Wall clock time and date at job start Wed Apr 1 2020 05:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.37602 * 119.59790 * 2 1 4 4 N 1.35905 * 134.42501 * 0.62550 * 3 2 1 5 5 H 0.97004 * 126.20843 * 359.28746 * 4 3 2 6 6 C 1.36460 * 107.58425 * 179.53777 * 4 3 2 7 7 C 1.50694 * 125.22744 * 179.82044 * 6 4 3 8 8 N 1.46908 * 109.46880 * 94.98828 * 7 6 4 9 9 C 1.46844 * 111.00037 * 66.04212 * 8 7 6 10 10 C 1.53041 * 109.52542 * 185.83894 * 9 8 7 11 11 C 1.53119 * 109.27750 * 300.82320 * 10 9 8 12 12 C 1.53121 * 109.15929 * 57.65475 * 11 10 9 13 13 H 1.09001 * 109.50793 * 62.32636 * 12 11 10 14 14 C 1.50700 * 109.50192 * 182.40380 * 12 11 10 15 15 H 1.08000 * 120.00262 * 119.99703 * 14 12 11 16 16 C 1.37875 * 120.00200 * 299.99804 * 14 12 11 17 17 N 1.31519 * 119.99883 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 120.00450 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.47042 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47041 * 119.99643 * 18 16 14 21 21 H 1.48502 * 109.47001 * 240.00208 * 18 16 14 22 22 C 1.46842 * 110.99850 * 190.25556 * 8 7 6 23 23 N 1.30172 * 109.54109 * 359.79172 * 6 4 3 24 24 C 1.35464 * 109.08840 * 359.97438 * 23 6 4 25 25 C 1.46375 * 134.30283 * 179.97438 * 24 23 6 26 26 O 1.21738 * 120.75306 * 359.97438 * 25 24 23 27 27 N 1.35065 * 118.49333 * 179.97438 * 25 24 23 28 28 C 1.46504 * 119.53797 * 180.02562 * 27 25 24 29 29 C 1.34340 * 120.92078 * 359.97438 * 27 25 24 30 30 O 1.21601 * 118.84818 * 180.02562 * 29 27 25 31 31 H 1.09001 * 109.47060 * 179.73000 * 1 2 3 32 32 H 1.09004 * 109.47073 * 299.72488 * 1 2 3 33 33 H 1.09000 * 109.47212 * 59.72571 * 1 2 3 34 34 H 1.09001 * 109.47376 * 214.98412 * 7 6 4 35 35 H 1.08997 * 109.47835 * 334.99079 * 7 6 4 36 36 H 1.08998 * 109.46331 * 305.86002 * 9 8 7 37 37 H 1.09005 * 109.46033 * 65.82399 * 9 8 7 38 38 H 1.09001 * 109.49953 * 60.76296 * 10 9 8 39 39 H 1.09003 * 109.50388 * 180.87828 * 10 9 8 40 40 H 1.08998 * 109.52212 * 177.55374 * 11 10 9 41 41 H 1.08997 * 109.52141 * 297.68232 * 11 10 9 42 42 H 0.96998 * 120.00186 * 180.02562 * 17 16 14 43 43 H 1.09001 * 109.46237 * 294.16882 * 22 8 7 44 44 H 1.08998 * 109.46796 * 54.14440 * 22 8 7 45 45 H 1.08999 * 109.47039 * 269.97534 * 28 27 25 46 46 H 1.08996 * 109.47215 * 29.98407 * 28 27 25 47 47 H 1.09007 * 109.46945 * 149.98359 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1447 1.1965 0.0000 4 7 1.7707 2.5030 0.0106 5 1 0.8605 2.8385 0.0113 6 6 2.9078 3.2573 0.0144 7 6 2.9517 4.7636 0.0219 8 7 3.0863 5.2426 1.4041 9 6 4.3829 4.8524 1.9724 10 6 4.4299 5.2390 3.4524 11 6 4.2269 6.7507 3.5867 12 6 2.8918 7.1375 2.9443 13 1 2.0766 6.6453 3.4747 14 6 2.7114 8.6317 3.0197 15 1 2.6024 9.2090 2.1134 16 6 2.6855 9.2620 4.2457 17 7 2.8188 8.5593 5.3493 18 14 2.4626 11.1143 4.3392 19 1 2.3380 11.6678 2.9668 20 1 1.2341 11.4266 5.1128 21 1 3.6391 11.7211 5.0122 22 6 2.8894 6.6959 1.4790 23 7 3.9488 2.4758 0.0111 24 6 3.5344 1.1861 0.0056 25 6 4.2190 -0.1077 -0.0003 26 8 5.4349 -0.1686 -0.0016 27 7 3.4712 -1.2324 -0.0044 28 6 4.1327 -2.5396 -0.0098 29 6 2.1293 -1.1691 -0.0025 30 8 1.4930 -2.2054 -0.0058 31 1 -0.3633 -1.0277 -0.0048 32 1 -0.3633 0.5096 0.8925 33 1 -0.3634 0.5181 -0.8875 34 1 3.8039 5.1053 -0.5656 35 1 2.0314 5.1562 -0.4106 36 1 4.5129 3.7747 1.8742 37 1 5.1827 5.3647 1.4376 38 1 3.6389 4.7164 3.9903 39 1 5.3983 4.9633 3.8700 40 1 4.2163 7.0245 4.6417 41 1 5.0397 7.2736 3.0828 42 1 2.8002 9.0026 6.2119 43 1 3.6963 7.1995 0.9466 44 1 1.9347 6.9571 1.0225 45 1 4.2959 -2.8600 -1.0388 46 1 5.0911 -2.4639 0.5037 47 1 3.5029 -3.2676 0.5018 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595621084.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:19 Heat of formation + Delta-G solvation = 23.569961 kcal Electronic energy + Delta-G solvation = -30960.799750 eV Core-core repulsion = 26759.434697 eV Total energy + Delta-G solvation = -4201.365053 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.20372 -41.39153 -39.26191 -38.25453 -36.70686 -35.54298 -33.97137 -33.18430 -31.99752 -30.46389 -29.82278 -28.54706 -27.18435 -26.28087 -24.96859 -23.69632 -23.37882 -22.18164 -21.54733 -21.14801 -19.86335 -18.69631 -18.48195 -18.00923 -17.65632 -16.57331 -16.42779 -15.99695 -15.74684 -15.67416 -15.24890 -14.88532 -14.52221 -14.25485 -14.19679 -14.03091 -13.64479 -13.30838 -13.23479 -13.06420 -12.85639 -12.69367 -12.44718 -12.18313 -11.89364 -11.47986 -11.42974 -11.18365 -10.99658 -10.78913 -10.68832 -10.67932 -10.47951 -10.34366 -10.09871 -10.04748 -9.86129 -9.51347 -9.12520 -8.73672 -8.35274 -8.26285 -7.83487 -6.01172 -4.07901 0.97652 1.19443 1.42298 2.15217 2.32393 2.72660 3.23845 3.27137 3.35746 3.38405 3.69145 4.07709 4.31005 4.42919 4.52678 4.63091 4.68815 4.78598 4.92982 5.03142 5.05837 5.11670 5.28252 5.29187 5.37005 5.43534 5.52594 5.77089 5.81525 5.87873 5.99299 6.10751 6.29609 6.31631 6.50629 6.59594 6.71557 6.75582 6.88606 6.91622 7.16344 7.18237 7.32644 7.38643 7.54565 7.64829 7.70737 7.73805 8.02579 8.14210 8.42727 8.96377 9.56863 11.04629 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022042 B = 0.002318 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.000641 B =12078.400084 C =12537.059248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.516 5.516 3 C 0.265 3.735 4 N -0.543 5.543 5 H 0.430 0.570 6 C 0.259 3.741 7 C 0.133 3.867 8 N -0.537 5.537 9 C 0.059 3.941 10 C -0.116 4.116 11 C -0.112 4.112 12 C 0.056 3.944 13 H 0.033 0.967 14 C -0.515 4.515 15 H 0.055 0.945 16 C 0.063 3.937 17 N -0.887 5.887 18 Si 0.890 3.110 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.285 1.285 22 C 0.068 3.932 23 N -0.404 5.404 24 C -0.092 4.092 25 C 0.596 3.404 26 O -0.483 6.483 27 N -0.556 5.556 28 C 0.084 3.916 29 C 0.717 3.283 30 O -0.540 6.540 31 H 0.111 0.889 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.029 0.971 38 H 0.057 0.943 39 H 0.047 0.953 40 H 0.090 0.910 41 H 0.031 0.969 42 H 0.259 0.741 43 H 0.026 0.974 44 H 0.061 0.939 45 H 0.075 0.925 46 H 0.095 0.905 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.866 -18.061 -12.485 22.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.244 5.244 3 C 0.045 3.955 4 N -0.153 5.153 5 H 0.270 0.730 6 C -0.007 4.007 7 C 0.003 3.997 8 N -0.263 5.263 9 C -0.069 4.069 10 C -0.154 4.154 11 C -0.150 4.150 12 C 0.038 3.962 13 H 0.052 0.948 14 C -0.554 4.554 15 H 0.073 0.927 16 C -0.138 4.138 17 N -0.526 5.526 18 Si 0.718 3.282 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.058 4.058 23 N -0.121 5.121 24 C -0.224 4.224 25 C 0.387 3.613 26 O -0.354 6.354 27 N -0.301 5.301 28 C -0.056 4.056 29 C 0.420 3.580 30 O -0.413 6.413 31 H 0.130 0.870 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.112 0.888 36 H 0.089 0.911 37 H 0.047 0.953 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.109 0.891 41 H 0.050 0.950 42 H 0.069 0.931 43 H 0.044 0.956 44 H 0.079 0.921 45 H 0.094 0.906 46 H 0.114 0.886 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.004 -18.728 -12.015 22.608 hybrid contribution -0.974 1.404 -0.300 1.735 sum -4.978 -17.323 -12.315 21.830 Atomic orbital electron populations 1.22159 0.75122 1.06933 1.03133 1.43579 1.08599 1.00978 1.71283 1.18053 0.91899 0.81307 1.04289 1.42565 1.11823 1.02585 1.58294 0.72998 1.23560 0.78254 0.95482 1.03395 1.20507 1.03255 0.82663 0.93284 1.62064 1.33429 1.16276 1.14487 1.22149 0.88345 1.00044 0.96318 1.21669 0.99928 0.99809 0.94014 1.21670 0.98274 0.90633 1.04411 1.18660 0.94377 0.95014 0.88190 0.94849 1.21160 1.49752 0.92142 0.92340 0.92724 1.24937 0.95131 0.97955 0.95825 1.69902 1.50169 1.35047 0.97464 0.86577 0.77678 0.85919 0.78031 1.19849 1.21093 1.21079 1.22364 0.99058 0.82664 1.01713 1.70232 1.27973 0.97986 1.15924 1.20133 0.87391 0.93324 1.21531 1.16921 0.86518 0.81932 0.75913 1.90880 1.12216 1.86442 1.45841 1.45898 1.05572 1.10212 1.68370 1.21959 0.98957 0.80584 1.04143 1.15208 0.81711 0.82840 0.78286 1.91013 1.65245 1.29806 1.55279 0.87001 0.90255 0.90495 0.90996 0.88788 0.91105 0.95263 0.92458 0.93385 0.89132 0.94989 0.93077 0.95618 0.92059 0.90635 0.88628 0.88695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.38 10.58 59.85 0.63 1.02 16 2 N -0.52 -4.89 3.03 -127.99 -0.39 -5.27 16 3 C 0.26 2.89 7.74 -153.34 -1.19 1.70 16 4 N -0.54 -5.14 6.14 -9.06 -0.06 -5.19 16 5 H 0.43 2.54 8.96 -40.82 -0.37 2.17 16 6 C 0.26 3.25 6.91 -154.38 -1.07 2.19 16 7 C 0.13 1.66 5.59 -4.97 -0.03 1.63 16 8 N -0.54 -8.85 4.65 -236.11 -1.10 -9.95 16 9 C 0.06 1.05 5.30 -3.83 -0.02 1.03 16 10 C -0.12 -2.29 6.09 -26.65 -0.16 -2.45 16 11 C -0.11 -2.58 5.02 -26.61 -0.13 -2.71 16 12 C 0.06 1.33 2.27 -91.69 -0.21 1.12 16 13 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 14 C -0.52 -13.45 8.56 -34.44 -0.29 -13.75 16 15 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 16 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 17 N -0.89 -24.70 11.35 55.43 0.63 -24.07 16 18 Si 0.89 20.64 29.54 -169.99 -5.02 15.61 16 19 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 C 0.07 1.30 4.68 -3.83 -0.02 1.28 16 23 N -0.40 -6.16 10.08 -6.83 -0.07 -6.23 16 24 C -0.09 -1.31 7.42 -82.72 -0.61 -1.92 16 25 C 0.60 8.45 7.63 -12.86 -0.10 8.35 16 26 O -0.48 -8.08 16.75 5.15 0.09 -7.99 16 27 N -0.56 -6.36 2.96 -129.84 -0.38 -6.74 16 28 C 0.08 0.71 10.09 59.85 0.60 1.31 16 29 C 0.72 7.96 8.10 -87.59 -0.71 7.25 16 30 O -0.54 -6.52 14.91 5.28 0.08 -6.44 16 31 H 0.11 0.66 6.80 -51.93 -0.35 0.31 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.07 0.90 8.12 -51.93 -0.42 0.48 16 35 H 0.09 0.91 7.98 -51.93 -0.41 0.49 16 36 H 0.07 1.26 6.21 -51.93 -0.32 0.94 16 37 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.09 2.36 6.15 -51.93 -0.32 2.04 16 41 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 43 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.06 1.09 8.01 -51.93 -0.42 0.67 16 45 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.10 0.78 7.42 -51.93 -0.39 0.40 16 47 H 0.09 0.70 7.33 -51.93 -0.38 0.32 16 LS Contribution 378.34 15.07 5.70 5.70 Total: -1.00 -33.13 378.34 -10.64 -43.77 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -6.72 Total: -0.84 kcal Atomic # 6 Polarization: 11.03 SS G_CDS: -3.40 Total: 7.63 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: -1.36 Total: -57.45 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: 0.17 Total: -14.43 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.13 -10.64 -43.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595621084.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.343 kcal (2) G-P(sol) polarization free energy of solvation -33.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds