Wall clock time and date at job start Wed Apr 1 2020 06:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42892 * 114.00182 * 2 1 4 4 C 1.53001 * 109.47413 * 180.02562 * 3 2 1 5 5 N 1.46901 * 109.46896 * 65.00102 * 4 3 2 6 6 C 1.46895 * 111.00380 * 66.04421 * 5 4 3 7 7 C 1.50697 * 109.47067 * 191.79773 * 6 5 4 8 8 H 1.07994 * 120.00115 * 5.05061 * 7 6 5 9 9 C 1.37886 * 119.99755 * 185.04987 * 7 6 5 10 10 N 1.31515 * 119.99994 * 5.12604 * 9 7 6 11 11 Si 1.86794 * 119.99853 * 185.12372 * 9 7 6 12 12 H 1.48498 * 109.47464 * 64.99641 * 11 9 7 13 13 H 1.48497 * 109.47082 * 185.00013 * 11 9 7 14 14 H 1.48508 * 109.47032 * 304.99862 * 11 9 7 15 15 C 1.46897 * 110.99825 * 190.00424 * 5 4 3 16 16 C 1.50701 * 109.47460 * 74.81084 * 15 5 4 17 17 C 1.39872 * 126.04428 * 272.92934 * 16 15 5 18 18 N 1.30832 * 108.20055 * 179.73802 * 17 16 15 19 19 N 1.40083 * 108.20745 * 0.40830 * 18 17 16 20 20 C 1.46505 * 126.03788 * 179.85346 * 19 18 17 21 21 C 1.50699 * 109.46927 * 304.87760 * 20 19 18 22 22 C 1.38245 * 119.97842 * 89.99941 * 21 20 19 23 23 C 1.38195 * 120.03099 * 180.02562 * 22 21 20 24 24 C 1.38468 * 119.97115 * 0.22735 * 23 22 21 25 25 F 1.35095 * 120.02455 * 179.73070 * 24 23 22 26 26 C 1.38467 * 119.94451 * 359.50029 * 24 23 22 27 27 C 1.38192 * 119.97406 * 0.52252 * 26 24 23 28 28 C 1.34944 * 107.92521 * 359.58738 * 19 18 17 29 29 H 1.09004 * 109.46781 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46449 * 299.99942 * 1 2 3 31 31 H 1.08999 * 109.46817 * 60.00251 * 1 2 3 32 32 H 1.08998 * 109.47300 * 59.99865 * 3 2 1 33 33 H 1.09003 * 109.47150 * 300.00314 * 3 2 1 34 34 H 1.08995 * 109.46559 * 304.99859 * 4 3 2 35 35 H 1.08995 * 109.47092 * 184.99935 * 4 3 2 36 36 H 1.08994 * 109.47479 * 311.80166 * 6 5 4 37 37 H 1.09009 * 109.46778 * 71.80175 * 6 5 4 38 38 H 0.96999 * 119.99624 * 180.02562 * 10 9 7 39 39 H 1.09007 * 109.47135 * 314.81671 * 15 5 4 40 40 H 1.09003 * 109.47354 * 194.81529 * 15 5 4 41 41 H 1.08001 * 125.89137 * 0.02562 * 17 16 15 42 42 H 1.08996 * 109.47265 * 184.87499 * 20 19 18 43 43 H 1.08999 * 109.47034 * 64.87407 * 20 19 18 44 44 H 1.08002 * 119.98329 * 359.97326 * 22 21 20 45 45 H 1.07999 * 120.02004 * 179.97438 * 23 22 21 46 46 H 1.07999 * 120.00805 * 180.25737 * 26 24 23 47 47 H 1.08005 * 119.98534 * 179.70477 * 27 26 24 48 48 H 1.08000 * 126.12843 * 180.21884 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9769 0.5627 -1.2562 6 6 3.6950 1.4354 -2.4036 7 6 3.8877 0.6618 -3.6825 8 1 4.1096 -0.3944 -3.6464 9 6 3.7809 1.3028 -4.8986 10 7 3.6111 2.6062 -4.9424 11 14 3.8772 0.3197 -6.4840 12 1 2.7153 -0.6013 -6.5669 13 1 3.8574 1.2472 -7.6436 14 1 5.1358 -0.4685 -6.5020 15 6 5.4026 0.2136 -1.1980 16 6 5.5862 -1.0067 -0.3330 17 6 5.7544 -1.0136 1.0555 18 7 5.8764 -2.2562 1.4462 19 7 5.7989 -3.0801 0.3159 20 6 5.8921 -4.5421 0.3070 21 6 7.1727 -4.9679 0.9776 22 6 7.1935 -5.2057 2.3393 23 6 8.3674 -5.5957 2.9554 24 6 9.5243 -5.7438 2.2091 25 9 10.6737 -6.1197 2.8112 26 6 9.5009 -5.5109 0.8443 27 6 8.3259 -5.1205 0.2306 28 6 5.6174 -2.2895 -0.7625 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6887 1.8463 0.8899 33 1 1.6887 1.8463 -0.8900 34 1 3.8514 0.5682 0.8409 35 1 3.9786 2.1764 0.0889 36 1 2.6663 1.7910 -2.3456 37 1 4.3752 2.2871 -2.3881 38 1 3.5356 3.0569 -5.7979 39 1 5.9637 1.0467 -0.7745 40 1 5.7668 0.0042 -2.2038 41 1 5.7749 -0.1436 1.6951 42 1 5.8844 -4.9004 -0.7224 43 1 5.0428 -4.9636 0.8448 44 1 6.2921 -5.0857 2.9219 45 1 8.3835 -5.7809 4.0193 46 1 10.4017 -5.6301 0.2606 47 1 8.3086 -4.9342 -0.8331 48 1 5.5157 -2.6212 -1.7853 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615113786.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:28:07 Heat of formation + Delta-G solvation = 25.584173 kcal Electronic energy + Delta-G solvation = -29790.463069 eV Core-core repulsion = 25569.265397 eV Total energy + Delta-G solvation = -4221.197672 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.17767 -40.91510 -39.30816 -37.71136 -36.08256 -33.96729 -32.53310 -31.45826 -30.67478 -30.51901 -29.01977 -27.11549 -26.16516 -25.56067 -23.83963 -23.35943 -22.54516 -22.13852 -20.54982 -20.08021 -19.34905 -17.95976 -16.77823 -16.61230 -16.50370 -16.08452 -15.87277 -15.82247 -15.40419 -14.93951 -14.69976 -14.45980 -14.32989 -13.93995 -13.92048 -13.80128 -13.69874 -13.38572 -13.15180 -12.57679 -12.47174 -12.35137 -12.08782 -12.01397 -11.78189 -11.63934 -11.34898 -11.29800 -11.11084 -10.94212 -10.73579 -10.63287 -10.22364 -9.99769 -9.75599 -9.40514 -9.19722 -9.07154 -9.02882 -8.95569 -8.40079 -7.94396 -7.05933 -5.99986 -3.99501 0.72951 0.94352 2.25608 2.71741 3.23561 3.33491 3.38367 3.40492 3.40777 3.95189 4.25173 4.33684 4.38521 4.45308 4.58336 4.67618 4.92575 5.08279 5.13524 5.21647 5.28224 5.34636 5.35338 5.54011 5.59188 5.63715 5.67318 5.80566 5.81942 5.83172 5.89776 5.90766 5.92811 5.97484 6.07109 6.16188 6.22894 6.23962 6.48318 6.55806 6.64114 6.75607 7.05829 7.33004 7.34787 7.42742 7.71678 7.87651 8.04901 8.18197 8.30601 8.64239 9.08643 9.63717 11.10620 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.010835 B = 0.002574 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.563974 B =10874.271734 C =12461.666144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.369 6.369 3 C 0.067 3.933 4 C 0.057 3.943 5 N -0.522 5.522 6 C 0.189 3.811 7 C -0.500 4.500 8 H 0.062 0.938 9 C 0.054 3.946 10 N -0.900 5.900 11 Si 0.895 3.105 12 H -0.278 1.278 13 H -0.289 1.289 14 H -0.277 1.277 15 C 0.136 3.864 16 C -0.203 4.203 17 C 0.051 3.949 18 N -0.301 5.301 19 N -0.378 5.378 20 C 0.180 3.820 21 C -0.114 4.114 22 C -0.054 4.054 23 C -0.158 4.158 24 C 0.103 3.897 25 F -0.141 7.141 26 C -0.158 4.158 27 C -0.070 4.070 28 C 0.068 3.932 29 H 0.077 0.923 30 H 0.029 0.971 31 H 0.038 0.962 32 H 0.036 0.964 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.034 0.966 36 H 0.027 0.973 37 H -0.006 1.006 38 H 0.260 0.740 39 H 0.025 0.975 40 H 0.090 0.910 41 H 0.173 0.827 42 H 0.104 0.896 43 H 0.091 0.909 44 H 0.135 0.865 45 H 0.136 0.864 46 H 0.136 0.864 47 H 0.134 0.866 48 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.334 -13.828 13.481 20.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.287 6.287 3 C -0.010 4.010 4 C -0.071 4.071 5 N -0.246 5.246 6 C 0.064 3.936 7 C -0.539 4.539 8 H 0.081 0.919 9 C -0.146 4.146 10 N -0.540 5.540 11 Si 0.723 3.277 12 H -0.204 1.204 13 H -0.215 1.215 14 H -0.202 1.202 15 C 0.007 3.993 16 C -0.215 4.215 17 C -0.136 4.136 18 N -0.122 5.122 19 N -0.162 5.162 20 C 0.059 3.941 21 C -0.115 4.115 22 C -0.073 4.073 23 C -0.177 4.177 24 C 0.083 3.917 25 F -0.120 7.120 26 C -0.177 4.177 27 C -0.089 4.089 28 C -0.077 4.077 29 H 0.096 0.904 30 H 0.048 0.952 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.052 0.948 36 H 0.045 0.955 37 H 0.012 0.988 38 H 0.070 0.930 39 H 0.043 0.957 40 H 0.108 0.892 41 H 0.190 0.810 42 H 0.123 0.877 43 H 0.109 0.891 44 H 0.153 0.847 45 H 0.154 0.846 46 H 0.154 0.846 47 H 0.152 0.848 48 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 5.358 -15.211 14.275 21.537 hybrid contribution 0.253 1.135 -1.419 1.834 sum 5.611 -14.076 12.857 19.872 Atomic orbital electron populations 1.22641 0.82767 1.01852 0.99174 1.88011 1.17938 1.27624 1.95122 1.22623 0.94336 0.84780 0.99255 1.22035 0.93009 0.97085 0.95016 1.62020 1.15672 1.44967 1.01971 1.19793 0.96064 0.90691 0.87025 1.21104 1.47225 0.95683 0.89858 0.91946 1.24980 0.95738 0.94783 0.99141 1.69952 1.50633 1.07756 1.25654 0.86614 0.78567 0.79773 0.82750 1.20359 1.21529 1.20243 1.20233 0.89298 0.91288 0.98522 1.20184 1.12365 0.95163 0.93749 1.23687 0.99983 0.94866 0.95044 1.77191 1.25158 1.01536 1.08335 1.48393 1.57601 1.05304 1.04882 1.20421 0.95267 0.76138 1.02284 1.19961 0.95513 1.01585 0.94419 1.20923 0.97781 0.94837 0.93744 1.21146 0.91918 1.03778 1.00827 1.17786 0.82126 1.00348 0.91400 1.91499 1.47842 1.88839 1.83793 1.21116 0.99899 1.03621 0.93046 1.20950 0.91190 0.96345 1.00386 1.22304 1.01350 0.90858 0.93196 0.90439 0.95229 0.94308 0.94597 0.92522 0.91168 0.94781 0.95467 0.98809 0.92992 0.95652 0.89181 0.81044 0.87741 0.89116 0.84694 0.84643 0.84631 0.84840 0.81172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.37 -6.93 10.65 -35.23 -0.38 -7.31 16 3 C 0.07 1.19 6.01 37.16 0.22 1.41 16 4 C 0.06 1.04 5.17 -3.82 -0.02 1.02 16 5 N -0.52 -11.04 4.36 -237.52 -1.03 -12.07 16 6 C 0.19 4.77 4.60 -4.98 -0.02 4.75 16 7 C -0.50 -13.57 8.16 -34.44 -0.28 -13.86 16 8 H 0.06 1.67 7.61 -52.49 -0.40 1.28 16 9 C 0.05 1.51 5.45 -17.82 -0.10 1.41 16 10 N -0.90 -26.21 13.28 55.43 0.74 -25.47 16 11 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 14 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 15 C 0.14 2.58 5.32 -4.98 -0.03 2.56 16 16 C -0.20 -3.40 5.28 -105.05 -0.55 -3.96 16 17 C 0.05 0.79 10.60 -17.37 -0.18 0.61 16 18 N -0.30 -4.66 12.41 30.62 0.38 -4.28 16 19 N -0.38 -5.17 3.67 -62.55 -0.23 -5.40 16 20 C 0.18 1.74 6.63 -5.19 -0.03 1.71 16 21 C -0.11 -1.10 5.32 -104.62 -0.56 -1.65 16 22 C -0.05 -0.51 9.70 -39.59 -0.38 -0.90 16 23 C -0.16 -1.47 10.03 -39.51 -0.40 -1.87 16 24 C 0.10 1.04 7.30 -39.41 -0.29 0.75 16 25 F -0.14 -1.52 17.27 2.25 0.04 -1.48 16 26 C -0.16 -1.47 10.03 -39.51 -0.40 -1.86 16 27 C -0.07 -0.64 9.70 -39.60 -0.38 -1.02 16 28 C 0.07 1.03 11.36 -17.22 -0.20 0.83 16 29 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 1.10 6.14 -51.93 -0.32 0.78 16 34 H 0.07 1.20 6.04 -51.93 -0.31 0.89 16 35 H 0.03 0.60 8.12 -51.93 -0.42 0.18 16 36 H 0.03 0.73 5.95 -51.93 -0.31 0.42 16 37 H -0.01 -0.16 8.09 -51.92 -0.42 -0.58 16 38 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 39 H 0.03 0.47 8.01 -51.93 -0.42 0.05 16 40 H 0.09 1.87 6.81 -51.93 -0.35 1.51 16 41 H 0.17 2.32 7.83 -52.49 -0.41 1.91 16 42 H 0.10 0.76 8.01 -51.93 -0.42 0.34 16 43 H 0.09 0.79 8.08 -51.93 -0.42 0.37 16 44 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 45 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 46 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 47 H 0.13 1.01 8.06 -52.48 -0.42 0.58 16 48 H 0.17 2.31 8.06 -52.49 -0.42 1.88 16 LS Contribution 406.05 15.07 6.12 6.12 Total: -1.00 -32.54 406.05 -9.01 -41.55 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -7.14 Total: 0.68 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -2.48 Total: -8.48 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: -0.15 Total: -47.23 kcal Atomic # 8 Polarization: -6.93 SS G_CDS: -0.38 Total: -7.31 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.54 -9.01 -41.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615113786.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.136 kcal (2) G-P(sol) polarization free energy of solvation -32.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds