Wall clock time and date at job start Wed Apr 1 2020 05:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.37602 * 119.59790 * 2 1 4 4 N 1.35905 * 134.42501 * 0.62550 * 3 2 1 5 5 H 0.97004 * 126.20843 * 359.28746 * 4 3 2 6 6 C 1.36460 * 107.58425 * 179.53777 * 4 3 2 7 7 C 1.50694 * 125.22744 * 179.82044 * 6 4 3 8 8 N 1.46908 * 109.46880 * 94.98828 * 7 6 4 9 9 C 1.46844 * 111.00037 * 66.04212 * 8 7 6 10 10 C 1.53041 * 109.52542 * 185.83894 * 9 8 7 11 11 C 1.53119 * 109.27750 * 300.82320 * 10 9 8 12 12 C 1.53121 * 109.15929 * 57.65475 * 11 10 9 13 13 H 1.09001 * 109.50793 * 62.32636 * 12 11 10 14 14 C 1.50700 * 109.50192 * 182.40380 * 12 11 10 15 15 H 1.08000 * 120.00262 * 119.99703 * 14 12 11 16 16 C 1.37875 * 120.00200 * 299.99804 * 14 12 11 17 17 N 1.31519 * 119.99883 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 120.00450 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.47042 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47041 * 119.99643 * 18 16 14 21 21 H 1.48502 * 109.47001 * 240.00208 * 18 16 14 22 22 C 1.46842 * 110.99850 * 190.25556 * 8 7 6 23 23 N 1.30172 * 109.54109 * 359.79172 * 6 4 3 24 24 C 1.35464 * 109.08840 * 359.97438 * 23 6 4 25 25 C 1.46375 * 134.30283 * 179.97438 * 24 23 6 26 26 O 1.21738 * 120.75306 * 359.97438 * 25 24 23 27 27 N 1.35065 * 118.49333 * 179.97438 * 25 24 23 28 28 C 1.46504 * 119.53797 * 180.02562 * 27 25 24 29 29 C 1.34340 * 120.92078 * 359.97438 * 27 25 24 30 30 O 1.21601 * 118.84818 * 180.02562 * 29 27 25 31 31 H 1.09001 * 109.47060 * 179.73000 * 1 2 3 32 32 H 1.09004 * 109.47073 * 299.72488 * 1 2 3 33 33 H 1.09000 * 109.47212 * 59.72571 * 1 2 3 34 34 H 1.09001 * 109.47376 * 214.98412 * 7 6 4 35 35 H 1.08997 * 109.47835 * 334.99079 * 7 6 4 36 36 H 1.08998 * 109.46331 * 305.86002 * 9 8 7 37 37 H 1.09005 * 109.46033 * 65.82399 * 9 8 7 38 38 H 1.09001 * 109.49953 * 60.76296 * 10 9 8 39 39 H 1.09003 * 109.50388 * 180.87828 * 10 9 8 40 40 H 1.08998 * 109.52212 * 177.55374 * 11 10 9 41 41 H 1.08997 * 109.52141 * 297.68232 * 11 10 9 42 42 H 0.96998 * 120.00186 * 180.02562 * 17 16 14 43 43 H 1.09001 * 109.46237 * 294.16882 * 22 8 7 44 44 H 1.08998 * 109.46796 * 54.14440 * 22 8 7 45 45 H 1.08999 * 109.47039 * 269.97534 * 28 27 25 46 46 H 1.08996 * 109.47215 * 29.98407 * 28 27 25 47 47 H 1.09007 * 109.46945 * 149.98359 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1447 1.1965 0.0000 4 7 1.7707 2.5030 0.0106 5 1 0.8605 2.8385 0.0113 6 6 2.9078 3.2573 0.0144 7 6 2.9517 4.7636 0.0219 8 7 3.0863 5.2426 1.4041 9 6 4.3829 4.8524 1.9724 10 6 4.4299 5.2390 3.4524 11 6 4.2269 6.7507 3.5867 12 6 2.8918 7.1375 2.9443 13 1 2.0766 6.6453 3.4747 14 6 2.7114 8.6317 3.0197 15 1 2.6024 9.2090 2.1134 16 6 2.6855 9.2620 4.2457 17 7 2.8188 8.5593 5.3493 18 14 2.4626 11.1143 4.3392 19 1 2.3380 11.6678 2.9668 20 1 1.2341 11.4266 5.1128 21 1 3.6391 11.7211 5.0122 22 6 2.8894 6.6959 1.4790 23 7 3.9488 2.4758 0.0111 24 6 3.5344 1.1861 0.0056 25 6 4.2190 -0.1077 -0.0003 26 8 5.4349 -0.1686 -0.0016 27 7 3.4712 -1.2324 -0.0044 28 6 4.1327 -2.5396 -0.0098 29 6 2.1293 -1.1691 -0.0025 30 8 1.4930 -2.2054 -0.0058 31 1 -0.3633 -1.0277 -0.0048 32 1 -0.3633 0.5096 0.8925 33 1 -0.3634 0.5181 -0.8875 34 1 3.8039 5.1053 -0.5656 35 1 2.0314 5.1562 -0.4106 36 1 4.5129 3.7747 1.8742 37 1 5.1827 5.3647 1.4376 38 1 3.6389 4.7164 3.9903 39 1 5.3983 4.9633 3.8700 40 1 4.2163 7.0245 4.6417 41 1 5.0397 7.2736 3.0828 42 1 2.8002 9.0026 6.2119 43 1 3.6963 7.1995 0.9466 44 1 1.9347 6.9571 1.0225 45 1 4.2959 -2.8600 -1.0388 46 1 5.0911 -2.4639 0.5037 47 1 3.5029 -3.2676 0.5018 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595621084.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:18 Heat of formation + Delta-G solvation = 1.704318 kcal Electronic energy + Delta-G solvation = -30961.747915 eV Core-core repulsion = 26759.434697 eV Total energy + Delta-G solvation = -4202.313219 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -44.11100 -42.30058 -40.24524 -39.72635 -37.58145 -36.49746 -35.64661 -34.12152 -33.65963 -31.74317 -31.17975 -29.50651 -27.87324 -27.36633 -26.86555 -24.61828 -24.38015 -23.56133 -23.09102 -22.13934 -20.81878 -20.34221 -19.45283 -18.86922 -18.54406 -18.37263 -17.36419 -17.00154 -16.91499 -16.60201 -16.50938 -16.08891 -15.80842 -15.62854 -15.40025 -15.03960 -14.93069 -14.46109 -14.39169 -14.13449 -13.96532 -13.69105 -13.53341 -13.42351 -13.35284 -12.86133 -12.78854 -12.53596 -12.44278 -12.38146 -12.03958 -11.80049 -11.72269 -11.67979 -11.39640 -11.37531 -11.30320 -10.96529 -10.84378 -10.61128 -10.34237 -9.31740 -9.08240 -8.03755 -6.17126 0.04806 0.37110 0.45526 1.25987 1.38850 1.43394 1.46470 1.56344 1.94486 2.26316 2.46633 2.78181 3.17180 3.22464 3.24337 3.61424 3.86612 3.98818 4.22416 4.23857 4.24880 4.28605 4.33986 4.41324 4.41632 4.50331 4.62116 4.66131 4.69746 4.73462 4.74815 4.79724 4.94707 4.97614 5.03163 5.11114 5.17264 5.22796 5.39309 5.56526 5.69019 5.74049 5.96921 6.08365 6.13412 6.22093 6.23667 6.29003 6.46609 6.49512 6.76684 6.97161 7.51169 9.00936 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022042 B = 0.002318 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.000641 B =12078.400084 C =12537.059248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.510 5.510 3 C 0.296 3.704 4 N -0.522 5.522 5 H 0.449 0.551 6 C 0.260 3.740 7 C 0.135 3.865 8 N -0.540 5.540 9 C 0.070 3.930 10 C -0.109 4.109 11 C -0.105 4.105 12 C 0.053 3.947 13 H 0.001 0.999 14 C -0.528 4.528 15 H 0.058 0.942 16 C 0.012 3.988 17 N -0.918 5.918 18 Si 0.951 3.049 19 H -0.263 1.263 20 H -0.283 1.283 21 H -0.287 1.287 22 C 0.082 3.918 23 N -0.440 5.440 24 C -0.134 4.134 25 C 0.593 3.407 26 O -0.523 6.523 27 N -0.554 5.554 28 C 0.079 3.921 29 C 0.714 3.286 30 O -0.548 6.548 31 H 0.109 0.891 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.076 0.924 35 H 0.132 0.868 36 H 0.074 0.926 37 H 0.028 0.972 38 H 0.046 0.954 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.023 0.977 42 H 0.258 0.742 43 H 0.024 0.976 44 H 0.080 0.920 45 H 0.090 0.910 46 H 0.093 0.907 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.808 -18.095 -14.261 24.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.238 5.238 3 C 0.073 3.927 4 N -0.134 5.134 5 H 0.294 0.706 6 C -0.007 4.007 7 C 0.006 3.994 8 N -0.266 5.266 9 C -0.058 4.058 10 C -0.147 4.147 11 C -0.143 4.143 12 C 0.034 3.966 13 H 0.019 0.981 14 C -0.567 4.567 15 H 0.076 0.924 16 C -0.187 4.187 17 N -0.558 5.558 18 Si 0.778 3.222 19 H -0.187 1.187 20 H -0.209 1.209 21 H -0.213 1.213 22 C -0.044 4.044 23 N -0.159 5.159 24 C -0.265 4.265 25 C 0.386 3.614 26 O -0.397 6.397 27 N -0.298 5.298 28 C -0.061 4.061 29 C 0.417 3.583 30 O -0.422 6.422 31 H 0.128 0.872 32 H 0.115 0.885 33 H 0.123 0.877 34 H 0.094 0.906 35 H 0.150 0.850 36 H 0.092 0.908 37 H 0.046 0.954 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.042 0.958 42 H 0.067 0.933 43 H 0.043 0.957 44 H 0.098 0.902 45 H 0.108 0.892 46 H 0.112 0.888 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.013 -18.779 -13.813 24.075 hybrid contribution -0.437 1.346 0.256 1.438 sum -6.450 -17.433 -13.557 23.007 Atomic orbital electron populations 1.22520 0.72488 1.07595 1.05408 1.43785 1.10017 0.99902 1.70065 1.17871 0.90956 0.82092 1.01823 1.42371 1.12276 1.01534 1.57198 0.70613 1.23408 0.78647 0.95349 1.03312 1.20622 1.05418 0.82580 0.90754 1.61916 1.32511 1.14684 1.17460 1.21974 0.89180 1.00050 0.94627 1.21563 1.00084 0.97152 0.95924 1.21487 0.97959 0.92902 1.01955 1.18586 0.93099 0.93712 0.91158 0.98129 1.21570 1.48983 0.93695 0.92405 0.92350 1.25713 0.95166 1.02088 0.95698 1.70053 1.51262 1.36618 0.97835 0.85610 0.77312 0.81011 0.78313 1.18731 1.20899 1.21294 1.22043 1.00032 0.84145 0.98222 1.70127 1.29790 0.98911 1.17023 1.20225 0.89041 0.93084 1.24111 1.17108 0.86236 0.82700 0.75339 1.90844 1.13688 1.87027 1.48154 1.45988 1.05862 1.10416 1.67544 1.22166 0.98991 0.79627 1.05307 1.15303 0.81470 0.83262 0.78303 1.91014 1.65260 1.30157 1.55810 0.87202 0.88511 0.87723 0.90568 0.85028 0.90813 0.95364 0.93477 0.92418 0.92660 0.95813 0.93299 0.95736 0.90204 0.89183 0.88794 0.87552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.46 10.58 127.77 1.35 1.81 16 2 N -0.51 -8.38 3.03 -677.27 -2.05 -10.43 16 3 C 0.30 5.77 7.74 132.42 1.02 6.80 16 4 N -0.52 -8.18 6.14 -182.57 -1.12 -9.30 16 5 H 0.45 3.35 8.96 -92.71 -0.83 2.52 16 6 C 0.26 5.89 6.91 137.76 0.95 6.84 16 7 C 0.14 2.97 5.59 85.55 0.48 3.44 16 8 N -0.54 -16.75 4.65 -900.91 -4.19 -20.93 16 9 C 0.07 2.41 5.30 86.33 0.46 2.86 16 10 C -0.11 -4.34 6.09 30.65 0.19 -4.15 16 11 C -0.10 -4.95 5.02 30.67 0.15 -4.79 16 12 C 0.05 2.53 2.27 -11.48 -0.03 2.50 16 13 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 14 C -0.53 -27.54 8.56 25.60 0.22 -27.33 16 15 H 0.06 2.93 7.74 -2.91 -0.02 2.91 16 16 C 0.01 0.63 5.30 84.65 0.45 1.08 16 17 N -0.92 -52.33 11.35 21.45 0.24 -52.08 16 18 Si 0.95 42.36 29.54 68.60 2.03 44.38 16 19 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 20 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 21 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 22 C 0.08 2.99 4.68 86.33 0.40 3.39 16 23 N -0.44 -13.00 10.08 -175.53 -1.77 -14.77 16 24 C -0.13 -3.70 7.42 40.88 0.30 -3.40 16 25 C 0.59 16.90 7.63 86.32 0.66 17.56 16 26 O -0.52 -18.06 16.75 -4.47 -0.07 -18.13 16 27 N -0.55 -12.34 2.96 -801.22 -2.37 -14.71 16 28 C 0.08 1.28 10.09 127.77 1.29 2.57 16 29 C 0.71 14.72 8.10 179.29 1.45 16.17 16 30 O -0.55 -12.24 14.91 -4.04 -0.06 -12.30 16 31 H 0.11 0.98 6.80 -2.39 -0.02 0.97 16 32 H 0.10 0.46 8.14 -2.38 -0.02 0.44 16 33 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 34 H 0.08 1.69 8.12 -2.39 -0.02 1.67 16 35 H 0.13 1.91 7.98 -2.39 -0.02 1.89 16 36 H 0.07 2.56 6.21 -2.39 -0.01 2.55 16 37 H 0.03 0.98 8.14 -2.38 -0.02 0.96 16 38 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.05 2.99 6.15 -2.39 -0.01 2.98 16 41 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 43 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.08 2.60 8.01 -2.39 -0.02 2.58 16 45 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.09 1.56 7.42 -2.39 -0.02 1.54 16 47 H 0.11 1.47 7.33 -2.38 -0.02 1.45 16 Total: -1.00 -74.14 378.34 0.18 -73.97 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: 0.18 Total: 8.95 kcal Atomic # 6 Polarization: 16.00 SS G_CDS: 9.36 Total: 25.36 kcal Atomic # 7 Polarization: -110.98 SS G_CDS: -11.25 Total: -122.23 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -0.14 Total: -30.43 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.38 kcal Total: -74.14 0.18 -73.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595621084.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.670 kcal (2) G-P(sol) polarization free energy of solvation -74.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds