Wall clock time and date at job start Wed Apr 1 2020 06:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42892 * 114.00182 * 2 1 4 4 C 1.53001 * 109.47413 * 180.02562 * 3 2 1 5 5 N 1.46901 * 109.46896 * 65.00102 * 4 3 2 6 6 C 1.46895 * 111.00380 * 66.04421 * 5 4 3 7 7 C 1.50697 * 109.47067 * 191.79773 * 6 5 4 8 8 H 1.07994 * 120.00115 * 5.05061 * 7 6 5 9 9 C 1.37886 * 119.99755 * 185.04987 * 7 6 5 10 10 N 1.31515 * 119.99994 * 5.12604 * 9 7 6 11 11 Si 1.86794 * 119.99853 * 185.12372 * 9 7 6 12 12 H 1.48498 * 109.47464 * 64.99641 * 11 9 7 13 13 H 1.48497 * 109.47082 * 185.00013 * 11 9 7 14 14 H 1.48508 * 109.47032 * 304.99862 * 11 9 7 15 15 C 1.46897 * 110.99825 * 190.00424 * 5 4 3 16 16 C 1.50701 * 109.47460 * 74.81084 * 15 5 4 17 17 C 1.39872 * 126.04428 * 272.92934 * 16 15 5 18 18 N 1.30832 * 108.20055 * 179.73802 * 17 16 15 19 19 N 1.40083 * 108.20745 * 0.40830 * 18 17 16 20 20 C 1.46505 * 126.03788 * 179.85346 * 19 18 17 21 21 C 1.50699 * 109.46927 * 304.87760 * 20 19 18 22 22 C 1.38245 * 119.97842 * 89.99941 * 21 20 19 23 23 C 1.38195 * 120.03099 * 180.02562 * 22 21 20 24 24 C 1.38468 * 119.97115 * 0.22735 * 23 22 21 25 25 F 1.35095 * 120.02455 * 179.73070 * 24 23 22 26 26 C 1.38467 * 119.94451 * 359.50029 * 24 23 22 27 27 C 1.38192 * 119.97406 * 0.52252 * 26 24 23 28 28 C 1.34944 * 107.92521 * 359.58738 * 19 18 17 29 29 H 1.09004 * 109.46781 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46449 * 299.99942 * 1 2 3 31 31 H 1.08999 * 109.46817 * 60.00251 * 1 2 3 32 32 H 1.08998 * 109.47300 * 59.99865 * 3 2 1 33 33 H 1.09003 * 109.47150 * 300.00314 * 3 2 1 34 34 H 1.08995 * 109.46559 * 304.99859 * 4 3 2 35 35 H 1.08995 * 109.47092 * 184.99935 * 4 3 2 36 36 H 1.08994 * 109.47479 * 311.80166 * 6 5 4 37 37 H 1.09009 * 109.46778 * 71.80175 * 6 5 4 38 38 H 0.96999 * 119.99624 * 180.02562 * 10 9 7 39 39 H 1.09007 * 109.47135 * 314.81671 * 15 5 4 40 40 H 1.09003 * 109.47354 * 194.81529 * 15 5 4 41 41 H 1.08001 * 125.89137 * 0.02562 * 17 16 15 42 42 H 1.08996 * 109.47265 * 184.87499 * 20 19 18 43 43 H 1.08999 * 109.47034 * 64.87407 * 20 19 18 44 44 H 1.08002 * 119.98329 * 359.97326 * 22 21 20 45 45 H 1.07999 * 120.02004 * 179.97438 * 23 22 21 46 46 H 1.07999 * 120.00805 * 180.25737 * 26 24 23 47 47 H 1.08005 * 119.98534 * 179.70477 * 27 26 24 48 48 H 1.08000 * 126.12843 * 180.21884 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9769 0.5627 -1.2562 6 6 3.6950 1.4354 -2.4036 7 6 3.8877 0.6618 -3.6825 8 1 4.1096 -0.3944 -3.6464 9 6 3.7809 1.3028 -4.8986 10 7 3.6111 2.6062 -4.9424 11 14 3.8772 0.3197 -6.4840 12 1 2.7153 -0.6013 -6.5669 13 1 3.8574 1.2472 -7.6436 14 1 5.1358 -0.4685 -6.5020 15 6 5.4026 0.2136 -1.1980 16 6 5.5862 -1.0067 -0.3330 17 6 5.7544 -1.0136 1.0555 18 7 5.8764 -2.2562 1.4462 19 7 5.7989 -3.0801 0.3159 20 6 5.8921 -4.5421 0.3070 21 6 7.1727 -4.9679 0.9776 22 6 7.1935 -5.2057 2.3393 23 6 8.3674 -5.5957 2.9554 24 6 9.5243 -5.7438 2.2091 25 9 10.6737 -6.1197 2.8112 26 6 9.5009 -5.5109 0.8443 27 6 8.3259 -5.1205 0.2306 28 6 5.6174 -2.2895 -0.7625 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6887 1.8463 0.8899 33 1 1.6887 1.8463 -0.8900 34 1 3.8514 0.5682 0.8409 35 1 3.9786 2.1764 0.0889 36 1 2.6663 1.7910 -2.3456 37 1 4.3752 2.2871 -2.3881 38 1 3.5356 3.0569 -5.7979 39 1 5.9637 1.0467 -0.7745 40 1 5.7668 0.0042 -2.2038 41 1 5.7749 -0.1436 1.6951 42 1 5.8844 -4.9004 -0.7224 43 1 5.0428 -4.9636 0.8448 44 1 6.2921 -5.0857 2.9219 45 1 8.3835 -5.7809 4.0193 46 1 10.4017 -5.6301 0.2606 47 1 8.3086 -4.9342 -0.8331 48 1 5.5157 -2.6212 -1.7853 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615113786.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:28:04 Heat of formation + Delta-G solvation = 6.393552 kcal Electronic energy + Delta-G solvation = -29791.295237 eV Core-core repulsion = 25569.265397 eV Total energy + Delta-G solvation = -4222.029840 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -49.96198 -42.04471 -40.05573 -39.16660 -37.60981 -34.98682 -34.50337 -32.15908 -31.97444 -31.46986 -30.61359 -28.65616 -27.34132 -26.79692 -25.35584 -24.23847 -24.05716 -23.02147 -21.80624 -21.30730 -20.73800 -18.70416 -18.51644 -17.81287 -17.42721 -17.28300 -16.90983 -16.84099 -16.62525 -16.60110 -16.00717 -15.71585 -15.38414 -15.25160 -15.18419 -14.71147 -14.63531 -14.53063 -14.40225 -13.96664 -13.75859 -13.46837 -13.33065 -13.16976 -13.10433 -12.88986 -12.78193 -12.69208 -12.49865 -12.34789 -12.24336 -11.98219 -11.96985 -11.55247 -11.27597 -11.13932 -10.56051 -10.37958 -10.17891 -10.09250 -9.72163 -9.18158 -8.76197 -8.11431 -6.18935 -0.01976 0.25042 1.10812 1.45254 1.48374 1.55551 1.76850 1.98338 2.46743 2.65144 3.04131 3.20775 3.23034 3.48099 3.59058 3.69372 3.88866 3.93377 4.13081 4.20216 4.24071 4.26612 4.38413 4.46607 4.50069 4.54062 4.56238 4.60215 4.63010 4.72160 4.78024 4.88403 4.90042 4.93559 4.95061 5.02992 5.10355 5.11019 5.20444 5.31172 5.35793 5.45692 5.51779 5.75768 5.84757 5.85653 6.18720 6.25965 6.41215 6.51688 6.80573 6.89690 6.98190 7.49518 8.98798 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.010835 B = 0.002574 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.563974 B =10874.271734 C =12461.666144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.396 6.396 3 C 0.070 3.930 4 C 0.056 3.944 5 N -0.527 5.527 6 C 0.206 3.794 7 C -0.510 4.510 8 H 0.063 0.937 9 C 0.001 3.999 10 N -0.937 5.937 11 Si 0.963 3.037 12 H -0.272 1.272 13 H -0.289 1.289 14 H -0.263 1.263 15 C 0.144 3.856 16 C -0.227 4.227 17 C 0.046 3.954 18 N -0.312 5.312 19 N -0.369 5.369 20 C 0.172 3.828 21 C -0.120 4.120 22 C -0.060 4.060 23 C -0.162 4.162 24 C 0.085 3.915 25 F -0.149 7.149 26 C -0.163 4.163 27 C -0.073 4.073 28 C 0.071 3.929 29 H 0.093 0.907 30 H 0.054 0.946 31 H 0.030 0.970 32 H 0.069 0.931 33 H 0.030 0.970 34 H 0.086 0.914 35 H 0.039 0.961 36 H 0.006 0.994 37 H -0.037 1.037 38 H 0.261 0.739 39 H 0.026 0.974 40 H 0.067 0.933 41 H 0.186 0.814 42 H 0.132 0.868 43 H 0.104 0.896 44 H 0.143 0.857 45 H 0.149 0.851 46 H 0.150 0.850 47 H 0.150 0.850 48 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.236 -15.756 13.806 21.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.315 6.315 3 C -0.007 4.007 4 C -0.072 4.072 5 N -0.252 5.252 6 C 0.080 3.920 7 C -0.549 4.549 8 H 0.081 0.919 9 C -0.196 4.196 10 N -0.578 5.578 11 Si 0.788 3.212 12 H -0.197 1.197 13 H -0.214 1.214 14 H -0.188 1.188 15 C 0.015 3.985 16 C -0.238 4.238 17 C -0.140 4.140 18 N -0.134 5.134 19 N -0.151 5.151 20 C 0.052 3.948 21 C -0.121 4.121 22 C -0.079 4.079 23 C -0.181 4.181 24 C 0.066 3.934 25 F -0.127 7.127 26 C -0.181 4.181 27 C -0.092 4.092 28 C -0.076 4.076 29 H 0.111 0.889 30 H 0.073 0.927 31 H 0.049 0.951 32 H 0.087 0.913 33 H 0.048 0.952 34 H 0.104 0.896 35 H 0.057 0.943 36 H 0.023 0.977 37 H -0.019 1.019 38 H 0.070 0.930 39 H 0.044 0.956 40 H 0.085 0.915 41 H 0.203 0.797 42 H 0.150 0.850 43 H 0.122 0.878 44 H 0.161 0.839 45 H 0.167 0.833 46 H 0.167 0.833 47 H 0.168 0.832 48 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 5.266 -17.174 14.636 23.171 hybrid contribution 0.277 1.678 -1.444 2.231 sum 5.542 -15.496 13.192 21.092 Atomic orbital electron populations 1.22831 0.80782 1.03221 1.00005 1.87951 1.20233 1.28037 1.95306 1.22584 0.93881 0.84725 0.99507 1.22120 0.93642 0.97465 0.93949 1.61990 1.17225 1.43992 1.01969 1.19434 0.93918 0.90115 0.88542 1.21401 1.46791 0.95813 0.90869 0.91862 1.25850 0.95329 0.95720 1.02722 1.70088 1.51745 1.09452 1.26481 0.85531 0.79130 0.78310 0.78230 1.19749 1.21429 1.18787 1.20062 0.87915 0.92618 0.97882 1.19980 1.14898 0.94822 0.94148 1.23877 0.99920 0.95548 0.94673 1.77156 1.25390 1.01598 1.09241 1.48674 1.56006 1.06567 1.03883 1.20819 0.95812 0.73789 1.04368 1.20026 0.95658 1.01813 0.94571 1.21085 0.98090 0.94769 0.93950 1.21337 0.91678 1.03408 1.01627 1.18036 0.82199 1.01141 0.92011 1.91478 1.48258 1.89032 1.83970 1.21339 1.00668 1.03208 0.92923 1.21180 0.90874 0.95873 1.01267 1.22524 1.00201 0.90693 0.94160 0.88872 0.92716 0.95097 0.91325 0.95157 0.89617 0.94254 0.97650 1.01916 0.92985 0.95567 0.91461 0.79687 0.85014 0.87806 0.83932 0.83313 0.83267 0.83202 0.79756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 11.01 113.37 1.25 2.03 16 2 O -0.40 -14.54 10.65 -148.98 -1.59 -16.13 16 3 C 0.07 2.45 6.01 71.98 0.43 2.88 16 4 C 0.06 2.05 5.17 86.30 0.45 2.49 16 5 N -0.53 -22.63 4.36 -905.38 -3.94 -26.57 16 6 C 0.21 10.76 4.60 85.56 0.39 11.15 16 7 C -0.51 -28.20 8.16 25.60 0.21 -27.99 16 8 H 0.06 3.41 7.61 -2.91 -0.02 3.39 16 9 C 0.00 0.07 5.45 84.66 0.46 0.53 16 10 N -0.94 -55.75 13.28 21.45 0.28 -55.46 16 11 Si 0.96 43.42 29.54 68.60 2.03 45.45 16 12 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 13 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 14 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 15 C 0.14 5.55 5.32 85.56 0.46 6.00 16 16 C -0.23 -7.41 5.28 -20.14 -0.11 -7.52 16 17 C 0.05 1.37 10.60 85.24 0.90 2.27 16 18 N -0.31 -9.10 12.41 -57.02 -0.71 -9.80 16 19 N -0.37 -9.25 3.67 -351.79 -1.29 -10.54 16 20 C 0.17 2.84 6.63 85.63 0.57 3.41 16 21 C -0.12 -2.04 5.32 -19.86 -0.11 -2.15 16 22 C -0.06 -1.03 9.70 22.26 0.22 -0.82 16 23 C -0.16 -2.81 10.03 22.31 0.22 -2.58 16 24 C 0.09 1.64 7.30 22.38 0.16 1.80 16 25 F -0.15 -3.10 17.27 44.97 0.78 -2.33 16 26 C -0.16 -2.77 10.03 22.31 0.22 -2.55 16 27 C -0.07 -1.18 9.70 22.26 0.22 -0.97 16 28 C 0.07 2.02 11.36 83.54 0.95 2.97 16 29 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.03 1.21 6.14 -2.39 -0.01 1.20 16 34 H 0.09 2.85 6.04 -2.39 -0.01 2.83 16 35 H 0.04 1.38 8.12 -2.39 -0.02 1.36 16 36 H 0.01 0.31 5.95 -2.39 -0.01 0.30 16 37 H -0.04 -2.11 8.09 -2.38 -0.02 -2.13 16 38 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 39 H 0.03 0.98 8.01 -2.38 -0.02 0.96 16 40 H 0.07 2.86 6.81 -2.39 -0.02 2.84 16 41 H 0.19 4.77 7.83 -2.91 -0.02 4.74 16 42 H 0.13 1.46 8.01 -2.39 -0.02 1.44 16 43 H 0.10 1.49 8.08 -2.39 -0.02 1.47 16 44 H 0.14 2.16 8.06 -2.91 -0.02 2.13 16 45 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 46 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 47 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 48 H 0.19 4.63 8.06 -2.91 -0.02 4.61 16 Total: -1.00 -70.55 406.05 3.41 -67.13 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 0.95 Total: 17.28 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: 6.90 Total: -9.02 kcal Atomic # 7 Polarization: -96.72 SS G_CDS: -5.66 Total: -102.38 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -1.59 Total: -16.13 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.78 Total: -2.33 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -70.55 3.41 -67.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615113786.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.526 kcal (2) G-P(sol) polarization free energy of solvation -70.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds