Wall clock time and date at job start Wed Apr 1 2020 05:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37586 * 119.60346 * 2 1 4 4 N 1.35913 * 134.42146 * 359.97438 * 3 2 1 5 5 H 0.96998 * 126.21263 * 359.97438 * 4 3 2 6 6 C 1.36462 * 107.58447 * 179.97438 * 4 3 2 7 7 C 1.50700 * 125.22793 * 180.02562 * 6 4 3 8 8 N 1.46907 * 109.46817 * 95.00689 * 7 6 4 9 9 C 1.46851 * 110.99664 * 294.20682 * 8 7 6 10 10 C 1.53034 * 109.52109 * 174.16277 * 9 8 7 11 11 C 1.53113 * 109.27903 * 59.17763 * 10 9 8 12 12 C 1.53118 * 109.16299 * 302.34308 * 11 10 9 13 13 H 1.08997 * 109.50645 * 297.71436 * 12 11 10 14 14 C 1.50705 * 109.50356 * 177.59543 * 12 11 10 15 15 H 1.08000 * 119.99964 * 275.36675 * 14 12 11 16 16 C 1.37872 * 119.99773 * 95.37299 * 14 12 11 17 17 N 1.31515 * 119.99734 * 185.77329 * 16 14 12 18 18 Si 1.86801 * 120.00181 * 5.76815 * 16 14 12 19 19 H 1.48497 * 109.46940 * 84.78589 * 18 16 14 20 20 H 1.48503 * 109.46912 * 204.78115 * 18 16 14 21 21 H 1.48500 * 109.47107 * 324.78359 * 18 16 14 22 22 C 1.46841 * 110.99796 * 170.00005 * 8 7 6 23 23 N 1.30173 * 109.53860 * 0.02562 * 6 4 3 24 24 C 1.35454 * 109.08989 * 359.97438 * 23 6 4 25 25 C 1.46385 * 134.30693 * 179.97438 * 24 23 6 26 26 O 1.21737 * 120.74953 * 0.04949 * 25 24 23 27 27 N 1.35056 * 118.49874 * 180.02562 * 25 24 23 28 28 C 1.46500 * 119.54483 * 180.02562 * 27 25 24 29 29 C 1.34349 * 120.91849 * 359.70381 * 27 25 24 30 30 O 1.21594 * 118.84770 * 180.27908 * 29 27 25 31 31 H 1.09002 * 109.47218 * 90.00506 * 1 2 3 32 32 H 1.09001 * 109.47634 * 210.00272 * 1 2 3 33 33 H 1.09002 * 109.47440 * 329.99764 * 1 2 3 34 34 H 1.08998 * 109.46915 * 214.99729 * 7 6 4 35 35 H 1.08993 * 109.47450 * 335.00544 * 7 6 4 36 36 H 1.09002 * 109.45776 * 294.17878 * 9 8 7 37 37 H 1.09004 * 109.45989 * 54.14556 * 9 8 7 38 38 H 1.09001 * 109.50248 * 299.23484 * 10 9 8 39 39 H 1.09003 * 109.53638 * 179.14176 * 10 9 8 40 40 H 1.08998 * 109.52081 * 182.43935 * 11 10 9 41 41 H 1.09002 * 109.57788 * 62.28488 * 11 10 9 42 42 H 0.97001 * 120.00060 * 179.97438 * 17 16 14 43 43 H 1.09000 * 109.46152 * 305.84543 * 22 8 7 44 44 H 1.08994 * 109.46875 * 65.82212 * 22 8 7 45 45 H 1.09003 * 109.46962 * 359.97438 * 28 27 25 46 46 H 1.08997 * 109.47785 * 119.99312 * 28 27 25 47 47 H 1.09001 * 109.46811 * 239.99945 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1447 1.1963 0.0000 4 7 1.7706 2.5029 -0.0004 5 1 0.8605 2.8384 -0.0012 6 6 2.9078 3.2573 0.0004 7 6 2.9516 4.7636 0.0009 8 7 3.0859 5.2491 1.3809 9 6 1.8896 4.9290 2.1701 10 6 2.1223 5.3175 3.6319 11 6 2.4251 6.8161 3.7146 12 6 3.6460 7.1308 2.8457 13 1 4.5140 6.5951 3.2300 14 6 3.9154 8.6133 2.8746 15 1 3.3882 9.2712 2.1996 16 6 4.8351 9.1297 3.7625 17 7 4.9883 10.4316 3.8677 18 14 5.8633 7.9800 4.8164 19 1 7.0565 7.5401 4.0496 20 1 6.2990 8.6916 6.0448 21 1 5.0517 6.7946 5.1925 22 6 3.3692 6.6898 1.4066 23 7 3.9487 2.4757 0.0008 24 6 3.5344 1.1860 0.0008 25 6 4.2189 -0.1079 0.0006 26 8 5.4348 -0.1688 0.0014 27 7 3.4711 -1.2325 0.0001 28 6 4.1325 -2.5398 0.0005 29 6 2.1292 -1.1692 0.0057 30 8 1.4930 -2.2054 0.0103 31 1 -0.3634 -0.0001 -1.0277 32 1 -0.3634 -0.8899 0.5139 33 1 -0.3634 0.8900 0.5139 34 1 3.8040 5.1024 -0.5880 35 1 2.0315 5.1541 -0.4337 36 1 1.0369 5.4834 1.7781 37 1 1.6879 3.8597 2.1061 38 1 2.9663 4.7532 4.0285 39 1 1.2289 5.0940 4.2151 40 1 2.6341 7.0889 4.7490 41 1 1.5662 7.3827 3.3549 42 1 5.6351 10.7950 4.4927 43 1 4.2420 6.8994 0.7883 44 1 2.5096 7.2360 1.0184 45 1 5.2135 -2.4000 0.0008 46 1 3.8376 -3.0960 0.8903 47 1 3.8385 -3.0959 -0.8897 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595621085.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:24 Heat of formation + Delta-G solvation = 25.194995 kcal Electronic energy + Delta-G solvation = -31056.297084 eV Core-core repulsion = 26855.002497 eV Total energy + Delta-G solvation = -4201.294586 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.27877 -41.45392 -39.31588 -38.54006 -36.78695 -35.57813 -34.03438 -33.24532 -32.30649 -30.54765 -30.36003 -28.71196 -27.26645 -26.43290 -25.12252 -23.79790 -23.43743 -22.44376 -21.66924 -21.20724 -19.85507 -18.95624 -18.58435 -18.09034 -17.72791 -16.95787 -16.54007 -16.06951 -16.02579 -15.72728 -15.35217 -15.09524 -14.63941 -14.37096 -14.16985 -13.88633 -13.76556 -13.57937 -13.31542 -13.21942 -13.17153 -12.74640 -12.53199 -12.42855 -12.30271 -11.80489 -11.53426 -11.24612 -11.22257 -11.04584 -10.78979 -10.73954 -10.53084 -10.34086 -10.29482 -10.13100 -9.86341 -9.60899 -9.42812 -9.00681 -8.52029 -8.32320 -8.01622 -6.09663 -4.09823 0.90184 1.11426 1.37858 2.07798 2.27398 2.63113 3.20171 3.33983 3.41687 3.46006 3.63033 3.99360 4.21027 4.30249 4.41028 4.43876 4.63776 4.72842 4.89785 4.97350 5.00653 5.03365 5.12580 5.18431 5.26042 5.31544 5.37014 5.41156 5.53863 5.65745 5.75714 5.85420 5.90137 6.03530 6.20422 6.26343 6.35790 6.51978 6.58934 6.73882 6.81472 6.84987 7.11480 7.18780 7.32633 7.36759 7.40419 7.50270 7.67371 7.80225 8.48987 8.94378 9.54287 11.03210 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018350 B = 0.002586 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.527217 B =10823.642622 C =11462.729086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.517 5.517 3 C 0.264 3.736 4 N -0.555 5.555 5 H 0.426 0.574 6 C 0.253 3.747 7 C 0.138 3.862 8 N -0.534 5.534 9 C 0.061 3.939 10 C -0.120 4.120 11 C -0.112 4.112 12 C 0.020 3.980 13 H 0.042 0.958 14 C -0.514 4.514 15 H 0.071 0.929 16 C 0.074 3.926 17 N -0.900 5.900 18 Si 0.878 3.122 19 H -0.274 1.274 20 H -0.292 1.292 21 H -0.264 1.264 22 C 0.074 3.926 23 N -0.386 5.386 24 C -0.091 4.091 25 C 0.595 3.405 26 O -0.481 6.481 27 N -0.556 5.556 28 C 0.084 3.916 29 C 0.716 3.284 30 O -0.537 6.537 31 H 0.077 0.923 32 H 0.102 0.898 33 H 0.079 0.921 34 H 0.116 0.884 35 H 0.053 0.947 36 H 0.030 0.970 37 H 0.052 0.948 38 H 0.063 0.937 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.050 0.950 42 H 0.264 0.736 43 H 0.075 0.925 44 H 0.029 0.971 45 H 0.104 0.896 46 H 0.081 0.919 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.126 -22.127 -9.657 27.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.245 5.245 3 C 0.044 3.956 4 N -0.165 5.165 5 H 0.266 0.734 6 C -0.013 4.013 7 C 0.008 3.992 8 N -0.260 5.260 9 C -0.067 4.067 10 C -0.158 4.158 11 C -0.150 4.150 12 C 0.001 3.999 13 H 0.060 0.940 14 C -0.552 4.552 15 H 0.089 0.911 16 C -0.128 4.128 17 N -0.538 5.538 18 Si 0.705 3.295 19 H -0.199 1.199 20 H -0.218 1.218 21 H -0.188 1.188 22 C -0.052 4.052 23 N -0.103 5.103 24 C -0.222 4.222 25 C 0.386 3.614 26 O -0.352 6.352 27 N -0.301 5.301 28 C -0.057 4.057 29 C 0.419 3.581 30 O -0.410 6.410 31 H 0.095 0.905 32 H 0.121 0.879 33 H 0.098 0.902 34 H 0.134 0.866 35 H 0.071 0.929 36 H 0.048 0.952 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.093 0.907 44 H 0.047 0.953 45 H 0.123 0.877 46 H 0.099 0.901 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.391 -22.687 -9.355 26.649 hybrid contribution -1.660 -0.094 0.342 1.698 sum -12.051 -22.781 -9.013 27.302 Atomic orbital electron populations 1.22053 0.75154 1.05240 1.04033 1.43634 1.08512 1.01005 1.71396 1.18062 0.92016 0.81231 1.04274 1.42752 1.11637 1.02829 1.59313 0.73435 1.23582 0.78069 0.95487 1.04166 1.20527 1.03110 0.82521 0.93008 1.62018 1.36691 1.18816 1.08468 1.22062 0.90718 0.98440 0.95527 1.21664 1.00659 0.99369 0.94073 1.21878 1.00148 0.91927 1.01075 1.19165 0.94244 0.96604 0.89891 0.93985 1.20906 1.23455 0.90073 1.20785 0.91053 1.25042 0.96609 0.94832 0.96361 1.69908 1.35538 1.11245 1.37059 0.86849 0.81286 0.81318 0.80046 1.19945 1.21843 1.18825 1.22339 0.99639 0.82014 1.01189 1.70241 1.27747 0.97724 1.14548 1.20177 0.87288 0.93440 1.21317 1.16937 0.86568 0.81992 0.75854 1.90884 1.12199 1.86314 1.45769 1.45898 1.05549 1.10247 1.68394 1.21955 0.99571 0.80112 1.04017 1.15210 0.81645 0.82752 0.78519 1.91030 1.65333 1.29773 1.54848 0.90473 0.87931 0.90229 0.86598 0.92869 0.95221 0.92971 0.91837 0.92928 0.92808 0.93149 0.92622 0.90662 0.95312 0.87745 0.90070 0.90099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.37 10.35 59.85 0.62 0.99 16 2 N -0.52 -4.58 3.03 -127.99 -0.39 -4.97 16 3 C 0.26 2.71 7.68 -153.34 -1.18 1.53 16 4 N -0.55 -4.71 5.49 -9.06 -0.05 -4.76 16 5 H 0.43 2.01 8.81 -40.82 -0.36 1.65 16 6 C 0.25 3.03 6.62 -154.38 -1.02 2.01 16 7 C 0.14 1.63 5.59 -4.97 -0.03 1.60 16 8 N -0.53 -8.21 4.65 -236.11 -1.10 -9.30 16 9 C 0.06 0.83 5.31 -3.83 -0.02 0.81 16 10 C -0.12 -1.92 6.09 -26.66 -0.16 -2.08 16 11 C -0.11 -2.20 5.27 -26.61 -0.14 -2.34 16 12 C 0.02 0.45 1.95 -91.69 -0.18 0.27 16 13 H 0.04 0.99 5.25 -51.93 -0.27 0.72 16 14 C -0.51 -13.66 8.86 -34.44 -0.31 -13.96 16 15 H 0.07 2.05 8.06 -52.49 -0.42 1.62 16 16 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 17 N -0.90 -26.86 13.96 55.43 0.77 -26.09 16 18 Si 0.88 21.50 27.02 -169.99 -4.59 16.91 16 19 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 21 H -0.26 -6.23 6.78 56.52 0.38 -5.85 16 22 C 0.07 1.35 4.73 -3.83 -0.02 1.33 16 23 N -0.39 -5.94 11.30 -6.83 -0.08 -6.02 16 24 C -0.09 -1.26 7.42 -82.72 -0.61 -1.88 16 25 C 0.60 8.35 7.63 -12.86 -0.10 8.25 16 26 O -0.48 -8.05 16.50 5.16 0.09 -7.96 16 27 N -0.56 -6.22 2.96 -129.84 -0.38 -6.61 16 28 C 0.08 0.69 9.92 59.85 0.59 1.29 16 29 C 0.72 7.68 8.10 -87.58 -0.71 6.97 16 30 O -0.54 -6.33 15.62 5.28 0.08 -6.25 16 31 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.10 0.53 7.33 -51.93 -0.38 0.15 16 33 H 0.08 0.21 7.84 -51.93 -0.41 -0.20 16 34 H 0.12 1.37 7.99 -51.93 -0.41 0.95 16 35 H 0.05 0.48 8.12 -51.93 -0.42 0.05 16 36 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.05 0.62 6.62 -51.93 -0.34 0.28 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 43 H 0.07 1.39 8.02 -51.93 -0.42 0.97 16 44 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.10 0.86 6.90 -51.93 -0.36 0.50 16 46 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 379.01 15.07 5.71 5.71 Total: -1.00 -35.25 379.01 -10.05 -45.29 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -6.75 Total: -2.71 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: -3.36 Total: 6.75 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: -1.22 Total: -57.74 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: 0.17 Total: -14.22 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.59 Total: 16.91 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.25 -10.05 -45.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595621085.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.490 kcal (2) G-P(sol) polarization free energy of solvation -35.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds