Wall clock time and date at job start Wed Apr 1 2020 04:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46898 * 109.47575 * 2 1 4 4 C 1.46907 * 110.99899 * 287.99658 * 3 2 1 5 5 C 1.50698 * 109.47234 * 160.36342 * 4 3 2 6 6 H 1.08002 * 119.99856 * 4.89908 * 5 4 3 7 7 C 1.37875 * 119.99858 * 184.89968 * 5 4 3 8 8 N 1.31519 * 119.99783 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 120.00131 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47357 * 89.99717 * 9 7 5 11 11 H 1.48501 * 109.46903 * 210.00146 * 9 7 5 12 12 H 1.48505 * 109.47017 * 329.99863 * 9 7 5 13 13 C 1.46896 * 111.00382 * 164.04558 * 3 2 1 14 14 C 1.53007 * 109.46745 * 293.94965 * 13 3 2 15 15 H 1.08998 * 109.46797 * 60.00061 * 14 13 3 16 16 O 1.42896 * 109.47099 * 300.00011 * 14 13 3 17 17 C 1.53008 * 109.46941 * 179.97438 * 14 13 3 18 18 O 1.42896 * 109.46824 * 185.00013 * 17 14 13 19 19 C 1.35872 * 116.99846 * 180.02562 * 18 17 14 20 20 C 1.38831 * 119.93990 * 180.02562 * 19 18 17 21 21 C 1.37908 * 120.06173 * 179.97438 * 20 19 18 22 22 C 1.39345 * 119.93808 * 359.97438 * 21 20 19 23 23 C 1.48433 * 120.05855 * 179.97438 * 22 21 20 24 24 N 1.34053 * 126.68093 * 0.02645 * 23 22 21 25 25 N 1.28984 * 107.27140 * 179.97438 * 24 23 22 26 26 N 1.28729 * 108.94473 * 0.02562 * 25 24 23 27 27 H 0.96998 * 125.33907 * 179.97438 * 26 25 24 28 28 N 1.28869 * 109.32177 * 359.97438 * 26 25 24 29 29 C 1.39344 * 119.87712 * 0.25588 * 22 21 20 30 30 C 1.37915 * 119.93701 * 359.50746 * 29 22 21 31 31 H 1.09005 * 109.46514 * 59.45967 * 1 2 3 32 32 H 1.08991 * 109.47295 * 179.46052 * 1 2 3 33 33 H 1.09004 * 109.47189 * 299.46858 * 1 2 3 34 34 H 1.09000 * 109.47111 * 239.99177 * 2 1 3 35 35 H 1.09007 * 109.46853 * 119.99845 * 2 1 3 36 36 H 1.08993 * 109.46972 * 280.36683 * 4 3 2 37 37 H 1.09007 * 109.46803 * 40.36113 * 4 3 2 38 38 H 0.97001 * 119.99684 * 179.97438 * 8 7 5 39 39 H 1.08998 * 109.47423 * 173.95410 * 13 3 2 40 40 H 1.09003 * 109.47538 * 53.94828 * 13 3 2 41 41 H 0.96701 * 114.00072 * 299.99873 * 16 14 13 42 42 H 1.08996 * 109.46524 * 65.00085 * 17 14 13 43 43 H 1.09001 * 109.46785 * 305.00311 * 17 14 13 44 44 H 1.08002 * 119.96271 * 0.02562 * 20 19 18 45 45 H 1.07995 * 120.03317 * 180.02562 * 21 20 19 46 46 H 1.07997 * 120.02661 * 179.72775 * 29 22 21 47 47 H 1.07994 * 119.96745 * 180.23236 * 30 29 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.7958 2.0225 -1.3044 5 6 1.8473 3.5204 -1.1469 6 1 2.1063 3.9544 -0.1924 7 6 1.5637 4.3367 -2.2212 8 7 1.6082 5.6439 -2.0836 9 14 1.1150 3.5860 -3.8718 10 1 -0.3559 3.3958 -3.9457 11 1 1.5524 4.4930 -4.9633 12 1 1.7920 2.2724 -4.0186 13 6 3.4384 1.4417 0.3769 14 6 3.5972 0.9996 1.8331 15 1 3.2322 -0.0214 1.9446 16 8 2.8441 1.8699 2.6800 17 6 5.0749 1.0581 2.2256 18 8 5.2382 0.5356 3.5456 19 6 6.4998 0.5162 4.0496 20 6 6.7283 0.0209 5.3263 21 6 8.0079 -0.0005 5.8401 22 6 9.0720 0.4751 5.0765 23 6 10.4503 0.4538 5.6271 24 7 10.8230 0.0090 6.8355 25 7 12.1005 0.1639 6.9233 26 7 12.5348 0.6830 5.8283 27 1 13.4609 0.9005 5.6392 28 7 11.5460 0.8685 5.0229 29 6 8.8391 0.9761 3.7973 30 6 7.5580 0.9906 3.2865 31 1 -0.3632 0.5222 -0.8852 32 1 -0.3633 -1.0275 -0.0097 33 1 -0.3634 0.5056 0.8947 34 1 1.8933 -0.5140 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 2.5699 1.7037 -2.0023 37 1 0.8181 1.7309 -1.6882 38 1 1.4090 6.2182 -2.8395 39 1 3.8034 2.4627 0.2654 40 1 4.0129 0.7778 -0.2691 41 1 3.1152 2.7969 2.6321 42 1 5.4170 2.0926 2.1994 43 1 5.6608 0.4637 1.5244 44 1 5.9033 -0.3488 5.9171 45 1 8.1852 -0.3863 6.8331 46 1 9.6614 1.3494 3.2050 47 1 7.3775 1.3753 2.2937 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821207478.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:28 Heat of formation + Delta-G solvation = 45.457127 kcal Electronic energy + Delta-G solvation = -29107.079571 eV Core-core repulsion = 24906.663617 eV Total energy + Delta-G solvation = -4200.415954 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -45.43726 -41.24632 -39.62633 -38.51169 -37.00977 -35.32385 -34.66632 -34.37271 -32.43486 -32.05586 -31.48770 -30.66624 -29.05638 -26.35873 -25.78375 -25.01494 -24.13332 -23.72609 -22.62026 -22.29621 -21.25661 -20.17221 -19.22696 -18.95646 -18.12360 -17.82810 -17.49983 -17.38645 -16.76571 -16.42113 -15.96968 -15.88030 -15.59968 -15.46098 -15.00656 -14.90827 -14.69272 -14.47514 -14.39576 -14.04203 -13.81053 -13.67345 -13.47186 -13.22529 -12.95616 -12.94241 -12.65341 -12.47061 -12.44121 -12.35274 -12.29159 -12.20126 -12.01026 -11.88447 -11.77235 -11.46742 -11.44725 -11.24141 -10.88854 -10.71982 -10.07325 -9.12399 -8.91174 -8.24647 -6.26084 -0.25853 0.19332 0.32672 1.31343 1.36021 1.36542 1.44390 1.46612 2.01183 2.36147 2.70203 2.76669 3.07305 3.17567 3.21182 3.59759 3.76003 3.84852 3.90204 4.02987 4.09312 4.18965 4.24347 4.28437 4.33843 4.37430 4.43800 4.50979 4.53585 4.64179 4.70664 4.74352 4.88637 4.93925 5.01501 5.06360 5.14235 5.18565 5.21428 5.28984 5.40689 5.41229 5.62541 5.62888 5.64266 6.04875 6.33495 6.45121 6.69398 6.79605 6.90185 7.13406 7.36956 8.91672 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017695 B = 0.001794 C = 0.001687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.008773 B =15601.340619 C =16598.203664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.044 3.956 3 N -0.533 5.533 4 C 0.171 3.829 5 C -0.506 4.506 6 H 0.042 0.958 7 C 0.008 3.992 8 N -0.947 5.947 9 Si 0.941 3.059 10 H -0.269 1.269 11 H -0.284 1.284 12 H -0.251 1.251 13 C 0.037 3.963 14 C 0.125 3.875 15 H 0.106 0.894 16 O -0.558 6.558 17 C 0.030 3.970 18 O -0.313 6.313 19 C 0.143 3.857 20 C -0.160 4.160 21 C -0.034 4.034 22 C -0.077 4.077 23 C 0.218 3.782 24 N -0.296 5.296 25 N -0.058 5.058 26 N -0.202 5.202 27 H 0.494 0.506 28 N -0.301 5.301 29 C -0.036 4.036 30 C -0.215 4.215 31 H 0.038 0.962 32 H 0.079 0.921 33 H 0.050 0.950 34 H 0.030 0.970 35 H 0.084 0.916 36 H -0.012 1.012 37 H 0.028 0.972 38 H 0.265 0.735 39 H 0.069 0.931 40 H 0.048 0.952 41 H 0.380 0.620 42 H 0.078 0.922 43 H 0.092 0.908 44 H 0.149 0.851 45 H 0.151 0.849 46 H 0.147 0.853 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.704 -14.477 12.643 27.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.083 4.083 3 N -0.258 5.258 4 C 0.044 3.956 5 C -0.545 4.545 6 H 0.060 0.940 7 C -0.190 4.190 8 N -0.588 5.588 9 Si 0.765 3.235 10 H -0.195 1.195 11 H -0.210 1.210 12 H -0.175 1.175 13 C -0.092 4.092 14 C 0.065 3.935 15 H 0.123 0.877 16 O -0.364 6.364 17 C -0.046 4.046 18 O -0.226 6.226 19 C 0.096 3.904 20 C -0.178 4.178 21 C -0.054 4.054 22 C -0.080 4.080 23 C -0.061 4.061 24 N -0.168 5.168 25 N -0.053 5.053 26 N -0.053 5.053 27 H 0.353 0.647 28 N -0.154 5.154 29 C -0.056 4.056 30 C -0.234 4.234 31 H 0.057 0.943 32 H 0.097 0.903 33 H 0.069 0.931 34 H 0.049 0.951 35 H 0.102 0.898 36 H 0.005 0.995 37 H 0.046 0.954 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.066 0.934 41 H 0.228 0.772 42 H 0.096 0.904 43 H 0.110 0.890 44 H 0.167 0.833 45 H 0.169 0.831 46 H 0.164 0.836 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 19.397 -14.807 13.602 27.937 hybrid contribution 0.843 0.813 -2.208 2.499 sum 20.240 -13.994 11.394 27.116 Atomic orbital electron populations 1.21737 0.95018 1.01731 1.01463 1.22216 0.96671 0.88919 1.00538 1.61722 1.17009 1.16465 1.30592 1.19974 0.95330 0.93510 0.86801 1.21259 1.45500 0.90669 0.97027 0.93972 1.25787 0.95373 0.95041 1.02755 1.70045 1.51579 1.04484 1.32736 0.85813 0.79289 0.79168 0.79244 1.19464 1.20960 1.17502 1.22546 0.89602 1.01786 0.95262 1.21854 0.88141 0.95458 0.88052 0.87652 1.86551 1.62280 1.22131 1.65399 1.23662 0.98493 1.00310 0.82098 1.86124 1.25398 1.78442 1.32622 1.19496 0.83742 0.93765 0.93441 1.20546 0.97998 1.05237 0.94038 1.21063 0.90051 0.94568 0.99723 1.17244 0.86294 1.08570 0.95927 1.23754 0.94720 0.98587 0.89045 1.76056 1.02429 1.20371 1.17957 1.78840 1.05532 1.11942 1.08940 1.47773 1.12711 1.37723 1.07065 0.64740 1.74905 0.95788 1.23236 1.21470 1.21062 0.97012 0.94266 0.93255 1.21391 0.92362 1.07340 1.02298 0.94266 0.90258 0.93080 0.95139 0.89771 0.99473 0.95355 0.92627 0.91261 0.93386 0.77158 0.90395 0.88968 0.83347 0.83100 0.83571 0.83342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.29 9.99 71.98 0.72 -3.57 16 2 C 0.04 1.37 5.55 86.30 0.48 1.85 16 3 N -0.53 -20.48 4.25 -900.77 -3.83 -24.31 16 4 C 0.17 7.80 3.65 85.56 0.31 8.12 16 5 C -0.51 -28.12 9.17 25.60 0.23 -27.89 16 6 H 0.04 2.60 7.89 -2.91 -0.02 2.57 16 7 C 0.01 0.43 5.47 84.65 0.46 0.89 16 8 N -0.95 -58.01 13.96 21.45 0.30 -57.71 16 9 Si 0.94 43.11 27.37 68.60 1.88 44.99 16 10 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.25 -10.68 6.69 99.48 0.67 -10.02 16 13 C 0.04 1.17 4.45 86.31 0.38 1.56 16 14 C 0.12 3.34 3.16 30.60 0.10 3.43 16 15 H 0.11 2.74 6.28 -2.39 -0.01 2.72 16 16 O -0.56 -17.80 13.17 -144.37 -1.90 -19.70 16 17 C 0.03 0.64 4.37 71.98 0.31 0.95 16 18 O -0.31 -7.40 10.10 -87.50 -0.88 -8.28 16 19 C 0.14 2.98 6.69 22.55 0.15 3.14 16 20 C -0.16 -3.02 9.97 22.33 0.22 -2.80 16 21 C -0.03 -0.61 9.70 22.46 0.22 -0.39 16 22 C -0.08 -1.45 5.88 -20.03 -0.12 -1.57 16 23 C 0.22 4.25 7.93 137.37 1.09 5.34 16 24 N -0.30 -6.08 12.23 -52.19 -0.64 -6.72 16 25 N -0.06 -0.95 13.47 37.02 0.50 -0.45 16 26 N -0.20 -2.20 7.90 37.02 0.29 -1.90 16 27 H 0.49 0.39 8.96 -347.54 -3.12 -2.73 16 28 N -0.30 -4.85 12.08 -52.14 -0.63 -5.48 16 29 C -0.04 -0.63 9.69 22.46 0.22 -0.41 16 30 C -0.22 -3.93 9.02 22.33 0.20 -3.73 16 31 H 0.04 1.30 6.52 -2.38 -0.02 1.29 16 32 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 34 H 0.03 0.89 8.05 -2.39 -0.02 0.87 16 35 H 0.08 2.27 5.94 -2.38 -0.01 2.25 16 36 H -0.01 -0.56 7.40 -2.39 -0.02 -0.58 16 37 H 0.03 1.30 5.40 -2.38 -0.01 1.29 16 38 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 39 H 0.07 2.52 7.32 -2.39 -0.02 2.50 16 40 H 0.05 1.36 8.12 -2.39 -0.02 1.34 16 41 H 0.38 10.93 9.05 -74.06 -0.67 10.26 16 42 H 0.08 1.56 7.65 -2.39 -0.02 1.54 16 43 H 0.09 1.57 7.66 -2.39 -0.02 1.55 16 44 H 0.15 2.46 8.06 -2.91 -0.02 2.43 16 45 H 0.15 2.33 7.88 -2.91 -0.02 2.30 16 46 H 0.15 2.14 7.88 -2.91 -0.02 2.12 16 47 H 0.15 2.28 6.28 -2.91 -0.02 2.27 16 Total: -1.00 -73.44 391.03 -2.72 -76.16 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: -2.79 Total: 18.51 kcal Atomic # 6 Polarization: -20.08 SS G_CDS: 4.99 Total: -15.09 kcal Atomic # 7 Polarization: -92.57 SS G_CDS: -4.00 Total: -96.57 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -2.78 Total: -27.99 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 1.88 Total: 44.99 kcal Total: -73.44 -2.72 -76.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821207478.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.616 kcal (2) G-P(sol) polarization free energy of solvation -73.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds