.987 21.779 hybrid contribution 1.004 1.261 -1.588 2.262 sum -15.882 -7.016 9.399 19.744 Atomic orbital electron populations 1.22370 0.82124 1.03871 1.02564 1.59127 1.12856 1.14811 1.34090 1.22649 1.01436 0.85071 1.03221 1.20079 0.88101 0.94173 0.88951 1.68525 1.38916 1.15730 1.02661 1.25523 0.90639 0.89439 0.93513 1.68574 1.04117 1.22659 1.28926 1.23707 1.01690 0.88982 0.87583 1.19197 0.89929 1.03495 0.95215 1.43022 1.05450 1.62489 1.15060 1.20271 0.83201 0.77077 0.88476 1.90270 1.75938 1.49231 1.21404 1.19946 0.84140 0.80615 0.87827 1.90777 1.78611 1.49458 1.24023 1.48453 1.04595 1.58541 1.18354 1.23252 1.02742 0.96940 0.84253 1.21753 0.96895 0.98393 0.98845 1.21570 0.97482 1.00030 0.95488 1.18908 0.93597 0.92285 0.93184 0.99103 1.21477 0.93274 1.41209 1.01379 0.92026 1.25835 0.97367 0.95417 1.00024 1.70029 1.17394 1.44906 1.22827 0.85571 0.79504 0.77835 0.78854 1.20033 1.21239 1.19042 1.22008 0.90048 0.96141 0.91770 0.93147 0.88602 0.90761 0.91700 0.86937 0.93720 0.75049 0.79481 0.72604 0.82788 0.90626 0.88290 0.93462 0.92358 0.92918 0.92918 0.93479 0.89498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 8.79 127.69 1.12 1.64 16 2 N -0.49 -9.14 4.63 -750.52 -3.48 -12.61 16 3 C 0.02 0.38 9.14 127.69 1.17 1.55 16 4 C 0.33 7.17 6.24 133.31 0.83 8.00 16 5 N -0.54 -10.78 8.91 -197.06 -1.76 -12.53 16 6 C 0.30 5.37 12.28 180.89 2.22 7.59 16 7 N -0.53 -11.67 10.43 -199.80 -2.08 -13.76 16 8 C 0.15 3.49 10.01 84.71 0.85 4.34 16 9 C 0.02 0.57 6.30 38.47 0.24 0.81 16 10 N -0.61 -15.57 4.02 -303.80 -1.22 -16.79 16 11 C 0.53 15.66 7.61 87.23 0.66 16.32 16 12 O -0.49 -14.22 10.22 -3.36 -0.03 -14.25 16 13 C 0.49 18.76 7.74 87.23 0.68 19.43 16 14 O -0.55 -24.24 15.94 -3.30 -0.05 -24.29 16 15 N -0.57 -22.39 2.98 -821.45 -2.45 -24.84 16 16 C 0.05 1.51 6.24 86.22 0.54 2.05 16 17 C -0.12 -3.85 6.06 30.53 0.19 -3.66 16 18 C -0.11 -4.20 5.11 30.62 0.16 -4.04 16 19 C 0.04 1.94 2.25 -11.46 -0.03 1.92 16 20 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 21 C -0.53 -28.70 8.57 25.60 0.22 -28.48 16 22 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 23 C 0.01 0.72 5.30 84.65 0.45 1.17 16 24 N -0.91 -52.98 11.39 21.45 0.24 -52.73 16 25 Si 0.96 43.05 29.54 68.60 2.03 45.07 16 26 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 27 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 28 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 29 C 0.12 5.83 5.38 86.36 0.46 6.29 16 30 H 0.05 0.72 7.83 -2.39 -0.02 0.70 16 31 H 0.10 0.97 8.06 -2.39 -0.02 0.95 16 32 H 0.07 1.09 8.10 -2.38 -0.02 1.08 16 33 H 0.06 1.35 5.91 -2.39 -0.01 1.33 16 34 H 0.11 1.45 8.03 -2.38 -0.02 1.43 16 35 H 0.04 0.76 8.11 -2.39 -0.02 0.74 16 36 H 0.23 2.27 8.06 -2.91 -0.02 2.24 16 37 H 0.19 4.52 5.75 -2.91 -0.02 4.51 16 38 H 0.43 10.83 6.90 -92.71 -0.64 10.19 16 39 H 0.16 4.47 3.77 -79.42 -0.30 4.17 16 40 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 42 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 46 H 0.05 2.23 8.14 -2.38 -0.02 2.21 16 47 H 0.09 4.87 5.16 -2.39 -0.01 4.86 16 Total: -1.00 -65.96 375.13 1.05 -64.91 By element: Atomic # 1 Polarization: 26.80 SS G_CDS: 0.09 Total: 26.89 kcal Atomic # 6 Polarization: 25.18 SS G_CDS: 9.76 Total: 34.94 kcal Atomic # 7 Polarization: -122.53 SS G_CDS: -10.74 Total: -133.27 kcal Atomic # 8 Polarization: -38.45 SS G_CDS: -0.09 Total: -38.54 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Total: -65.96 1.05 -64.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595086621.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.702 kcal (2) G-P(sol) polarization free energy of solvation -65.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds