Wall clock time and date at job start Wed Apr 1 2020 05:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47516 * 111.00077 * 2 1 4 4 C 1.55023 * 107.08784 * 237.94720 * 3 2 1 5 5 H 1.09004 * 112.62076 * 216.07824 * 4 3 2 6 6 C 1.52961 * 107.09939 * 92.64394 * 4 3 2 7 7 C 1.52726 * 110.86874 * 194.14638 * 6 4 3 8 8 C 1.53021 * 108.49244 * 63.70188 * 7 6 4 9 9 N 1.46790 * 107.78780 * 302.00025 * 8 7 6 10 10 C 1.34780 * 119.53260 * 231.93867 * 9 8 7 11 11 O 1.21361 * 119.99528 * 8.03462 * 10 9 8 12 12 C 1.49308 * 119.99887 * 188.03800 * 10 9 8 13 13 O 1.21397 * 120.00241 * 7.11330 * 12 10 9 14 14 N 1.34779 * 119.99466 * 187.11618 * 12 10 9 15 15 C 1.40296 * 119.99558 * 180.02562 * 14 12 10 16 16 C 1.40716 * 126.10400 * 0.02562 * 15 14 12 17 17 N 1.30875 * 108.37744 * 179.73732 * 16 15 14 18 18 N 1.40063 * 108.43707 * 0.26400 * 17 16 15 19 19 C 1.37292 * 126.05554 * 179.97438 * 18 17 16 20 20 H 1.08003 * 120.00175 * 180.02562 * 19 18 17 21 21 C 1.39003 * 119.99994 * 0.03261 * 19 18 17 22 22 N 1.31282 * 120.00244 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00121 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47531 * 89.99352 * 23 21 19 25 25 H 1.48497 * 109.47200 * 209.99990 * 23 21 19 26 26 H 1.48506 * 109.47096 * 329.99458 * 23 21 19 27 27 C 1.35790 * 126.09801 * 180.22444 * 15 14 12 28 28 C 1.45035 * 120.93803 * 51.66732 * 9 8 7 29 29 H 1.09004 * 109.86459 * 192.76986 * 28 9 8 30 30 C 1.48103 * 110.99911 * 239.15366 * 2 1 3 31 31 H 1.09002 * 109.46847 * 60.00285 * 1 2 3 32 32 H 1.09002 * 109.46910 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.46881 * 300.00147 * 1 2 3 34 34 H 1.09002 * 109.91331 * 118.58842 * 3 2 1 35 35 H 1.09000 * 110.07507 * 357.39473 * 3 2 1 36 36 H 1.08996 * 109.19595 * 314.50712 * 6 4 3 37 37 H 1.09007 * 109.19518 * 73.83430 * 6 4 3 38 38 H 1.09007 * 109.67835 * 183.55510 * 7 6 4 39 39 H 1.09000 * 109.68263 * 304.09856 * 7 6 4 40 40 H 1.08999 * 109.76995 * 182.38876 * 8 7 6 41 41 H 1.08996 * 109.67342 * 61.56388 * 8 7 6 42 42 H 0.97001 * 120.00231 * 359.97438 * 14 12 10 43 43 H 1.08005 * 125.80941 * 0.02562 * 16 15 14 44 44 H 0.97000 * 120.00275 * 180.02562 * 22 21 19 45 45 H 1.08001 * 126.25061 * 359.96023 * 27 15 14 46 46 H 1.09004 * 110.45593 * 27.00662 * 30 2 1 47 47 H 1.08996 * 110.45466 * 264.44465 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9977 1.3772 0.0000 4 6 2.8951 1.5206 -1.2559 5 1 3.7668 2.1505 -1.0786 6 6 2.0131 2.0698 -2.3785 7 6 2.7016 1.9207 -3.7336 8 6 2.8844 0.4294 -4.0238 9 7 3.6731 -0.1472 -2.9282 10 6 4.7737 -0.8717 -3.2117 11 8 5.1895 -0.9231 -4.3507 12 6 5.4811 -1.6113 -2.1246 13 8 4.9959 -1.6670 -1.0131 14 7 6.6583 -2.2169 -2.3772 15 6 7.3228 -2.9123 -1.3558 16 6 6.8794 -3.0591 -0.0284 17 7 7.7601 -3.7743 0.6241 18 7 8.7994 -4.1064 -0.2542 19 6 9.9119 -4.8492 0.0545 20 1 10.6564 -5.0470 -0.7025 21 6 10.0801 -5.3470 1.3414 22 7 9.1754 -5.1063 2.2618 23 14 11.5935 -6.3583 1.7614 24 1 12.6748 -5.4577 2.2355 25 1 11.2568 -7.3329 2.8300 26 1 12.0521 -7.0884 0.5522 27 6 8.5104 -3.5605 -1.4708 28 6 3.2883 0.0566 -1.5448 29 1 4.1020 -0.2457 -0.8856 30 6 1.9997 -0.7089 -1.1871 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 2.5886 1.5480 0.8999 35 1 1.1770 2.0930 -0.0465 36 1 1.0702 1.5232 -2.3935 37 1 1.8127 3.1251 -2.1932 38 1 2.0855 2.3740 -4.5102 39 1 3.6759 2.4087 -3.7060 40 1 3.4128 0.2996 -4.9682 41 1 1.9102 -0.0567 -4.0741 42 1 7.0458 -2.1726 -3.2653 43 1 5.9654 -2.6546 0.3810 44 1 9.2930 -5.4533 3.1600 45 1 9.1136 -3.6349 -2.3636 46 1 1.2868 -0.6603 -2.0102 47 1 2.2285 -1.7458 -0.9408 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824668213.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:16 Heat of formation + Delta-G solvation = 49.213055 kcal Electronic energy + Delta-G solvation = -31265.015105 eV Core-core repulsion = 27064.762020 eV Total energy + Delta-G solvation = -4200.253085 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.31255 -39.94761 -39.14719 -38.01416 -36.16620 -34.56001 -33.38072 -32.99860 -31.54532 -30.32912 -28.61804 -28.06366 -26.94759 -25.62469 -24.73836 -23.36596 -22.61490 -21.21917 -20.94697 -20.59100 -19.52947 -19.06594 -17.65584 -17.29530 -16.87468 -15.97788 -15.77551 -15.63887 -15.44511 -15.15711 -14.96081 -14.46658 -14.27106 -14.18507 -13.82098 -13.70536 -13.67668 -13.27860 -13.13622 -13.01013 -12.94280 -12.70770 -11.91322 -11.77092 -11.75184 -11.70917 -11.51734 -11.45640 -11.29795 -11.23231 -11.05936 -10.86024 -10.85532 -10.61839 -10.54597 -10.20431 -9.24062 -8.90649 -8.83484 -8.73031 -8.40409 -8.13377 -6.79163 -6.60707 -4.28160 1.58153 2.46063 2.92722 3.03713 3.08715 3.26113 3.54170 3.68232 3.81079 4.03705 4.23651 4.35642 4.48418 4.56571 4.58207 4.67129 4.80618 4.94404 4.97918 5.02051 5.08570 5.12768 5.24306 5.31601 5.33188 5.41336 5.47592 5.58146 5.63189 5.67892 5.72000 5.88334 5.94405 6.01863 6.14828 6.19576 6.34496 6.36310 6.74175 6.77685 6.88227 6.89636 7.00059 7.12755 7.16171 7.68485 7.81706 8.07047 8.17668 8.46323 8.68187 9.30507 9.59479 10.34933 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018558 B = 0.002532 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.435531 B =11056.057534 C =12166.270932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.525 5.525 3 C 0.047 3.953 4 C -0.121 4.121 5 H 0.093 0.907 6 C -0.115 4.115 7 C -0.133 4.133 8 C 0.105 3.895 9 N -0.572 5.572 10 C 0.515 3.485 11 O -0.528 6.528 12 C 0.481 3.519 13 O -0.508 6.508 14 N -0.579 5.579 15 C -0.071 4.071 16 C -0.024 4.024 17 N -0.260 5.260 18 N -0.138 5.138 19 C -0.322 4.322 20 H 0.118 0.882 21 C 0.047 3.953 22 N -0.766 5.766 23 Si 0.936 3.064 24 H -0.270 1.270 25 H -0.275 1.275 26 H -0.263 1.263 27 C -0.077 4.077 28 C 0.099 3.901 29 H 0.163 0.837 30 C 0.042 3.958 31 H 0.023 0.977 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.098 0.902 41 H 0.068 0.932 42 H 0.409 0.591 43 H 0.179 0.821 44 H 0.276 0.724 45 H 0.149 0.851 46 H 0.042 0.958 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.733 12.600 -8.617 20.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.249 5.249 3 C -0.081 4.081 4 C -0.141 4.141 5 H 0.111 0.889 6 C -0.153 4.153 7 C -0.171 4.171 8 C -0.017 4.017 9 N -0.305 5.305 10 C 0.299 3.701 11 O -0.404 6.404 12 C 0.263 3.737 13 O -0.387 6.387 14 N -0.221 5.221 15 C -0.177 4.177 16 C -0.200 4.200 17 N -0.091 5.091 18 N 0.096 4.904 19 C -0.454 4.454 20 H 0.135 0.865 21 C -0.171 4.171 22 N -0.392 5.392 23 Si 0.759 3.241 24 H -0.195 1.195 25 H -0.200 1.200 26 H -0.188 1.188 27 C -0.229 4.229 28 C -0.005 4.005 29 H 0.179 0.821 30 C -0.087 4.087 31 H 0.041 0.959 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.116 0.884 41 H 0.086 0.914 42 H 0.244 0.756 43 H 0.196 0.804 44 H 0.087 0.913 45 H 0.166 0.834 46 H 0.060 0.940 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.459 11.688 -6.624 19.017 hybrid contribution 0.130 0.446 -1.917 1.972 sum -13.330 12.134 -8.541 19.946 Atomic orbital electron populations 1.22553 0.87814 1.02104 1.00250 1.63618 1.07630 1.13813 1.39845 1.23029 0.97692 0.89561 0.97821 1.22744 0.98839 0.97082 0.95472 0.88864 1.21588 0.98339 1.01051 0.94297 1.21798 1.01771 0.95976 0.97518 1.21697 0.95707 0.93202 0.91056 1.47282 1.25477 1.50271 1.07430 1.20352 0.81080 0.79765 0.88922 1.90715 1.65043 1.62357 1.22248 1.19640 0.82729 0.82944 0.88396 1.90448 1.65208 1.59865 1.23190 1.42173 1.18971 1.47847 1.13094 1.17248 0.97858 1.12533 0.90089 1.24170 1.01509 1.03318 0.90954 1.78275 0.96932 1.19303 1.14566 1.44569 1.13385 1.28123 1.04362 1.19920 0.97425 1.30103 0.97958 0.86458 1.25661 0.98906 0.97238 0.95310 1.70203 1.31070 1.35140 1.02833 0.85809 0.79977 0.79197 0.79086 1.19530 1.20033 1.18756 1.21304 0.99650 1.09738 0.92199 1.22825 1.01515 0.93671 0.82466 0.82106 1.23170 0.94956 0.99824 0.90712 0.95862 0.91336 0.91347 0.89993 0.92372 0.92214 0.91621 0.90550 0.91062 0.88389 0.91355 0.75615 0.80411 0.91330 0.83400 0.93960 0.89061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.12 60.07 0.55 0.74 16 2 N -0.52 -5.98 5.45 -239.30 -1.30 -7.29 16 3 C 0.05 0.46 6.26 -2.42 -0.02 0.45 16 4 C -0.12 -1.21 3.59 -88.88 -0.32 -1.53 16 5 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 6 C -0.12 -0.93 4.65 -26.89 -0.13 -1.05 16 7 C -0.13 -1.07 6.09 -26.86 -0.16 -1.24 16 8 C 0.11 1.06 6.17 -3.87 -0.02 1.03 16 9 N -0.57 -7.28 2.74 -166.05 -0.46 -7.74 16 10 C 0.52 7.93 7.69 -11.65 -0.09 7.84 16 11 O -0.53 -8.72 15.83 5.49 0.09 -8.63 16 12 C 0.48 8.52 7.65 -11.65 -0.09 8.43 16 13 O -0.51 -9.73 10.30 5.46 0.06 -9.68 16 14 N -0.58 -10.71 5.45 -10.46 -0.06 -10.77 16 15 C -0.07 -1.61 6.90 -83.92 -0.58 -2.19 16 16 C -0.02 -0.60 10.84 -17.02 -0.18 -0.79 16 17 N -0.26 -7.37 10.39 30.81 0.32 -7.05 16 18 N -0.14 -3.71 3.73 -11.40 -0.04 -3.75 16 19 C -0.32 -8.35 10.25 -14.82 -0.15 -8.50 16 20 H 0.12 2.72 7.83 -52.48 -0.41 2.31 16 21 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 22 N -0.77 -20.98 11.81 55.50 0.66 -20.32 16 23 Si 0.94 18.59 29.55 -169.99 -5.02 13.57 16 24 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 25 H -0.28 -5.44 7.11 56.52 0.40 -5.03 16 26 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 27 C -0.08 -1.80 11.50 -16.38 -0.19 -1.98 16 28 C 0.10 1.24 2.42 -67.46 -0.16 1.08 16 29 H 0.16 2.51 4.48 -54.46 -0.24 2.26 16 30 C 0.04 0.51 5.92 -2.59 -0.02 0.49 16 31 H 0.02 0.19 7.77 -51.93 -0.40 -0.22 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.48 7.20 -51.93 -0.37 0.10 16 36 H 0.06 0.49 6.86 -51.93 -0.36 0.14 16 37 H 0.07 0.46 8.14 -51.92 -0.42 0.03 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.10 1.05 6.93 -51.93 -0.36 0.69 16 41 H 0.07 0.62 7.61 -51.93 -0.40 0.22 16 42 H 0.41 6.57 8.31 -40.82 -0.34 6.23 16 43 H 0.18 4.36 5.92 -52.48 -0.31 4.05 16 44 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 45 H 0.15 2.88 8.06 -52.49 -0.42 2.46 16 46 H 0.04 0.47 6.58 -51.93 -0.34 0.13 16 47 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 372.12 15.07 5.61 5.61 Total: -1.00 -31.08 372.12 -8.29 -39.37 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: -6.47 Total: 12.81 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -1.66 Total: 3.87 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: -0.88 Total: -56.91 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: 0.14 Total: -18.31 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.02 Total: 13.57 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.08 -8.29 -39.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824668213.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.581 kcal (2) G-P(sol) polarization free energy of solvation -31.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds