Wall clock time and date at job start Wed Apr 1 2020 06:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42893 * 114.00133 * 2 1 4 4 C 1.53005 * 109.47310 * 179.97438 * 3 2 1 5 5 N 1.46905 * 109.46579 * 63.65521 * 4 3 2 6 6 C 1.46897 * 110.99794 * 200.25254 * 5 4 3 7 7 C 1.50700 * 109.46855 * 66.04911 * 6 5 4 8 8 H 1.08000 * 120.00225 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99987 * 179.97438 * 7 6 5 10 10 N 1.31508 * 120.00039 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99857 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47062 * 89.99911 * 11 9 7 13 13 H 1.48501 * 109.46951 * 209.99900 * 11 9 7 14 14 H 1.48496 * 109.47375 * 329.99747 * 11 9 7 15 15 C 1.46901 * 110.99560 * 76.30544 * 5 4 3 16 16 C 1.53004 * 109.46758 * 200.49733 * 15 5 4 17 17 O 1.42895 * 109.47105 * 64.35860 * 16 15 5 18 18 C 1.35910 * 116.99687 * 176.12032 * 17 16 15 19 19 C 1.38820 * 120.00022 * 0.02562 * 18 17 16 20 20 C 1.38200 * 120.18250 * 179.97438 * 19 18 17 21 21 C 1.38077 * 120.17672 * 0.02562 * 20 19 18 22 22 C 1.39297 * 119.99199 * 359.97438 * 21 20 19 23 23 C 1.48476 * 120.08829 * 180.02562 * 22 21 20 24 24 N 1.34044 * 126.67010 * 179.68824 * 23 22 21 25 25 N 1.28983 * 107.26577 * 179.86930 * 24 23 22 26 26 N 1.28734 * 108.94540 * 0.40208 * 25 24 23 27 27 H 0.96998 * 125.34429 * 179.76841 * 26 25 24 28 28 N 1.28870 * 109.31175 * 359.73927 * 26 25 24 29 29 C 1.38509 * 119.99633 * 179.97438 * 18 17 16 30 30 H 1.08997 * 109.47194 * 300.00111 * 1 2 3 31 31 H 1.09001 * 109.46956 * 60.00245 * 1 2 3 32 32 H 1.09001 * 109.47391 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47214 * 59.99797 * 3 2 1 34 34 H 1.09000 * 109.47247 * 300.00148 * 3 2 1 35 35 H 1.08994 * 109.46974 * 303.66130 * 4 3 2 36 36 H 1.08999 * 109.47159 * 183.65585 * 4 3 2 37 37 H 1.08991 * 109.47185 * 186.04610 * 6 5 4 38 38 H 1.09001 * 109.47427 * 306.05495 * 6 5 4 39 39 H 0.97001 * 120.00529 * 179.97438 * 10 9 7 40 40 H 1.08996 * 109.47404 * 80.49928 * 15 5 4 41 41 H 1.09002 * 109.47148 * 320.49222 * 15 5 4 42 42 H 1.09004 * 109.46917 * 304.35825 * 16 15 5 43 43 H 1.08998 * 109.46970 * 184.36145 * 16 15 5 44 44 H 1.08006 * 119.90727 * 359.97438 * 19 18 17 45 45 H 1.08008 * 119.90785 * 179.97438 * 20 19 18 46 46 H 1.08001 * 120.00001 * 180.27654 * 21 20 19 47 47 H 1.08003 * 120.09138 * 0.02562 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9755 0.5330 -1.2403 6 6 5.3237 -0.0306 -1.0895 7 6 5.2887 -1.1552 -0.0869 8 1 4.3580 -1.4246 0.3901 9 6 6.4447 -1.8409 0.2205 10 7 7.5778 -1.5139 -0.3615 11 14 6.4012 -3.2354 1.4627 12 1 6.1241 -4.5146 0.7612 13 1 7.7126 -3.3237 2.1538 14 1 5.3324 -2.9763 2.4605 15 6 3.9188 1.4660 -2.3735 16 6 3.8772 0.6759 -3.6830 17 8 2.6690 -0.0848 -3.7422 18 6 2.4360 -0.7849 -4.8836 19 6 3.3529 -0.7400 -5.9248 20 6 3.1200 -1.4508 -7.0869 21 6 1.9736 -2.2090 -7.2187 22 6 1.0486 -2.2593 -6.1785 23 6 -0.1846 -3.0745 -6.3178 24 7 -1.1544 -3.2214 -5.4042 25 7 -2.0446 -4.0037 -5.9134 26 7 -1.6676 -4.3537 -7.0936 27 1 -2.1587 -4.9422 -7.6880 28 7 -0.5358 -3.7988 -7.3614 29 6 1.2840 -1.5439 -5.0073 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8463 -0.8900 35 1 3.8524 0.5882 0.8562 36 1 3.9787 2.1783 0.0662 37 1 5.6679 -0.4116 -2.0509 38 1 6.0051 0.7455 -0.7411 39 1 8.3912 -1.9960 -0.1450 40 1 4.8017 2.1050 -2.3626 41 1 3.0233 2.0822 -2.2923 42 1 4.7332 0.0026 -3.7284 43 1 3.9132 1.3667 -4.5254 44 1 4.2509 -0.1479 -5.8264 45 1 3.8363 -1.4123 -7.8944 46 1 1.7966 -2.7670 -8.1264 47 1 0.5698 -1.5802 -4.1980 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821689272.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:29:00 Heat of formation + Delta-G solvation = 81.027609 kcal Electronic energy + Delta-G solvation = -30258.973666 eV Core-core repulsion = 26060.100164 eV Total energy + Delta-G solvation = -4198.873503 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.58767 -39.92936 -37.96409 -37.27486 -35.96614 -34.49838 -33.54595 -32.53803 -31.10225 -30.37073 -29.44332 -28.56848 -26.31280 -25.43429 -24.83424 -24.59860 -22.79034 -22.23163 -22.18166 -21.13324 -19.71125 -19.25717 -17.95882 -17.27486 -16.54510 -16.13261 -15.80859 -15.67627 -15.58547 -15.37021 -14.97707 -14.63248 -14.42584 -14.27512 -13.73957 -13.59527 -13.49402 -13.10138 -12.91381 -12.66245 -12.40471 -12.01602 -11.86084 -11.77054 -11.64538 -11.56400 -11.47854 -11.25030 -11.15653 -11.02987 -10.99691 -10.71731 -10.60915 -10.48976 -10.37015 -10.05208 -9.62509 -9.16485 -9.00746 -8.78412 -8.36180 -8.01595 -7.14950 -5.95905 -3.94815 0.63138 1.08700 1.51726 2.06606 2.31113 3.34654 3.39470 3.45002 3.50631 3.74033 3.85930 4.13483 4.38748 4.50521 4.81211 4.88268 4.99360 5.14062 5.28091 5.31302 5.39772 5.40810 5.44283 5.53341 5.57777 5.59777 5.66452 5.71299 5.82080 5.87496 5.92525 5.97561 6.06494 6.08163 6.17271 6.21391 6.26084 6.33952 6.44923 6.47624 6.72499 6.75922 7.26776 7.33387 7.72893 7.78613 7.93210 8.01027 8.15100 8.25240 8.62476 9.15496 9.69206 11.15226 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009090 B = 0.002878 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3079.590780 B = 9727.138967 C =10052.050205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.359 6.359 3 C 0.072 3.928 4 C 0.061 3.939 5 N -0.518 5.518 6 C 0.192 3.808 7 C -0.499 4.499 8 H 0.069 0.931 9 C 0.054 3.946 10 N -0.903 5.903 11 Si 0.896 3.104 12 H -0.281 1.281 13 H -0.289 1.289 14 H -0.273 1.273 15 C 0.052 3.948 16 C 0.068 3.932 17 O -0.282 6.282 18 C 0.145 3.855 19 C -0.192 4.192 20 C -0.082 4.082 21 C -0.129 4.129 22 C 0.013 3.987 23 C 0.227 3.773 24 N -0.262 5.262 25 N -0.052 5.052 26 N -0.231 5.231 27 H 0.474 0.526 28 N -0.295 5.295 29 C -0.111 4.111 30 H 0.028 0.972 31 H 0.034 0.966 32 H 0.080 0.920 33 H 0.037 0.963 34 H 0.039 0.961 35 H 0.096 0.904 36 H 0.034 0.966 37 H 0.029 0.971 38 H -0.011 1.011 39 H 0.259 0.741 40 H 0.048 0.952 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.055 0.945 44 H 0.133 0.867 45 H 0.129 0.871 46 H 0.129 0.871 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.991 2.505 -14.647 21.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.277 6.277 3 C -0.006 4.006 4 C -0.067 4.067 5 N -0.243 5.243 6 C 0.068 3.932 7 C -0.537 4.537 8 H 0.087 0.913 9 C -0.147 4.147 10 N -0.543 5.543 11 Si 0.724 3.276 12 H -0.207 1.207 13 H -0.215 1.215 14 H -0.198 1.198 15 C -0.076 4.076 16 C -0.007 4.007 17 O -0.194 6.194 18 C 0.098 3.902 19 C -0.211 4.211 20 C -0.101 4.101 21 C -0.149 4.149 22 C 0.009 3.991 23 C -0.052 4.052 24 N -0.135 5.135 25 N -0.047 5.047 26 N -0.077 5.077 27 H 0.328 0.672 28 N -0.147 5.147 29 C -0.132 4.132 30 H 0.047 0.953 31 H 0.052 0.948 32 H 0.098 0.902 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.114 0.886 36 H 0.052 0.948 37 H 0.047 0.953 38 H 0.007 0.993 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.073 0.927 44 H 0.151 0.849 45 H 0.147 0.853 46 H 0.147 0.853 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -15.707 1.663 -14.339 21.332 hybrid contribution 0.775 -0.124 0.077 0.789 sum -14.931 1.539 -14.262 20.705 Atomic orbital electron populations 1.22648 0.82979 1.02129 0.98703 1.88142 1.17611 1.26991 1.94938 1.22574 0.94931 0.84943 0.98122 1.22021 0.91868 0.97181 0.95667 1.62022 1.29765 1.31094 1.01401 1.19783 0.81954 0.94055 0.97457 1.21224 0.94584 1.15377 1.22565 0.91310 1.24966 0.95438 0.97534 0.96721 1.69952 0.99191 1.41667 1.43535 0.86525 0.77022 0.82623 0.81442 1.20713 1.21540 1.19755 1.22104 1.00353 0.93854 0.91331 1.22961 0.86036 0.93923 0.97793 1.86285 1.41266 1.58807 1.33032 1.18884 0.93270 0.91891 0.86159 1.21511 1.00745 1.04279 0.94595 1.20807 0.96516 0.95574 0.97156 1.20922 0.94238 1.01272 0.98508 1.16847 0.89641 0.97208 0.95383 1.23669 0.97047 0.98013 0.86488 1.76158 1.00182 1.12561 1.24574 1.78931 1.20774 1.10066 0.94913 1.47726 1.13504 1.33405 1.13041 0.67199 1.74907 1.00806 1.13009 1.25959 1.20325 0.97438 0.97620 0.97773 0.95326 0.94772 0.90177 0.94525 0.94320 0.88574 0.94826 0.95268 0.99327 0.93114 0.93406 0.91302 0.91052 0.92732 0.84948 0.85267 0.85278 0.83888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.59 16 2 O -0.36 -6.90 10.63 -35.23 -0.37 -7.27 16 3 C 0.07 1.20 6.11 37.16 0.23 1.43 16 4 C 0.06 1.17 5.18 -3.82 -0.02 1.16 16 5 N -0.52 -11.00 4.22 -236.07 -1.00 -12.00 16 6 C 0.19 4.90 4.54 -4.98 -0.02 4.88 16 7 C -0.50 -14.13 8.23 -34.44 -0.28 -14.41 16 8 H 0.07 2.00 7.32 -52.49 -0.38 1.62 16 9 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 10 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 11 Si 0.90 22.25 29.54 -169.99 -5.02 17.23 16 12 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 14 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 15 C 0.05 0.89 5.20 -3.82 -0.02 0.87 16 16 C 0.07 1.09 4.94 37.16 0.18 1.28 16 17 O -0.28 -4.96 10.07 -19.46 -0.20 -5.16 16 18 C 0.15 2.26 6.68 -39.27 -0.26 2.00 16 19 C -0.19 -2.54 9.04 -39.38 -0.36 -2.90 16 20 C -0.08 -0.94 10.03 -39.65 -0.40 -1.34 16 21 C -0.13 -1.52 9.69 -39.25 -0.38 -1.90 16 22 C 0.01 0.17 5.87 -104.91 -0.62 -0.44 16 23 C 0.23 3.02 7.94 -156.31 -1.24 1.78 16 24 N -0.26 -3.68 12.23 32.16 0.39 -3.28 16 25 N -0.05 -0.59 13.47 60.35 0.81 0.22 16 26 N -0.23 -1.92 7.90 60.35 0.48 -1.44 16 27 H 0.47 1.45 8.96 -340.37 -3.05 -1.60 16 28 N -0.30 -3.23 12.08 32.17 0.39 -2.84 16 29 C -0.11 -1.67 9.64 -39.11 -0.38 -2.05 16 30 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.04 0.60 6.72 -51.93 -0.35 0.25 16 35 H 0.10 2.11 6.58 -51.93 -0.34 1.77 16 36 H 0.03 0.58 7.99 -51.93 -0.41 0.17 16 37 H 0.03 0.79 6.62 -51.93 -0.34 0.45 16 38 H -0.01 -0.29 8.12 -51.93 -0.42 -0.72 16 39 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.05 0.77 7.99 -51.93 -0.41 0.36 16 41 H 0.07 1.05 6.49 -51.93 -0.34 0.71 16 42 H 0.07 1.26 6.45 -51.93 -0.34 0.93 16 43 H 0.05 0.68 7.42 -51.93 -0.39 0.30 16 44 H 0.13 1.58 6.28 -52.48 -0.33 1.25 16 45 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 46 H 0.13 1.29 7.88 -52.49 -0.41 0.87 16 47 H 0.14 2.23 7.89 -52.48 -0.41 1.82 16 LS Contribution 395.95 15.07 5.97 5.97 Total: -1.00 -34.67 395.95 -9.55 -44.21 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -9.18 Total: -2.95 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -2.55 Total: -6.62 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: 1.81 Total: -45.41 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: -0.57 Total: -12.43 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.67 -9.55 -44.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821689272.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.240 kcal (2) G-P(sol) polarization free energy of solvation -34.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds