Wall clock time and date at job start Wed Apr 1 2020 05:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37586 * 119.60346 * 2 1 4 4 N 1.35913 * 134.42146 * 359.97438 * 3 2 1 5 5 H 0.96998 * 126.21263 * 359.97438 * 4 3 2 6 6 C 1.36462 * 107.58447 * 179.97438 * 4 3 2 7 7 C 1.50700 * 125.22793 * 180.02562 * 6 4 3 8 8 N 1.46907 * 109.46817 * 95.00689 * 7 6 4 9 9 C 1.46851 * 110.99664 * 294.20682 * 8 7 6 10 10 C 1.53034 * 109.52109 * 174.16277 * 9 8 7 11 11 C 1.53113 * 109.27903 * 59.17763 * 10 9 8 12 12 C 1.53118 * 109.16299 * 302.34308 * 11 10 9 13 13 H 1.08997 * 109.50645 * 297.71436 * 12 11 10 14 14 C 1.50705 * 109.50356 * 177.59543 * 12 11 10 15 15 H 1.08000 * 119.99964 * 275.36675 * 14 12 11 16 16 C 1.37872 * 119.99773 * 95.37299 * 14 12 11 17 17 N 1.31515 * 119.99734 * 185.77329 * 16 14 12 18 18 Si 1.86801 * 120.00181 * 5.76815 * 16 14 12 19 19 H 1.48497 * 109.46940 * 84.78589 * 18 16 14 20 20 H 1.48503 * 109.46912 * 204.78115 * 18 16 14 21 21 H 1.48500 * 109.47107 * 324.78359 * 18 16 14 22 22 C 1.46841 * 110.99796 * 170.00005 * 8 7 6 23 23 N 1.30173 * 109.53860 * 0.02562 * 6 4 3 24 24 C 1.35454 * 109.08989 * 359.97438 * 23 6 4 25 25 C 1.46385 * 134.30693 * 179.97438 * 24 23 6 26 26 O 1.21737 * 120.74953 * 0.04949 * 25 24 23 27 27 N 1.35056 * 118.49874 * 180.02562 * 25 24 23 28 28 C 1.46500 * 119.54483 * 180.02562 * 27 25 24 29 29 C 1.34349 * 120.91849 * 359.70381 * 27 25 24 30 30 O 1.21594 * 118.84770 * 180.27908 * 29 27 25 31 31 H 1.09002 * 109.47218 * 90.00506 * 1 2 3 32 32 H 1.09001 * 109.47634 * 210.00272 * 1 2 3 33 33 H 1.09002 * 109.47440 * 329.99764 * 1 2 3 34 34 H 1.08998 * 109.46915 * 214.99729 * 7 6 4 35 35 H 1.08993 * 109.47450 * 335.00544 * 7 6 4 36 36 H 1.09002 * 109.45776 * 294.17878 * 9 8 7 37 37 H 1.09004 * 109.45989 * 54.14556 * 9 8 7 38 38 H 1.09001 * 109.50248 * 299.23484 * 10 9 8 39 39 H 1.09003 * 109.53638 * 179.14176 * 10 9 8 40 40 H 1.08998 * 109.52081 * 182.43935 * 11 10 9 41 41 H 1.09002 * 109.57788 * 62.28488 * 11 10 9 42 42 H 0.97001 * 120.00060 * 179.97438 * 17 16 14 43 43 H 1.09000 * 109.46152 * 305.84543 * 22 8 7 44 44 H 1.08994 * 109.46875 * 65.82212 * 22 8 7 45 45 H 1.09003 * 109.46962 * 359.97438 * 28 27 25 46 46 H 1.08997 * 109.47785 * 119.99312 * 28 27 25 47 47 H 1.09001 * 109.46811 * 239.99945 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1447 1.1963 0.0000 4 7 1.7706 2.5029 -0.0004 5 1 0.8605 2.8384 -0.0012 6 6 2.9078 3.2573 0.0004 7 6 2.9516 4.7636 0.0009 8 7 3.0859 5.2491 1.3809 9 6 1.8896 4.9290 2.1701 10 6 2.1223 5.3175 3.6319 11 6 2.4251 6.8161 3.7146 12 6 3.6460 7.1308 2.8457 13 1 4.5140 6.5951 3.2300 14 6 3.9154 8.6133 2.8746 15 1 3.3882 9.2712 2.1996 16 6 4.8351 9.1297 3.7625 17 7 4.9883 10.4316 3.8677 18 14 5.8633 7.9800 4.8164 19 1 7.0565 7.5401 4.0496 20 1 6.2990 8.6916 6.0448 21 1 5.0517 6.7946 5.1925 22 6 3.3692 6.6898 1.4066 23 7 3.9487 2.4757 0.0008 24 6 3.5344 1.1860 0.0008 25 6 4.2189 -0.1079 0.0006 26 8 5.4348 -0.1688 0.0014 27 7 3.4711 -1.2325 0.0001 28 6 4.1325 -2.5398 0.0005 29 6 2.1292 -1.1692 0.0057 30 8 1.4930 -2.2054 0.0103 31 1 -0.3634 -0.0001 -1.0277 32 1 -0.3634 -0.8899 0.5139 33 1 -0.3634 0.8900 0.5139 34 1 3.8040 5.1024 -0.5880 35 1 2.0315 5.1541 -0.4337 36 1 1.0369 5.4834 1.7781 37 1 1.6879 3.8597 2.1061 38 1 2.9663 4.7532 4.0285 39 1 1.2289 5.0940 4.2151 40 1 2.6341 7.0889 4.7490 41 1 1.5662 7.3827 3.3549 42 1 5.6351 10.7950 4.4927 43 1 4.2420 6.8994 0.7883 44 1 2.5096 7.2360 1.0184 45 1 5.2135 -2.4000 0.0008 46 1 3.8376 -3.0960 0.8903 47 1 3.8385 -3.0959 -0.8897 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595621085.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:22 Heat of formation + Delta-G solvation = -0.168481 kcal Electronic energy + Delta-G solvation = -31057.396926 eV Core-core repulsion = 26855.002497 eV Total energy + Delta-G solvation = -4202.394429 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -44.13635 -42.31669 -40.26517 -39.83200 -37.59949 -36.50306 -35.58406 -34.15491 -33.99945 -31.95821 -31.37059 -29.57359 -27.89931 -27.43147 -26.90052 -24.69562 -24.36430 -23.62612 -23.02545 -22.15356 -20.77115 -20.42601 -19.48863 -18.96805 -18.90300 -18.54205 -17.37865 -17.16142 -16.94516 -16.57207 -16.45209 -16.03799 -15.95520 -15.71803 -15.23294 -15.05498 -15.01195 -14.69467 -14.45629 -14.39775 -13.93377 -13.71377 -13.63046 -13.55899 -13.37019 -12.95821 -12.85514 -12.83062 -12.43118 -12.38870 -12.03233 -11.81535 -11.77546 -11.73940 -11.40237 -11.28948 -11.26842 -11.06658 -10.95786 -10.81530 -10.60163 -9.26326 -9.10240 -8.26595 -6.27841 0.02595 0.34102 0.44724 1.24238 1.36102 1.38919 1.39844 1.48714 1.90881 2.26609 2.37359 2.77164 3.07244 3.16730 3.19311 3.55071 3.82649 3.95931 4.07079 4.14870 4.21118 4.27793 4.34396 4.34654 4.40390 4.41072 4.48545 4.59294 4.62810 4.72534 4.72721 4.74796 4.84506 4.87945 4.94320 5.01266 5.08971 5.11237 5.22661 5.27943 5.60877 5.68896 5.73219 5.81356 6.06712 6.14119 6.21911 6.27510 6.40531 6.50053 6.78331 6.81075 7.38709 8.89989 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018350 B = 0.002586 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.527217 B =10823.642622 C =11462.729086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.509 5.509 3 C 0.300 3.700 4 N -0.529 5.529 5 H 0.448 0.552 6 C 0.259 3.741 7 C 0.141 3.859 8 N -0.554 5.554 9 C 0.063 3.937 10 C -0.115 4.115 11 C -0.109 4.109 12 C 0.014 3.986 13 H 0.025 0.975 14 C -0.506 4.506 15 H 0.039 0.961 16 C 0.017 3.983 17 N -0.949 5.949 18 Si 0.935 3.065 19 H -0.274 1.274 20 H -0.292 1.292 21 H -0.251 1.251 22 C 0.088 3.912 23 N -0.435 5.435 24 C -0.136 4.136 25 C 0.591 3.409 26 O -0.525 6.525 27 N -0.554 5.554 28 C 0.078 3.922 29 C 0.713 3.287 30 O -0.546 6.546 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.095 0.905 36 H 0.054 0.946 37 H 0.077 0.923 38 H 0.046 0.954 39 H 0.082 0.918 40 H 0.031 0.969 41 H 0.053 0.947 42 H 0.264 0.736 43 H 0.064 0.936 44 H 0.037 0.963 45 H 0.099 0.901 46 H 0.093 0.907 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.286 -24.352 -10.217 30.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.237 5.237 3 C 0.077 3.923 4 N -0.142 5.142 5 H 0.293 0.707 6 C -0.008 4.008 7 C 0.012 3.988 8 N -0.279 5.279 9 C -0.065 4.065 10 C -0.153 4.153 11 C -0.147 4.147 12 C -0.005 4.005 13 H 0.043 0.957 14 C -0.545 4.545 15 H 0.058 0.942 16 C -0.180 4.180 17 N -0.589 5.589 18 Si 0.760 3.240 19 H -0.199 1.199 20 H -0.218 1.218 21 H -0.175 1.175 22 C -0.039 4.039 23 N -0.153 5.153 24 C -0.266 4.266 25 C 0.384 3.616 26 O -0.400 6.400 27 N -0.299 5.299 28 C -0.061 4.061 29 C 0.416 3.584 30 O -0.420 6.420 31 H 0.114 0.886 32 H 0.120 0.880 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.113 0.887 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.065 0.935 39 H 0.101 0.899 40 H 0.050 0.950 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.082 0.918 44 H 0.055 0.945 45 H 0.117 0.883 46 H 0.112 0.888 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -13.638 -24.953 -9.926 30.119 hybrid contribution -0.798 0.575 0.443 1.079 sum -14.436 -24.378 -9.484 29.877 Atomic orbital electron populations 1.22460 0.72309 1.06758 1.05807 1.43832 1.10003 0.99817 1.70035 1.17819 0.90851 0.82117 1.01509 1.42488 1.12110 1.01511 1.58131 0.70682 1.23404 0.78410 0.95293 1.03679 1.20557 1.05034 0.82279 0.90964 1.61795 1.38514 1.16517 1.11123 1.22103 0.90663 1.00224 0.93496 1.21609 1.01327 0.95762 0.96575 1.21716 0.98820 0.95146 0.99018 1.19152 0.94895 0.93220 0.93237 0.95686 1.21251 1.21920 0.92436 1.18893 0.94228 1.25786 0.98202 0.95937 0.98102 1.70039 1.37070 1.13071 1.38752 0.85927 0.79797 0.79815 0.78428 1.19920 1.21820 1.17498 1.21916 0.99672 0.84347 0.97967 1.70132 1.30104 0.98924 1.16128 1.20226 0.89162 0.93029 1.24210 1.17178 0.86276 0.82875 0.75226 1.90845 1.13860 1.86956 1.48294 1.45994 1.05935 1.10367 1.67564 1.22153 0.99299 0.79277 1.05409 1.15308 0.81315 0.83264 0.78528 1.91031 1.65323 1.30178 1.55430 0.88596 0.88050 0.87204 0.87168 0.88749 0.92775 0.90502 0.93546 0.89943 0.94977 0.92818 0.92726 0.91761 0.94530 0.88268 0.88799 0.88532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.34 10.35 127.77 1.32 1.66 16 2 N -0.51 -7.29 3.03 -677.29 -2.05 -9.34 16 3 C 0.30 5.20 7.68 132.42 1.02 6.22 16 4 N -0.53 -6.60 5.49 -182.57 -1.00 -7.61 16 5 H 0.45 1.44 8.81 -92.71 -0.82 0.62 16 6 C 0.26 5.41 6.62 137.76 0.91 6.32 16 7 C 0.14 2.83 5.59 85.56 0.48 3.31 16 8 N -0.55 -15.40 4.65 -900.92 -4.19 -19.59 16 9 C 0.06 1.43 5.31 86.32 0.46 1.88 16 10 C -0.11 -3.31 6.09 30.64 0.19 -3.12 16 11 C -0.11 -4.12 5.27 30.67 0.16 -3.95 16 12 C 0.01 0.62 1.95 -11.48 -0.02 0.60 16 13 H 0.02 1.17 5.25 -2.39 -0.01 1.16 16 14 C -0.51 -27.50 8.86 25.60 0.23 -27.27 16 15 H 0.04 2.35 8.06 -2.91 -0.02 2.32 16 16 C 0.02 0.96 5.47 84.65 0.46 1.43 16 17 N -0.95 -58.52 13.96 21.45 0.30 -58.22 16 18 Si 0.93 45.31 27.02 68.60 1.85 47.16 16 19 H -0.27 -13.14 7.11 99.48 0.71 -12.43 16 20 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 21 H -0.25 -11.51 6.78 99.48 0.67 -10.84 16 22 C 0.09 3.07 4.73 86.33 0.41 3.48 16 23 N -0.44 -12.92 11.30 -175.52 -1.98 -14.91 16 24 C -0.14 -3.65 7.42 40.88 0.30 -3.35 16 25 C 0.59 16.66 7.63 86.32 0.66 17.32 16 26 O -0.53 -18.30 16.50 -4.47 -0.07 -18.38 16 27 N -0.55 -11.95 2.96 -801.23 -2.37 -14.32 16 28 C 0.08 1.24 9.92 127.77 1.27 2.51 16 29 C 0.71 13.76 8.10 179.28 1.45 15.21 16 30 O -0.55 -11.58 15.62 -4.01 -0.06 -11.64 16 31 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.10 0.64 7.33 -2.39 -0.02 0.62 16 33 H 0.11 -0.08 7.84 -2.39 -0.02 -0.10 16 34 H 0.11 2.38 7.99 -2.39 -0.02 2.36 16 35 H 0.09 1.17 8.12 -2.39 -0.02 1.15 16 36 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.08 1.41 6.62 -2.39 -0.02 1.39 16 38 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 43 H 0.06 2.35 8.02 -2.39 -0.02 2.33 16 44 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.10 1.68 6.90 -2.39 -0.02 1.67 16 46 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 47 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -81.51 379.01 -0.12 -81.63 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: 0.16 Total: 2.97 kcal Atomic # 6 Polarization: 12.96 SS G_CDS: 9.29 Total: 22.25 kcal Atomic # 7 Polarization: -112.70 SS G_CDS: -11.29 Total: -123.99 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: -0.14 Total: -30.02 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.85 Total: 47.16 kcal Total: -81.51 -0.12 -81.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595621085.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.462 kcal (2) G-P(sol) polarization free energy of solvation -81.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds