Wall clock time and date at job start Wed Apr 1 2020 06:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 114.00175 * 2 1 4 4 C 1.52996 * 109.46966 * 180.02562 * 3 2 1 5 5 N 1.46901 * 109.47491 * 67.02462 * 4 3 2 6 6 C 1.46896 * 111.00096 * 289.91372 * 5 4 3 7 7 C 1.50700 * 109.47044 * 299.64343 * 6 5 4 8 8 H 1.08004 * 119.99762 * 354.96518 * 7 6 5 9 9 C 1.37882 * 120.00345 * 174.96751 * 7 6 5 10 10 N 1.31511 * 120.00009 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 119.99702 * 359.97438 * 9 7 6 12 12 H 1.48495 * 109.47476 * 89.99896 * 11 9 7 13 13 H 1.48504 * 109.47176 * 210.00309 * 11 9 7 14 14 H 1.48507 * 109.47107 * 329.99853 * 11 9 7 15 15 C 1.46906 * 110.99840 * 53.86624 * 5 4 3 16 16 C 1.53000 * 109.46944 * 66.04468 * 15 5 4 17 17 H 1.08998 * 109.47286 * 304.99727 * 16 15 5 18 18 O 1.42898 * 109.47127 * 65.00305 * 16 15 5 19 19 C 1.50702 * 109.46681 * 184.99964 * 16 15 5 20 20 C 1.38317 * 119.87866 * 100.00167 * 19 16 15 21 21 C 1.38027 * 120.11701 * 179.97438 * 20 19 16 22 22 C 1.39306 * 119.88163 * 0.02562 * 21 20 19 23 23 C 1.48458 * 120.11847 * 179.97438 * 22 21 20 24 24 N 1.34054 * 126.67133 * 0.02562 * 23 22 21 25 25 N 1.28984 * 107.26514 * 180.02562 * 24 23 22 26 26 N 1.28737 * 108.94661 * 359.97438 * 25 24 23 27 27 H 0.96996 * 125.34185 * 179.97438 * 26 25 24 28 28 N 1.28875 * 109.31336 * 359.73097 * 26 25 24 29 29 C 1.39303 * 119.76353 * 359.97438 * 22 21 20 30 30 C 1.38026 * 119.87969 * 0.02562 * 29 22 21 31 31 H 1.09001 * 109.47561 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46869 * 299.99713 * 1 2 3 33 33 H 1.09000 * 109.46823 * 59.99714 * 1 2 3 34 34 H 1.08995 * 109.47025 * 60.00081 * 3 2 1 35 35 H 1.08996 * 109.47275 * 299.99795 * 3 2 1 36 36 H 1.09001 * 109.47410 * 307.02479 * 4 3 2 37 37 H 1.09003 * 109.47567 * 187.02861 * 4 3 2 38 38 H 1.08991 * 109.47486 * 59.64083 * 6 5 4 39 39 H 1.09001 * 109.47064 * 179.64655 * 6 5 4 40 40 H 0.97001 * 119.99744 * 179.97438 * 10 9 7 41 41 H 1.09006 * 109.46768 * 306.04843 * 15 5 4 42 42 H 1.09000 * 109.46825 * 186.04877 * 15 5 4 43 43 H 0.96702 * 113.99689 * 59.99732 * 18 16 15 44 44 H 1.08002 * 119.94233 * 359.97438 * 20 19 16 45 45 H 1.08005 * 120.06059 * 179.72279 * 21 20 19 46 46 H 1.07996 * 120.05564 * 180.02562 * 29 22 21 47 47 H 1.08000 * 119.93947 * 180.02562 * 30 29 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1845 -0.0006 5 7 3.9804 0.6071 -1.2760 6 6 3.6025 -0.8090 -1.3732 7 6 4.2485 -1.5795 -0.2507 8 1 4.9410 -1.0855 0.4148 9 6 3.9556 -2.9151 -0.0732 10 7 4.5191 -3.5873 0.9067 11 14 2.7575 -3.7694 -1.2239 12 1 3.4996 -4.3407 -2.3762 13 1 2.0616 -4.8593 -0.4937 14 1 1.7584 -2.7872 -1.7164 15 6 3.4518 1.3723 -2.4132 16 6 4.0655 2.7738 -2.4142 17 1 3.8870 3.2494 -1.4499 18 8 5.4725 2.6776 -2.6448 19 6 3.4329 3.5983 -3.5057 20 6 2.4326 4.5016 -3.1949 21 6 1.8502 5.2596 -4.1906 22 6 2.2712 5.1133 -5.5104 23 6 1.6480 5.9255 -6.5856 24 7 0.6748 6.8357 -6.4394 25 7 0.4177 7.3126 -7.6099 26 7 1.1850 6.7418 -8.4716 27 1 1.1906 6.9225 -9.4246 28 7 1.9481 5.8962 -7.8687 29 6 3.2790 4.2020 -5.8178 30 6 3.8546 3.4490 -4.8144 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.6887 1.8463 0.8900 35 1 1.6887 1.8463 -0.8900 36 1 3.8491 0.5388 0.8196 37 1 3.9784 2.1725 0.1251 38 1 2.5189 -0.9017 -1.3008 39 1 3.9384 -1.2100 -2.3295 40 1 4.3127 -4.5268 1.0317 41 1 2.3680 1.4503 -2.3263 42 1 3.7061 0.8635 -3.3431 43 1 5.7056 2.2633 -3.4869 44 1 2.1067 4.6140 -2.1714 45 1 1.0661 5.9615 -3.9476 46 1 3.6093 4.0850 -6.8393 47 1 4.6364 2.7426 -5.0516 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821689373.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:28:20 Heat of formation + Delta-G solvation = 49.637464 kcal Electronic energy + Delta-G solvation = -30417.171078 eV Core-core repulsion = 26216.936396 eV Total energy + Delta-G solvation = -4200.234681 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -45.48115 -40.89346 -39.68687 -38.08575 -36.77564 -35.40689 -34.62502 -34.50080 -32.29279 -31.94031 -30.90085 -30.10552 -27.78088 -27.03591 -25.78962 -25.39914 -24.35282 -23.59372 -23.19995 -21.89920 -20.94453 -20.20335 -18.93815 -18.39604 -18.16248 -17.62433 -17.51325 -17.17379 -16.64149 -16.44633 -15.96469 -15.82535 -15.54736 -15.33791 -15.16502 -14.79366 -14.72407 -14.36063 -14.17790 -14.01514 -13.72265 -13.61185 -13.30608 -13.05243 -12.99914 -12.66326 -12.56121 -12.48504 -12.42922 -12.34283 -12.20319 -12.11363 -11.92719 -11.88830 -11.73907 -11.53475 -11.31986 -10.83261 -10.68481 -10.33765 -9.93143 -9.54802 -8.71475 -8.14786 -6.12419 -0.34174 0.14898 0.42985 1.27056 1.37726 1.40129 1.40737 1.52029 2.44991 2.64877 2.75241 2.99414 3.14439 3.21614 3.28348 3.64906 3.87827 3.89891 4.01947 4.15049 4.18810 4.20988 4.27981 4.34738 4.41042 4.46953 4.49102 4.53658 4.59520 4.59916 4.72087 4.83457 4.85144 4.90269 4.95095 5.06921 5.10615 5.34535 5.36703 5.42122 5.53033 5.58703 5.61512 5.71115 5.88710 6.10483 6.42299 6.49812 6.80256 6.90806 6.95599 7.09180 7.48962 9.02389 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016384 B = 0.002355 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.533737 B =11885.618895 C =12042.677213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.396 6.396 3 C 0.025 3.975 4 C 0.059 3.941 5 N -0.527 5.527 6 C 0.162 3.838 7 C -0.486 4.486 8 H 0.032 0.968 9 C 0.006 3.994 10 N -0.958 5.958 11 Si 0.941 3.059 12 H -0.272 1.272 13 H -0.290 1.290 14 H -0.246 1.246 15 C 0.024 3.976 16 C 0.160 3.840 17 H 0.109 0.891 18 O -0.556 6.556 19 C -0.094 4.094 20 C -0.112 4.112 21 C -0.077 4.077 22 C -0.036 4.036 23 C 0.212 3.788 24 N -0.294 5.294 25 N -0.057 5.057 26 N -0.201 5.201 27 H 0.494 0.506 28 N -0.297 5.297 29 C -0.076 4.076 30 C -0.115 4.115 31 H 0.074 0.926 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.056 0.944 37 H 0.099 0.901 38 H 0.032 0.968 39 H 0.009 0.991 40 H 0.260 0.740 41 H 0.047 0.953 42 H 0.073 0.927 43 H 0.382 0.618 44 H 0.148 0.852 45 H 0.142 0.858 46 H 0.144 0.856 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.351 22.202 -18.484 30.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.316 6.316 3 C -0.053 4.053 4 C -0.070 4.070 5 N -0.250 5.250 6 C 0.036 3.964 7 C -0.524 4.524 8 H 0.051 0.949 9 C -0.189 4.189 10 N -0.600 5.600 11 Si 0.766 3.234 12 H -0.198 1.198 13 H -0.217 1.217 14 H -0.170 1.170 15 C -0.104 4.104 16 C 0.101 3.899 17 H 0.126 0.874 18 O -0.363 6.363 19 C -0.095 4.095 20 C -0.130 4.130 21 C -0.097 4.097 22 C -0.040 4.040 23 C -0.068 4.068 24 N -0.167 5.167 25 N -0.052 5.052 26 N -0.052 5.052 27 H 0.353 0.647 28 N -0.149 5.149 29 C -0.096 4.096 30 C -0.132 4.132 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.117 0.883 38 H 0.049 0.951 39 H 0.027 0.973 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.092 0.908 43 H 0.231 0.769 44 H 0.166 0.834 45 H 0.160 0.840 46 H 0.162 0.838 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -9.121 22.660 -18.127 30.418 hybrid contribution -1.093 -1.215 -0.972 1.901 sum -10.213 21.445 -19.099 30.479 Atomic orbital electron populations 1.22857 0.81481 1.02557 1.00664 1.88289 1.19939 1.28296 1.95052 1.23406 0.95699 0.85117 1.01071 1.22225 0.91199 1.00183 0.93350 1.61961 1.58996 1.02635 1.01389 1.20180 0.96003 0.85563 0.94702 1.21177 1.23978 0.94438 1.12820 0.94932 1.25702 0.97970 0.98299 0.96962 1.70067 1.46659 1.09532 1.33763 0.85803 0.80241 0.78290 0.79069 1.19795 1.21664 1.17004 1.22902 0.97854 0.94659 0.95008 1.20756 0.80672 0.92061 0.96430 0.87365 1.86627 1.21631 1.83535 1.44475 1.20804 0.96556 0.96719 0.95456 1.21140 0.95991 0.95375 1.00532 1.21248 0.99089 0.98606 0.90740 1.17408 0.98854 0.97889 0.89819 1.23854 0.95122 0.97342 0.90470 1.76071 1.15064 1.10902 1.14638 1.78855 1.14786 1.17779 0.93790 1.47796 1.20477 1.22644 1.14255 0.64665 1.74902 1.18317 1.14140 1.07537 1.21225 0.94059 0.93718 1.00594 1.21058 1.00669 0.99990 0.91531 0.90748 0.92898 0.93109 0.91939 0.91585 0.92549 0.88278 0.95083 0.97330 0.93073 0.93528 0.90811 0.76873 0.83403 0.83986 0.83783 0.83592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 11.01 113.37 1.25 1.83 16 2 O -0.40 -15.02 7.58 -148.98 -1.13 -16.15 16 3 C 0.02 0.76 5.69 71.98 0.41 1.17 16 4 C 0.06 2.13 5.37 86.30 0.46 2.59 16 5 N -0.53 -20.55 4.70 -900.79 -4.23 -24.78 16 6 C 0.16 7.70 3.39 85.56 0.29 7.99 16 7 C -0.49 -28.37 8.77 25.60 0.22 -28.15 16 8 H 0.03 2.14 7.23 -2.91 -0.02 2.11 16 9 C 0.01 0.36 5.47 84.66 0.46 0.83 16 10 N -0.96 -61.68 13.96 21.45 0.30 -61.38 16 11 Si 0.94 45.77 27.57 68.60 1.89 47.66 16 12 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 13 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 14 H -0.25 -11.18 6.40 99.48 0.64 -10.54 16 15 C 0.02 0.69 4.21 86.30 0.36 1.06 16 16 C 0.16 3.74 3.16 29.85 0.09 3.83 16 17 H 0.11 2.48 6.32 -2.39 -0.02 2.46 16 18 O -0.56 -14.49 13.14 -148.98 -1.96 -16.45 16 19 C -0.09 -1.79 4.98 -19.83 -0.10 -1.89 16 20 C -0.11 -1.94 9.65 22.24 0.21 -1.72 16 21 C -0.08 -1.36 9.70 22.48 0.22 -1.14 16 22 C -0.04 -0.68 5.88 -20.04 -0.12 -0.80 16 23 C 0.21 4.12 7.94 137.38 1.09 5.21 16 24 N -0.29 -6.11 12.23 -52.18 -0.64 -6.75 16 25 N -0.06 -0.95 13.47 37.02 0.50 -0.45 16 26 N -0.20 -2.15 7.90 37.02 0.29 -1.86 16 27 H 0.49 0.26 8.96 -347.54 -3.12 -2.85 16 28 N -0.30 -4.72 12.08 -52.13 -0.63 -5.35 16 29 C -0.08 -1.29 9.70 22.48 0.22 -1.07 16 30 C -0.11 -1.97 9.30 22.24 0.21 -1.76 16 31 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.07 1.69 5.79 -2.39 -0.01 1.68 16 36 H 0.06 2.57 6.33 -2.39 -0.02 2.56 16 37 H 0.10 2.98 6.67 -2.39 -0.02 2.97 16 38 H 0.03 1.51 3.99 -2.39 -0.01 1.50 16 39 H 0.01 0.42 7.73 -2.39 -0.02 0.40 16 40 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 41 H 0.05 1.30 5.71 -2.38 -0.01 1.29 16 42 H 0.07 2.08 8.01 -2.39 -0.02 2.06 16 43 H 0.38 7.56 7.49 -74.06 -0.55 7.01 16 44 H 0.15 1.99 8.03 -2.91 -0.02 1.97 16 45 H 0.14 2.27 7.89 -2.91 -0.02 2.24 16 46 H 0.14 2.04 7.88 -2.91 -0.02 2.01 16 47 H 0.15 1.97 6.77 -2.91 -0.02 1.95 16 Total: -1.00 -79.90 383.14 -3.01 -82.91 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -2.70 Total: 14.62 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: 5.29 Total: -12.02 kcal Atomic # 7 Polarization: -96.17 SS G_CDS: -4.41 Total: -100.58 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: -3.09 Total: -32.60 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 1.89 Total: 47.66 kcal Total: -79.90 -3.01 -82.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821689373.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.547 kcal (2) G-P(sol) polarization free energy of solvation -79.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds