Wall clock time and date at job start Wed Apr 1 2020 06:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 114.00079 * 2 1 4 4 C 1.53007 * 109.47297 * 179.97438 * 3 2 1 5 5 N 1.46906 * 109.46789 * 62.67596 * 4 3 2 6 6 C 1.46893 * 110.99885 * 72.14359 * 5 4 3 7 7 C 1.50706 * 109.47209 * 66.69247 * 6 5 4 8 8 H 1.07992 * 120.00037 * 4.56925 * 7 6 5 9 9 C 1.37873 * 119.99670 * 184.57160 * 7 6 5 10 10 N 1.31513 * 120.00718 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99792 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47162 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.46982 * 119.99570 * 11 9 7 14 14 H 1.48496 * 109.47656 * 240.00000 * 11 9 7 15 15 C 1.46900 * 110.99531 * 196.09749 * 5 4 3 16 16 C 1.53002 * 109.47115 * 163.08532 * 15 5 4 17 17 O 1.42900 * 109.47196 * 65.56432 * 16 15 5 18 18 C 1.35872 * 116.99808 * 180.02562 * 17 16 15 19 19 C 1.38819 * 119.93777 * 359.72640 * 18 17 16 20 20 C 1.37917 * 120.06116 * 179.76159 * 19 18 17 21 21 C 1.39345 * 119.93639 * 0.51661 * 20 19 18 22 22 C 1.48430 * 120.06125 * 179.76519 * 21 20 19 23 23 N 1.34057 * 126.67510 * 179.97438 * 22 21 20 24 24 N 1.28985 * 107.26958 * 179.97438 * 23 22 21 25 25 N 1.28726 * 108.94597 * 359.97438 * 24 23 22 26 26 H 0.97001 * 125.34199 * 179.97438 * 25 24 23 27 27 N 1.28876 * 109.32130 * 359.76932 * 25 24 23 28 28 C 1.39343 * 119.87491 * 359.73236 * 21 20 19 29 29 C 1.37916 * 119.94073 * 0.02562 * 28 21 20 30 30 H 1.08994 * 109.46816 * 60.00360 * 1 2 3 31 31 H 1.09005 * 109.47118 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47330 * 299.99871 * 1 2 3 33 33 H 1.08993 * 109.47016 * 59.99883 * 3 2 1 34 34 H 1.08996 * 109.47046 * 299.99397 * 3 2 1 35 35 H 1.09003 * 109.46676 * 302.67784 * 4 3 2 36 36 H 1.08992 * 109.47232 * 182.67677 * 4 3 2 37 37 H 1.08999 * 109.46934 * 186.68639 * 6 5 4 38 38 H 1.09004 * 109.47445 * 306.68943 * 6 5 4 39 39 H 0.97001 * 120.00355 * 179.97438 * 10 9 7 40 40 H 1.08997 * 109.47738 * 43.07915 * 15 5 4 41 41 H 1.09004 * 109.47107 * 283.07894 * 15 5 4 42 42 H 1.09004 * 109.46473 * 305.56510 * 16 15 5 43 43 H 1.09000 * 109.46964 * 185.56708 * 16 15 5 44 44 H 1.07999 * 119.97492 * 0.02562 * 19 18 17 45 45 H 1.08003 * 120.03462 * 180.25112 * 20 19 18 46 46 H 1.08004 * 120.02685 * 180.02562 * 28 21 20 47 47 H 1.07999 * 119.96950 * 179.97438 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9739 0.5120 -1.2296 6 6 3.8225 1.3940 -2.3944 7 6 4.7792 2.5524 -2.2751 8 1 5.4850 2.5879 -1.4585 9 6 4.7532 3.5668 -3.2085 10 7 3.8939 3.5235 -4.2032 11 14 5.9385 5.0030 -3.0602 12 1 6.7963 4.8152 -1.8627 13 1 6.7914 5.0682 -4.2742 14 1 5.1706 6.2669 -2.9263 15 6 5.3585 0.0372 -1.1051 16 6 5.6420 -0.9996 -2.1940 17 8 5.5836 -0.3716 -3.4763 18 6 5.8133 -1.1589 -4.5597 19 6 6.0947 -2.5074 -4.3889 20 6 6.3235 -3.3099 -5.4870 21 6 6.2824 -2.7636 -6.7682 22 6 6.5332 -3.6236 -7.9517 23 7 6.5263 -3.2400 -9.2361 24 7 6.7892 -4.2826 -9.9486 25 7 6.9586 -5.2911 -9.1668 26 1 7.1668 -6.1942 -9.4531 27 7 6.8124 -4.9119 -7.9438 28 6 6.0047 -1.4085 -6.9363 29 6 5.7718 -0.6117 -5.8349 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.6886 1.8463 0.8899 34 1 1.6887 1.8463 -0.8900 35 1 3.8535 0.6030 0.8659 36 1 3.9787 2.1792 0.0486 37 1 4.0407 0.8349 -3.3043 38 1 2.8001 1.7699 -2.4352 39 1 3.8754 4.2374 -4.8596 40 1 5.4999 -0.4177 -0.1247 41 1 6.0425 0.8784 -1.2175 42 1 4.8959 -1.7927 -2.1435 43 1 6.6344 -1.4239 -2.0421 44 1 6.1305 -2.9296 -3.3955 45 1 6.5384 -4.3599 -5.3538 46 1 5.9718 -0.9825 -7.9283 47 1 5.5570 0.4387 -5.9646 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821689162.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:28:55 Heat of formation + Delta-G solvation = 58.238223 kcal Electronic energy + Delta-G solvation = -30146.696234 eV Core-core repulsion = 25946.834509 eV Total energy + Delta-G solvation = -4199.861725 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -45.40547 -41.06444 -39.37166 -38.54337 -37.42331 -35.29985 -34.49099 -34.29770 -32.22575 -31.79338 -30.50261 -29.86486 -27.85483 -26.74437 -25.74403 -25.40836 -24.84315 -23.89553 -22.66716 -22.20038 -21.18920 -20.11183 -19.16819 -18.43579 -18.09102 -17.48216 -17.38334 -17.23200 -16.68873 -16.63872 -16.38389 -15.80823 -15.55550 -15.25436 -15.17069 -14.90572 -14.60434 -14.36747 -14.06977 -13.87209 -13.65587 -13.38536 -13.30845 -13.13951 -12.88296 -12.74036 -12.71551 -12.41858 -12.39896 -12.31683 -12.28243 -12.07523 -11.99516 -11.85302 -11.70318 -11.39551 -11.38982 -11.16438 -10.45773 -10.37639 -10.00106 -8.96537 -8.83664 -8.00357 -6.15590 -0.18834 0.23372 0.40333 1.37302 1.37764 1.40737 1.47838 1.49360 2.44326 2.46664 2.74198 2.85446 3.06382 3.21735 3.25368 3.41644 3.89846 3.99039 4.22035 4.24813 4.29373 4.33747 4.37817 4.47234 4.48603 4.49012 4.57584 4.61759 4.64883 4.65877 4.70261 4.84105 4.88529 5.05238 5.06703 5.08649 5.18434 5.29292 5.38430 5.44165 5.47040 5.63313 5.67281 5.77181 6.02285 6.20247 6.35028 6.47015 6.63217 6.74713 7.05595 7.16664 7.52309 9.01500 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010197 B = 0.002749 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2745.194663 B =10182.217194 C =11850.937163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.396 6.396 3 C 0.076 3.924 4 C 0.060 3.940 5 N -0.534 5.534 6 C 0.200 3.800 7 C -0.533 4.533 8 H 0.055 0.945 9 C 0.016 3.984 10 N -0.924 5.924 11 Si 0.942 3.058 12 H -0.266 1.266 13 H -0.286 1.286 14 H -0.283 1.283 15 C 0.053 3.947 16 C 0.065 3.935 17 O -0.305 6.305 18 C 0.147 3.853 19 C -0.211 4.211 20 C -0.028 4.028 21 C -0.083 4.083 22 C 0.224 3.776 23 N -0.302 5.302 24 N -0.058 5.058 25 N -0.200 5.200 26 H 0.494 0.506 27 N -0.297 5.297 28 C -0.034 4.034 29 C -0.174 4.174 30 H 0.028 0.972 31 H 0.098 0.902 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.023 0.977 35 H 0.086 0.914 36 H 0.043 0.957 37 H 0.034 0.966 38 H -0.009 1.009 39 H 0.258 0.742 40 H 0.107 0.893 41 H 0.036 0.964 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.159 0.841 45 H 0.157 0.843 46 H 0.140 0.860 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.978 -18.086 0.610 18.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.315 6.315 3 C -0.001 4.001 4 C -0.068 4.068 5 N -0.258 5.258 6 C 0.074 3.926 7 C -0.572 4.572 8 H 0.073 0.927 9 C -0.183 4.183 10 N -0.565 5.565 11 Si 0.769 3.231 12 H -0.190 1.190 13 H -0.212 1.212 14 H -0.209 1.209 15 C -0.075 4.075 16 C -0.009 4.009 17 O -0.217 6.217 18 C 0.099 3.901 19 C -0.230 4.230 20 C -0.048 4.048 21 C -0.087 4.087 22 C -0.055 4.055 23 N -0.175 5.175 24 N -0.053 5.053 25 N -0.051 5.051 26 H 0.353 0.647 27 N -0.149 5.149 28 C -0.054 4.054 29 C -0.193 4.193 30 H 0.047 0.953 31 H 0.116 0.884 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.042 0.958 35 H 0.104 0.896 36 H 0.061 0.939 37 H 0.052 0.948 38 H 0.009 0.991 39 H 0.067 0.933 40 H 0.125 0.875 41 H 0.055 0.945 42 H 0.091 0.909 43 H 0.106 0.894 44 H 0.176 0.824 45 H 0.175 0.825 46 H 0.158 0.842 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 3.753 -18.499 -0.239 18.878 hybrid contribution 0.682 1.789 -0.033 1.915 sum 4.435 -16.711 -0.273 17.291 Atomic orbital electron populations 1.22850 0.80784 1.03404 0.99942 1.87904 1.20227 1.28008 1.95327 1.22472 0.94044 0.84441 0.99169 1.22018 0.93383 0.98160 0.93235 1.62503 1.20565 1.39133 1.03550 1.19582 0.93787 0.89616 0.89635 1.21915 1.18794 1.06577 1.09900 0.92675 1.25610 0.96951 1.00491 0.95247 1.70081 1.37637 1.34041 1.14705 0.85758 0.79445 0.79988 0.77945 1.19045 1.21227 1.20946 1.22208 0.90440 0.97352 0.97529 1.23063 1.01642 0.96168 0.80065 1.86571 1.83592 1.37288 1.14255 1.19641 0.91680 0.90685 0.88056 1.21381 1.08480 0.91846 1.01263 1.21091 0.93721 1.00580 0.89455 1.17141 1.11066 0.91608 0.88854 1.23626 1.00584 0.88518 0.92768 1.76092 1.19095 1.20133 1.02152 1.78825 1.14307 0.91022 1.21187 1.47752 1.42635 1.14168 1.00574 0.64673 1.74873 1.21889 1.13768 1.04407 1.20911 0.94122 0.91809 0.98605 1.20437 1.07582 1.00855 0.90417 0.95285 0.88368 0.92908 0.91672 0.95846 0.89554 0.93889 0.94806 0.99060 0.93262 0.87467 0.94528 0.90922 0.89389 0.82357 0.82529 0.84185 0.86743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 11.01 113.37 1.25 1.94 16 2 O -0.40 -13.66 10.61 -148.98 -1.58 -15.24 16 3 C 0.08 2.68 6.07 71.98 0.44 3.11 16 4 C 0.06 2.21 5.25 86.30 0.45 2.66 16 5 N -0.53 -21.97 4.53 -900.77 -4.08 -26.05 16 6 C 0.20 10.31 4.58 85.56 0.39 10.70 16 7 C -0.53 -28.71 7.27 25.60 0.19 -28.53 16 8 H 0.06 2.91 6.00 -2.91 -0.02 2.89 16 9 C 0.02 0.88 5.46 84.65 0.46 1.34 16 10 N -0.92 -55.24 13.29 21.45 0.28 -54.96 16 11 Si 0.94 44.28 29.54 68.60 2.03 46.31 16 12 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 13 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 14 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 15 C 0.05 1.83 5.35 86.30 0.46 2.29 16 16 C 0.07 2.04 5.05 71.98 0.36 2.41 16 17 O -0.30 -12.19 7.11 -92.11 -0.65 -12.84 16 18 C 0.15 5.15 6.69 22.55 0.15 5.30 16 19 C -0.21 -5.62 9.02 22.33 0.20 -5.42 16 20 C -0.03 -0.69 9.69 22.46 0.22 -0.47 16 21 C -0.08 -2.30 5.88 -20.03 -0.12 -2.41 16 22 C 0.22 5.84 7.93 137.36 1.09 6.93 16 23 N -0.30 -8.31 12.23 -52.19 -0.64 -8.95 16 24 N -0.06 -1.27 13.47 37.02 0.50 -0.77 16 25 N -0.20 -2.99 7.90 37.02 0.29 -2.70 16 26 H 0.49 1.97 8.96 -347.54 -3.12 -1.14 16 27 N -0.30 -6.08 12.08 -52.14 -0.63 -6.71 16 28 C -0.03 -1.07 9.70 22.46 0.22 -0.85 16 29 C -0.17 -6.32 9.97 22.33 0.22 -6.09 16 30 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.10 2.13 8.14 -2.38 -0.02 2.11 16 32 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.02 0.98 6.57 -2.39 -0.02 0.96 16 35 H 0.09 2.65 7.71 -2.39 -0.02 2.63 16 36 H 0.04 1.72 6.76 -2.39 -0.02 1.71 16 37 H 0.03 1.92 5.48 -2.39 -0.01 1.91 16 38 H -0.01 -0.50 6.45 -2.39 -0.02 -0.52 16 39 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 40 H 0.11 2.90 7.70 -2.39 -0.02 2.88 16 41 H 0.04 1.46 5.87 -2.39 -0.01 1.45 16 42 H 0.07 2.13 7.67 -2.38 -0.02 2.11 16 43 H 0.09 2.12 7.64 -2.39 -0.02 2.10 16 44 H 0.16 3.32 6.28 -2.91 -0.02 3.30 16 45 H 0.16 2.91 7.88 -2.91 -0.02 2.89 16 46 H 0.14 4.12 7.88 -2.91 -0.02 4.09 16 47 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 Total: -1.00 -72.98 388.78 -0.59 -73.57 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -2.10 Total: 15.43 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: 5.99 Total: -7.09 kcal Atomic # 7 Polarization: -95.87 SS G_CDS: -4.27 Total: -100.14 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -2.24 Total: -28.08 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -72.98 -0.59 -73.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821689162.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.809 kcal (2) G-P(sol) polarization free energy of solvation -72.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds