Wall clock time and date at job start Wed Apr 1 2020 06:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 114.00175 * 2 1 4 4 C 1.52996 * 109.46966 * 180.02562 * 3 2 1 5 5 N 1.46901 * 109.47491 * 67.02462 * 4 3 2 6 6 C 1.46896 * 111.00096 * 289.91372 * 5 4 3 7 7 C 1.50700 * 109.47044 * 299.64343 * 6 5 4 8 8 H 1.08004 * 119.99762 * 354.96518 * 7 6 5 9 9 C 1.37882 * 120.00345 * 174.96751 * 7 6 5 10 10 N 1.31511 * 120.00009 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 119.99702 * 359.97438 * 9 7 6 12 12 H 1.48495 * 109.47476 * 89.99896 * 11 9 7 13 13 H 1.48504 * 109.47176 * 210.00309 * 11 9 7 14 14 H 1.48507 * 109.47107 * 329.99853 * 11 9 7 15 15 C 1.46906 * 110.99840 * 53.86624 * 5 4 3 16 16 C 1.53000 * 109.46944 * 66.04468 * 15 5 4 17 17 H 1.08998 * 109.47286 * 304.99727 * 16 15 5 18 18 O 1.42898 * 109.47127 * 65.00305 * 16 15 5 19 19 C 1.50702 * 109.46681 * 184.99964 * 16 15 5 20 20 C 1.38317 * 119.87866 * 100.00167 * 19 16 15 21 21 C 1.38027 * 120.11701 * 179.97438 * 20 19 16 22 22 C 1.39306 * 119.88163 * 0.02562 * 21 20 19 23 23 C 1.48458 * 120.11847 * 179.97438 * 22 21 20 24 24 N 1.34054 * 126.67133 * 0.02562 * 23 22 21 25 25 N 1.28984 * 107.26514 * 180.02562 * 24 23 22 26 26 N 1.28737 * 108.94661 * 359.97438 * 25 24 23 27 27 H 0.96996 * 125.34185 * 179.97438 * 26 25 24 28 28 N 1.28875 * 109.31336 * 359.73097 * 26 25 24 29 29 C 1.39303 * 119.76353 * 359.97438 * 22 21 20 30 30 C 1.38026 * 119.87969 * 0.02562 * 29 22 21 31 31 H 1.09001 * 109.47561 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46869 * 299.99713 * 1 2 3 33 33 H 1.09000 * 109.46823 * 59.99714 * 1 2 3 34 34 H 1.08995 * 109.47025 * 60.00081 * 3 2 1 35 35 H 1.08996 * 109.47275 * 299.99795 * 3 2 1 36 36 H 1.09001 * 109.47410 * 307.02479 * 4 3 2 37 37 H 1.09003 * 109.47567 * 187.02861 * 4 3 2 38 38 H 1.08991 * 109.47486 * 59.64083 * 6 5 4 39 39 H 1.09001 * 109.47064 * 179.64655 * 6 5 4 40 40 H 0.97001 * 119.99744 * 179.97438 * 10 9 7 41 41 H 1.09006 * 109.46768 * 306.04843 * 15 5 4 42 42 H 1.09000 * 109.46825 * 186.04877 * 15 5 4 43 43 H 0.96702 * 113.99689 * 59.99732 * 18 16 15 44 44 H 1.08002 * 119.94233 * 359.97438 * 20 19 16 45 45 H 1.08005 * 120.06059 * 179.72279 * 21 20 19 46 46 H 1.07996 * 120.05564 * 180.02562 * 29 22 21 47 47 H 1.08000 * 119.93947 * 180.02562 * 30 29 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1845 -0.0006 5 7 3.9804 0.6071 -1.2760 6 6 3.6025 -0.8090 -1.3732 7 6 4.2485 -1.5795 -0.2507 8 1 4.9410 -1.0855 0.4148 9 6 3.9556 -2.9151 -0.0732 10 7 4.5191 -3.5873 0.9067 11 14 2.7575 -3.7694 -1.2239 12 1 3.4996 -4.3407 -2.3762 13 1 2.0616 -4.8593 -0.4937 14 1 1.7584 -2.7872 -1.7164 15 6 3.4518 1.3723 -2.4132 16 6 4.0655 2.7738 -2.4142 17 1 3.8870 3.2494 -1.4499 18 8 5.4725 2.6776 -2.6448 19 6 3.4329 3.5983 -3.5057 20 6 2.4326 4.5016 -3.1949 21 6 1.8502 5.2596 -4.1906 22 6 2.2712 5.1133 -5.5104 23 6 1.6480 5.9255 -6.5856 24 7 0.6748 6.8357 -6.4394 25 7 0.4177 7.3126 -7.6099 26 7 1.1850 6.7418 -8.4716 27 1 1.1906 6.9225 -9.4246 28 7 1.9481 5.8962 -7.8687 29 6 3.2790 4.2020 -5.8178 30 6 3.8546 3.4490 -4.8144 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.6887 1.8463 0.8900 35 1 1.6887 1.8463 -0.8900 36 1 3.8491 0.5388 0.8196 37 1 3.9784 2.1725 0.1251 38 1 2.5189 -0.9017 -1.3008 39 1 3.9384 -1.2100 -2.3295 40 1 4.3127 -4.5268 1.0317 41 1 2.3680 1.4503 -2.3263 42 1 3.7061 0.8635 -3.3431 43 1 5.7056 2.2633 -3.4869 44 1 2.1067 4.6140 -2.1714 45 1 1.0661 5.9615 -3.9476 46 1 3.6093 4.0850 -6.8393 47 1 4.6364 2.7426 -5.0516 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821689373.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:28:21 Heat of formation + Delta-G solvation = 78.765781 kcal Electronic energy + Delta-G solvation = -30415.907979 eV Core-core repulsion = 26216.936396 eV Total energy + Delta-G solvation = -4198.971583 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.80478 -40.00301 -38.43799 -36.98223 -35.39730 -34.70409 -33.88557 -32.39066 -31.41044 -31.19917 -29.32696 -28.78130 -26.43267 -25.74820 -25.09502 -24.32083 -23.20115 -22.62892 -21.99691 -20.89732 -19.59510 -19.44481 -17.60444 -17.49273 -16.91872 -16.42736 -16.26082 -16.04327 -15.55709 -15.29109 -14.65101 -14.44642 -14.38467 -14.16077 -13.98836 -13.79560 -13.64524 -13.29443 -13.23243 -12.82006 -12.39147 -12.27698 -12.16228 -11.82498 -11.74382 -11.64321 -11.52578 -11.38211 -11.27519 -11.18982 -11.12691 -10.78441 -10.67387 -10.41445 -10.25823 -9.92229 -9.63635 -9.21979 -9.11970 -9.08300 -8.73822 -8.39649 -7.17869 -5.89538 -3.83228 0.38482 0.84013 1.14171 1.87152 2.02740 3.33737 3.37986 3.44833 3.49863 3.51369 3.84462 4.24112 4.41485 4.57010 4.58749 4.66044 4.71197 4.89875 5.07841 5.08109 5.14292 5.17301 5.35821 5.41053 5.43702 5.46018 5.54427 5.59282 5.62652 5.71714 5.76737 5.81551 5.95345 5.97908 6.04272 6.09257 6.09948 6.14000 6.19699 6.42222 6.60982 6.74327 7.05578 7.38737 7.66495 7.72385 7.78188 7.82139 7.98341 8.16276 8.80292 9.17853 9.74188 11.24108 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016384 B = 0.002355 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.533737 B =11885.618895 C =12042.677213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.351 6.351 3 C 0.021 3.979 4 C 0.057 3.943 5 N -0.511 5.511 6 C 0.150 3.850 7 C -0.490 4.490 8 H 0.077 0.923 9 C 0.069 3.931 10 N -0.907 5.907 11 Si 0.872 3.128 12 H -0.282 1.282 13 H -0.291 1.291 14 H -0.264 1.264 15 C 0.020 3.980 16 C 0.148 3.852 17 H 0.108 0.892 18 O -0.537 6.537 19 C -0.084 4.084 20 C -0.113 4.113 21 C -0.072 4.072 22 C -0.030 4.030 23 C 0.225 3.775 24 N -0.270 5.270 25 N -0.050 5.050 26 N -0.229 5.229 27 H 0.475 0.525 28 N -0.296 5.296 29 C -0.074 4.074 30 C -0.114 4.114 31 H 0.079 0.921 32 H 0.034 0.966 33 H 0.030 0.970 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.104 0.896 37 H 0.072 0.928 38 H 0.030 0.970 39 H 0.012 0.988 40 H 0.260 0.740 41 H 0.040 0.960 42 H 0.071 0.929 43 H 0.370 0.630 44 H 0.132 0.868 45 H 0.136 0.864 46 H 0.133 0.867 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.662 20.595 -16.059 27.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.269 6.269 3 C -0.057 4.057 4 C -0.071 4.071 5 N -0.233 5.233 6 C 0.024 3.976 7 C -0.529 4.529 8 H 0.095 0.905 9 C -0.131 4.131 10 N -0.548 5.548 11 Si 0.700 3.300 12 H -0.208 1.208 13 H -0.217 1.217 14 H -0.189 1.189 15 C -0.109 4.109 16 C 0.088 3.912 17 H 0.125 0.875 18 O -0.342 6.342 19 C -0.086 4.086 20 C -0.132 4.132 21 C -0.092 4.092 22 C -0.033 4.033 23 C -0.055 4.055 24 N -0.143 5.143 25 N -0.045 5.045 26 N -0.075 5.075 27 H 0.330 0.670 28 N -0.147 5.147 29 C -0.094 4.094 30 C -0.132 4.132 31 H 0.098 0.902 32 H 0.052 0.948 33 H 0.048 0.952 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.122 0.878 37 H 0.090 0.910 38 H 0.048 0.952 39 H 0.030 0.970 40 H 0.070 0.930 41 H 0.058 0.942 42 H 0.090 0.910 43 H 0.217 0.783 44 H 0.150 0.850 45 H 0.154 0.846 46 H 0.151 0.849 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.420 21.008 -15.666 27.236 hybrid contribution -1.673 -0.845 -1.679 2.517 sum -9.093 20.163 -17.344 28.108 Atomic orbital electron populations 1.22708 0.83572 1.02189 0.98741 1.88396 1.17473 1.26321 1.94666 1.23411 0.97658 0.85779 0.98895 1.22308 0.89043 1.00213 0.95551 1.62105 1.57784 1.04109 0.99319 1.20485 0.96635 0.83304 0.97170 1.20932 1.25247 0.94136 1.12563 0.90496 1.24809 0.95816 0.97329 0.95165 1.69899 1.44403 1.09129 1.31342 0.86900 0.82396 0.79404 0.81258 1.20789 1.21690 1.18860 1.22837 0.97426 0.93662 0.96933 1.20946 0.81230 0.93589 0.95462 0.87460 1.86659 1.20896 1.83316 1.43319 1.20992 0.95761 0.96069 0.95741 1.20962 0.96558 0.95959 0.99671 1.21141 0.98834 0.98415 0.90832 1.17213 0.98721 0.97828 0.89527 1.23750 0.94791 0.96977 0.89937 1.76093 1.14305 1.10159 1.13707 1.78913 1.14337 1.17524 0.93774 1.47731 1.22049 1.24204 1.13470 0.67048 1.74939 1.18066 1.13786 1.07909 1.21101 0.94299 0.94012 1.00020 1.20861 1.00551 0.99908 0.91866 0.90219 0.94786 0.95156 0.94088 0.94085 0.87808 0.90962 0.95215 0.97017 0.93034 0.94214 0.91032 0.78264 0.85013 0.84647 0.84936 0.85075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 11.01 101.05 1.11 1.49 16 2 O -0.35 -6.87 7.58 -35.23 -0.27 -7.13 16 3 C 0.02 0.34 5.69 37.16 0.21 0.55 16 4 C 0.06 1.05 5.37 -3.83 -0.02 1.03 16 5 N -0.51 -10.09 4.70 -236.07 -1.11 -11.20 16 6 C 0.15 3.57 3.39 -4.98 -0.02 3.55 16 7 C -0.49 -13.86 8.77 -34.44 -0.30 -14.17 16 8 H 0.08 2.38 7.23 -52.48 -0.38 2.00 16 9 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 10 N -0.91 -28.21 13.96 55.43 0.77 -27.44 16 11 Si 0.87 22.01 27.57 -169.99 -4.69 17.32 16 12 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 14 H -0.26 -6.41 6.40 56.52 0.36 -6.05 16 15 C 0.02 0.32 4.21 -3.82 -0.02 0.30 16 16 C 0.15 1.88 3.16 -27.88 -0.09 1.79 16 17 H 0.11 1.36 6.32 -51.93 -0.33 1.03 16 18 O -0.54 -7.44 13.14 -35.23 -0.46 -7.90 16 19 C -0.08 -0.91 4.98 -104.57 -0.52 -1.43 16 20 C -0.11 -1.13 9.65 -39.63 -0.38 -1.51 16 21 C -0.07 -0.71 9.70 -39.26 -0.38 -1.09 16 22 C -0.03 -0.31 5.88 -104.89 -0.62 -0.92 16 23 C 0.23 2.38 7.94 -156.30 -1.24 1.14 16 24 N -0.27 -2.99 12.23 32.15 0.39 -2.60 16 25 N -0.05 -0.46 13.47 60.35 0.81 0.35 16 26 N -0.23 -1.47 7.90 60.35 0.48 -1.00 16 27 H 0.48 0.70 8.96 -340.36 -3.05 -2.35 16 28 N -0.30 -2.66 12.08 32.17 0.39 -2.27 16 29 C -0.07 -0.71 9.70 -39.26 -0.38 -1.09 16 30 C -0.11 -1.11 9.30 -39.63 -0.37 -1.48 16 31 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.04 0.59 5.79 -51.93 -0.30 0.29 16 36 H 0.10 2.26 6.33 -51.93 -0.33 1.93 16 37 H 0.07 1.13 6.67 -51.93 -0.35 0.78 16 38 H 0.03 0.74 3.99 -51.93 -0.21 0.53 16 39 H 0.01 0.29 7.73 -51.93 -0.40 -0.11 16 40 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 41 H 0.04 0.61 5.71 -51.93 -0.30 0.32 16 42 H 0.07 1.09 8.01 -51.93 -0.42 0.67 16 43 H 0.37 3.98 7.49 45.56 0.34 4.32 16 44 H 0.13 1.09 8.03 -52.49 -0.42 0.67 16 45 H 0.14 1.20 7.89 -52.48 -0.41 0.79 16 46 H 0.13 1.09 7.88 -52.49 -0.41 0.68 16 47 H 0.13 1.05 6.77 -52.49 -0.36 0.70 16 LS Contribution 383.14 15.07 5.77 5.77 Total: -1.00 -35.89 383.14 -9.20 -45.09 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -8.18 Total: 0.91 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: -3.11 Total: -9.91 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: 1.74 Total: -44.15 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.73 Total: -15.04 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.69 Total: 17.32 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.89 -9.20 -45.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821689373.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.855 kcal (2) G-P(sol) polarization free energy of solvation -35.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds