Wall clock time and date at job start Wed Apr 1 2020 06:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42893 * 114.00133 * 2 1 4 4 C 1.53005 * 109.47310 * 179.97438 * 3 2 1 5 5 N 1.46905 * 109.46579 * 63.65521 * 4 3 2 6 6 C 1.46897 * 110.99794 * 200.25254 * 5 4 3 7 7 C 1.50700 * 109.46855 * 66.04911 * 6 5 4 8 8 H 1.08000 * 120.00225 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99987 * 179.97438 * 7 6 5 10 10 N 1.31508 * 120.00039 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99857 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47062 * 89.99911 * 11 9 7 13 13 H 1.48501 * 109.46951 * 209.99900 * 11 9 7 14 14 H 1.48496 * 109.47375 * 329.99747 * 11 9 7 15 15 C 1.46901 * 110.99560 * 76.30544 * 5 4 3 16 16 C 1.53004 * 109.46758 * 200.49733 * 15 5 4 17 17 O 1.42895 * 109.47105 * 64.35860 * 16 15 5 18 18 C 1.35910 * 116.99687 * 176.12032 * 17 16 15 19 19 C 1.38820 * 120.00022 * 0.02562 * 18 17 16 20 20 C 1.38200 * 120.18250 * 179.97438 * 19 18 17 21 21 C 1.38077 * 120.17672 * 0.02562 * 20 19 18 22 22 C 1.39297 * 119.99199 * 359.97438 * 21 20 19 23 23 C 1.48476 * 120.08829 * 180.02562 * 22 21 20 24 24 N 1.34044 * 126.67010 * 179.68824 * 23 22 21 25 25 N 1.28983 * 107.26577 * 179.86930 * 24 23 22 26 26 N 1.28734 * 108.94540 * 0.40208 * 25 24 23 27 27 H 0.96998 * 125.34429 * 179.76841 * 26 25 24 28 28 N 1.28870 * 109.31175 * 359.73927 * 26 25 24 29 29 C 1.38509 * 119.99633 * 179.97438 * 18 17 16 30 30 H 1.08997 * 109.47194 * 300.00111 * 1 2 3 31 31 H 1.09001 * 109.46956 * 60.00245 * 1 2 3 32 32 H 1.09001 * 109.47391 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47214 * 59.99797 * 3 2 1 34 34 H 1.09000 * 109.47247 * 300.00148 * 3 2 1 35 35 H 1.08994 * 109.46974 * 303.66130 * 4 3 2 36 36 H 1.08999 * 109.47159 * 183.65585 * 4 3 2 37 37 H 1.08991 * 109.47185 * 186.04610 * 6 5 4 38 38 H 1.09001 * 109.47427 * 306.05495 * 6 5 4 39 39 H 0.97001 * 120.00529 * 179.97438 * 10 9 7 40 40 H 1.08996 * 109.47404 * 80.49928 * 15 5 4 41 41 H 1.09002 * 109.47148 * 320.49222 * 15 5 4 42 42 H 1.09004 * 109.46917 * 304.35825 * 16 15 5 43 43 H 1.08998 * 109.46970 * 184.36145 * 16 15 5 44 44 H 1.08006 * 119.90727 * 359.97438 * 19 18 17 45 45 H 1.08008 * 119.90785 * 179.97438 * 20 19 18 46 46 H 1.08001 * 120.00001 * 180.27654 * 21 20 19 47 47 H 1.08003 * 120.09138 * 0.02562 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9755 0.5330 -1.2403 6 6 5.3237 -0.0306 -1.0895 7 6 5.2887 -1.1552 -0.0869 8 1 4.3580 -1.4246 0.3901 9 6 6.4447 -1.8409 0.2205 10 7 7.5778 -1.5139 -0.3615 11 14 6.4012 -3.2354 1.4627 12 1 6.1241 -4.5146 0.7612 13 1 7.7126 -3.3237 2.1538 14 1 5.3324 -2.9763 2.4605 15 6 3.9188 1.4660 -2.3735 16 6 3.8772 0.6759 -3.6830 17 8 2.6690 -0.0848 -3.7422 18 6 2.4360 -0.7849 -4.8836 19 6 3.3529 -0.7400 -5.9248 20 6 3.1200 -1.4508 -7.0869 21 6 1.9736 -2.2090 -7.2187 22 6 1.0486 -2.2593 -6.1785 23 6 -0.1846 -3.0745 -6.3178 24 7 -1.1544 -3.2214 -5.4042 25 7 -2.0446 -4.0037 -5.9134 26 7 -1.6676 -4.3537 -7.0936 27 1 -2.1587 -4.9422 -7.6880 28 7 -0.5358 -3.7988 -7.3614 29 6 1.2840 -1.5439 -5.0073 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8463 -0.8900 35 1 3.8524 0.5882 0.8562 36 1 3.9787 2.1783 0.0662 37 1 5.6679 -0.4116 -2.0509 38 1 6.0051 0.7455 -0.7411 39 1 8.3912 -1.9960 -0.1450 40 1 4.8017 2.1050 -2.3626 41 1 3.0233 2.0822 -2.2923 42 1 4.7332 0.0026 -3.7284 43 1 3.9132 1.3667 -4.5254 44 1 4.2509 -0.1479 -5.8264 45 1 3.8363 -1.4123 -7.8944 46 1 1.7966 -2.7670 -8.1264 47 1 0.5698 -1.5802 -4.1980 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821689272.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:28:59 Heat of formation + Delta-G solvation = 55.693853 kcal Electronic energy + Delta-G solvation = -30260.072220 eV Core-core repulsion = 26060.100164 eV Total energy + Delta-G solvation = -4199.972057 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -45.48129 -41.04505 -39.34400 -38.48198 -37.47060 -35.41184 -34.68933 -34.45822 -32.25680 -31.48004 -30.77199 -30.11998 -27.91714 -26.78390 -25.82609 -25.61856 -24.39433 -23.71568 -23.24080 -22.28850 -21.15968 -20.19248 -19.05211 -18.52978 -18.15767 -17.41363 -17.22794 -16.89231 -16.81485 -16.68324 -16.36955 -16.09829 -15.83696 -15.33847 -15.15018 -15.03828 -14.62729 -14.49921 -14.11913 -13.93921 -13.72006 -13.50164 -13.36216 -13.18379 -12.86403 -12.74619 -12.69460 -12.57117 -12.46127 -12.38177 -12.33032 -12.14844 -12.11256 -11.91757 -11.70815 -11.57261 -11.30407 -11.15252 -10.56245 -10.35163 -9.78436 -9.10812 -8.82780 -8.16124 -6.22349 -0.32815 0.16738 0.49665 1.31031 1.39900 1.40218 1.41726 1.52913 2.27459 2.43378 2.73479 2.83763 3.10518 3.16475 3.19501 3.31339 3.88755 3.98325 4.08565 4.16173 4.20937 4.32725 4.34568 4.38626 4.41542 4.44671 4.53066 4.55770 4.59565 4.64959 4.66361 4.71646 4.79641 4.90332 4.93780 4.99312 5.11114 5.28398 5.31874 5.34399 5.44469 5.45998 5.61805 5.72319 5.76436 6.14464 6.39789 6.54350 6.59962 6.79489 6.94561 7.10148 7.46012 8.94387 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009090 B = 0.002878 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3079.590780 B = 9727.138967 C =10052.050205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.402 6.402 3 C 0.078 3.922 4 C 0.059 3.941 5 N -0.532 5.532 6 C 0.211 3.789 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.005 3.995 10 N -0.932 5.932 11 Si 0.958 3.042 12 H -0.279 1.279 13 H -0.279 1.279 14 H -0.269 1.269 15 C 0.050 3.950 16 C 0.072 3.928 17 O -0.309 6.309 18 C 0.120 3.880 19 C -0.196 4.196 20 C -0.074 4.074 21 C -0.121 4.121 22 C 0.007 3.993 23 C 0.212 3.788 24 N -0.297 5.297 25 N -0.057 5.057 26 N -0.198 5.198 27 H 0.495 0.505 28 N -0.285 5.285 29 C -0.129 4.129 30 H 0.051 0.949 31 H 0.043 0.957 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.061 0.939 36 H 0.054 0.946 37 H 0.008 0.992 38 H -0.033 1.033 39 H 0.263 0.737 40 H 0.058 0.942 41 H 0.091 0.909 42 H 0.046 0.954 43 H 0.093 0.907 44 H 0.144 0.856 45 H 0.166 0.834 46 H 0.153 0.847 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.973 2.408 -16.319 22.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.321 6.321 3 C 0.001 3.999 4 C -0.069 4.069 5 N -0.257 5.257 6 C 0.085 3.915 7 C -0.551 4.551 8 H 0.072 0.928 9 C -0.192 4.192 10 N -0.573 5.573 11 Si 0.783 3.217 12 H -0.204 1.204 13 H -0.204 1.204 14 H -0.194 1.194 15 C -0.078 4.078 16 C -0.003 4.003 17 O -0.222 6.222 18 C 0.074 3.926 19 C -0.215 4.215 20 C -0.091 4.091 21 C -0.141 4.141 22 C 0.003 3.997 23 C -0.068 4.068 24 N -0.169 5.169 25 N -0.052 5.052 26 N -0.049 5.049 27 H 0.355 0.645 28 N -0.138 5.138 29 C -0.150 4.150 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.026 0.974 38 H -0.016 1.016 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.109 0.891 42 H 0.064 0.936 43 H 0.111 0.889 44 H 0.161 0.839 45 H 0.183 0.817 46 H 0.171 0.829 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -16.730 1.565 -16.019 23.216 hybrid contribution 0.974 -0.141 0.467 1.089 sum -15.757 1.424 -15.552 22.185 Atomic orbital electron populations 1.22790 0.80791 1.02792 1.00237 1.88076 1.20189 1.28567 1.95306 1.22558 0.92713 0.84534 1.00081 1.22046 0.94115 0.97194 0.93544 1.61917 1.26804 1.33513 1.03477 1.19374 0.83959 0.92850 0.95304 1.21451 0.94077 1.16392 1.23186 0.92804 1.25743 0.95100 0.99873 0.98514 1.70048 0.99719 1.42809 1.44751 0.85559 0.77423 0.79480 0.79229 1.20444 1.20391 1.19371 1.22239 1.01792 0.93597 0.90136 1.22929 0.84872 0.93931 0.98606 1.86222 1.41677 1.59732 1.34577 1.19098 0.94287 0.92808 0.86454 1.21724 1.00536 1.04654 0.94593 1.21218 0.96759 0.93959 0.97187 1.21239 0.93592 1.00723 0.98556 1.16992 0.90346 0.97021 0.95323 1.23679 0.97208 0.98895 0.87037 1.76147 1.01062 1.13886 1.25803 1.78868 1.20460 1.10100 0.95786 1.47796 1.12576 1.32088 1.12452 0.64515 1.74856 1.01341 1.12550 1.25073 1.20275 0.97517 0.98957 0.98299 0.93001 0.93837 0.90118 0.91743 0.92856 0.92053 0.92802 0.97412 1.01555 0.92841 0.92367 0.89072 0.93606 0.88897 0.83850 0.81668 0.82932 0.85688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 11.01 113.37 1.25 2.11 16 2 O -0.40 -15.53 10.63 -148.98 -1.58 -17.11 16 3 C 0.08 2.54 6.11 71.98 0.44 2.98 16 4 C 0.06 2.31 5.18 86.30 0.45 2.75 16 5 N -0.53 -23.20 4.22 -900.79 -3.80 -26.99 16 6 C 0.21 11.23 4.54 85.56 0.39 11.61 16 7 C -0.51 -30.13 8.23 25.60 0.21 -29.92 16 8 H 0.05 3.27 7.32 -2.91 -0.02 3.24 16 9 C 0.01 0.31 5.46 84.66 0.46 0.78 16 10 N -0.93 -56.50 13.29 21.45 0.28 -56.22 16 11 Si 0.96 46.43 29.54 68.60 2.03 48.46 16 12 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 13 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 14 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 15 C 0.05 1.70 5.20 86.30 0.45 2.15 16 16 C 0.07 2.31 4.94 71.98 0.36 2.66 16 17 O -0.31 -11.15 10.07 -92.53 -0.93 -12.08 16 18 C 0.12 3.80 6.68 22.47 0.15 3.95 16 19 C -0.20 -4.99 9.04 22.40 0.20 -4.79 16 20 C -0.07 -1.49 10.03 22.22 0.22 -1.27 16 21 C -0.12 -2.60 9.69 22.49 0.22 -2.38 16 22 C 0.01 0.18 5.87 -20.05 -0.12 0.06 16 23 C 0.21 5.49 7.94 137.39 1.09 6.58 16 24 N -0.30 -8.37 12.23 -52.18 -0.64 -9.01 16 25 N -0.06 -1.26 13.47 37.02 0.50 -0.76 16 26 N -0.20 -2.91 7.90 37.02 0.29 -2.62 16 27 H 0.50 1.79 8.96 -347.54 -3.12 -1.33 16 28 N -0.29 -5.71 12.08 -52.12 -0.63 -6.34 16 29 C -0.13 -4.06 9.64 22.58 0.22 -3.84 16 30 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.06 1.73 8.14 -2.38 -0.02 1.72 16 34 H 0.05 1.57 6.72 -2.39 -0.02 1.56 16 35 H 0.06 2.80 6.58 -2.39 -0.02 2.78 16 36 H 0.05 1.84 7.99 -2.39 -0.02 1.82 16 37 H 0.01 0.45 6.62 -2.39 -0.02 0.43 16 38 H -0.03 -1.86 8.12 -2.39 -0.02 -1.88 16 39 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 40 H 0.06 1.85 7.99 -2.39 -0.02 1.83 16 41 H 0.09 2.65 6.49 -2.39 -0.02 2.64 16 42 H 0.05 1.68 6.45 -2.39 -0.02 1.67 16 43 H 0.09 2.21 7.42 -2.39 -0.02 2.19 16 44 H 0.14 3.25 6.28 -2.91 -0.02 3.23 16 45 H 0.17 2.15 8.06 -2.91 -0.02 2.13 16 46 H 0.15 2.54 7.88 -2.91 -0.02 2.52 16 47 H 0.13 4.23 7.89 -2.91 -0.02 4.21 16 Total: -1.00 -78.10 395.95 -0.60 -78.70 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -2.11 Total: 10.55 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: 5.98 Total: -6.56 kcal Atomic # 7 Polarization: -97.96 SS G_CDS: -3.99 Total: -101.95 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -2.52 Total: -29.20 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -78.10 -0.60 -78.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821689272.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.390 kcal (2) G-P(sol) polarization free energy of solvation -78.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds