Wall clock time and date at job start Wed Apr 1 2020 05:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47516 * 111.00077 * 2 1 4 4 C 1.55023 * 107.08784 * 237.94720 * 3 2 1 5 5 H 1.09004 * 112.62076 * 216.07824 * 4 3 2 6 6 C 1.52961 * 107.09939 * 92.64394 * 4 3 2 7 7 C 1.52726 * 110.86874 * 194.14638 * 6 4 3 8 8 C 1.53021 * 108.49244 * 63.70188 * 7 6 4 9 9 N 1.46790 * 107.78780 * 302.00025 * 8 7 6 10 10 C 1.34780 * 119.53260 * 231.93867 * 9 8 7 11 11 O 1.21361 * 119.99528 * 8.03462 * 10 9 8 12 12 C 1.49308 * 119.99887 * 188.03800 * 10 9 8 13 13 O 1.21397 * 120.00241 * 7.11330 * 12 10 9 14 14 N 1.34779 * 119.99466 * 187.11618 * 12 10 9 15 15 C 1.40296 * 119.99558 * 180.02562 * 14 12 10 16 16 C 1.40716 * 126.10400 * 0.02562 * 15 14 12 17 17 N 1.30875 * 108.37744 * 179.73732 * 16 15 14 18 18 N 1.40063 * 108.43707 * 0.26400 * 17 16 15 19 19 C 1.37292 * 126.05554 * 179.97438 * 18 17 16 20 20 H 1.08003 * 120.00175 * 180.02562 * 19 18 17 21 21 C 1.39003 * 119.99994 * 0.03261 * 19 18 17 22 22 N 1.31282 * 120.00244 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00121 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47531 * 89.99352 * 23 21 19 25 25 H 1.48497 * 109.47200 * 209.99990 * 23 21 19 26 26 H 1.48506 * 109.47096 * 329.99458 * 23 21 19 27 27 C 1.35790 * 126.09801 * 180.22444 * 15 14 12 28 28 C 1.45035 * 120.93803 * 51.66732 * 9 8 7 29 29 H 1.09004 * 109.86459 * 192.76986 * 28 9 8 30 30 C 1.48103 * 110.99911 * 239.15366 * 2 1 3 31 31 H 1.09002 * 109.46847 * 60.00285 * 1 2 3 32 32 H 1.09002 * 109.46910 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.46881 * 300.00147 * 1 2 3 34 34 H 1.09002 * 109.91331 * 118.58842 * 3 2 1 35 35 H 1.09000 * 110.07507 * 357.39473 * 3 2 1 36 36 H 1.08996 * 109.19595 * 314.50712 * 6 4 3 37 37 H 1.09007 * 109.19518 * 73.83430 * 6 4 3 38 38 H 1.09007 * 109.67835 * 183.55510 * 7 6 4 39 39 H 1.09000 * 109.68263 * 304.09856 * 7 6 4 40 40 H 1.08999 * 109.76995 * 182.38876 * 8 7 6 41 41 H 1.08996 * 109.67342 * 61.56388 * 8 7 6 42 42 H 0.97001 * 120.00231 * 359.97438 * 14 12 10 43 43 H 1.08005 * 125.80941 * 0.02562 * 16 15 14 44 44 H 0.97000 * 120.00275 * 180.02562 * 22 21 19 45 45 H 1.08001 * 126.25061 * 359.96023 * 27 15 14 46 46 H 1.09004 * 110.45593 * 27.00662 * 30 2 1 47 47 H 1.08996 * 110.45466 * 264.44465 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9977 1.3772 0.0000 4 6 2.8951 1.5206 -1.2559 5 1 3.7668 2.1505 -1.0786 6 6 2.0131 2.0698 -2.3785 7 6 2.7016 1.9207 -3.7336 8 6 2.8844 0.4294 -4.0238 9 7 3.6731 -0.1472 -2.9282 10 6 4.7737 -0.8717 -3.2117 11 8 5.1895 -0.9231 -4.3507 12 6 5.4811 -1.6113 -2.1246 13 8 4.9959 -1.6670 -1.0131 14 7 6.6583 -2.2169 -2.3772 15 6 7.3228 -2.9123 -1.3558 16 6 6.8794 -3.0591 -0.0284 17 7 7.7601 -3.7743 0.6241 18 7 8.7994 -4.1064 -0.2542 19 6 9.9119 -4.8492 0.0545 20 1 10.6564 -5.0470 -0.7025 21 6 10.0801 -5.3470 1.3414 22 7 9.1754 -5.1063 2.2618 23 14 11.5935 -6.3583 1.7614 24 1 12.6748 -5.4577 2.2355 25 1 11.2568 -7.3329 2.8300 26 1 12.0521 -7.0884 0.5522 27 6 8.5104 -3.5605 -1.4708 28 6 3.2883 0.0566 -1.5448 29 1 4.1020 -0.2457 -0.8856 30 6 1.9997 -0.7089 -1.1871 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 2.5886 1.5480 0.8999 35 1 1.1770 2.0930 -0.0465 36 1 1.0702 1.5232 -2.3935 37 1 1.8127 3.1251 -2.1932 38 1 2.0855 2.3740 -4.5102 39 1 3.6759 2.4087 -3.7060 40 1 3.4128 0.2996 -4.9682 41 1 1.9102 -0.0567 -4.0741 42 1 7.0458 -2.1726 -3.2653 43 1 5.9654 -2.6546 0.3810 44 1 9.2930 -5.4533 3.1600 45 1 9.1136 -3.6349 -2.3636 46 1 1.2868 -0.6603 -2.0102 47 1 2.2285 -1.7458 -0.9408 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824668213.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:14 Heat of formation + Delta-G solvation = 26.643728 kcal Electronic energy + Delta-G solvation = -31265.993785 eV Core-core repulsion = 27064.762020 eV Total energy + Delta-G solvation = -4201.231765 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.49534 -41.58053 -40.45782 -39.42102 -37.15178 -36.11106 -35.05924 -34.10163 -32.38121 -32.27200 -29.96848 -29.45666 -27.88127 -27.09309 -26.10159 -24.46531 -23.59986 -22.89049 -22.03580 -21.71508 -21.30064 -20.24380 -19.36375 -18.51167 -18.06863 -17.44756 -17.14830 -16.95014 -16.78930 -16.50807 -15.90705 -15.67281 -15.63947 -15.40551 -15.07488 -14.99028 -14.85688 -14.58629 -14.47973 -14.06206 -13.86294 -13.63782 -13.50539 -13.35472 -12.97290 -12.90237 -12.67627 -12.58139 -12.55695 -12.32424 -12.21872 -12.08339 -11.99857 -11.80907 -11.61961 -11.44586 -11.05335 -10.85410 -10.13482 -10.11295 -9.83532 -9.23903 -8.61343 -8.48067 -6.25759 0.22245 1.22694 1.29550 1.41879 1.58827 1.71345 1.99719 2.10342 2.35164 2.51903 2.80177 3.08369 3.15389 3.36545 3.46484 3.69880 3.84055 3.91576 4.02931 4.20656 4.24266 4.38226 4.40089 4.50364 4.51289 4.53155 4.57160 4.66799 4.69670 4.82861 4.92436 4.94612 4.96910 4.97765 4.99189 5.01327 5.12211 5.15853 5.24638 5.29885 5.37981 5.47581 5.87702 5.92260 5.99763 6.13146 6.21424 6.38995 6.66444 6.73250 7.06107 7.41931 7.64028 8.50973 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018558 B = 0.002532 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.435531 B =11056.057534 C =12166.270932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.548 5.548 3 C 0.049 3.951 4 C -0.116 4.116 5 H 0.092 0.908 6 C -0.109 4.109 7 C -0.126 4.126 8 C 0.100 3.900 9 N -0.561 5.561 10 C 0.520 3.480 11 O -0.539 6.539 12 C 0.482 3.518 13 O -0.522 6.522 14 N -0.580 5.580 15 C -0.056 4.056 16 C -0.044 4.044 17 N -0.307 5.307 18 N -0.163 5.163 19 C -0.353 4.353 20 H 0.141 0.859 21 C -0.005 4.005 22 N -0.820 5.820 23 Si 1.019 2.981 24 H -0.264 1.264 25 H -0.276 1.276 26 H -0.245 1.245 27 C -0.076 4.076 28 C 0.095 3.905 29 H 0.129 0.871 30 C 0.051 3.949 31 H 0.039 0.961 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.064 0.936 37 H 0.086 0.914 38 H 0.105 0.895 39 H 0.063 0.937 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.422 0.578 43 H 0.176 0.824 44 H 0.278 0.722 45 H 0.187 0.813 46 H 0.058 0.942 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.509 14.073 -10.627 22.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.273 5.273 3 C -0.078 4.078 4 C -0.136 4.136 5 H 0.110 0.890 6 C -0.146 4.146 7 C -0.164 4.164 8 C -0.021 4.021 9 N -0.292 5.292 10 C 0.302 3.698 11 O -0.416 6.416 12 C 0.264 3.736 13 O -0.401 6.401 14 N -0.225 5.225 15 C -0.162 4.162 16 C -0.220 4.220 17 N -0.139 5.139 18 N 0.069 4.931 19 C -0.484 4.484 20 H 0.158 0.842 21 C -0.217 4.217 22 N -0.448 5.448 23 Si 0.838 3.162 24 H -0.189 1.189 25 H -0.201 1.201 26 H -0.168 1.168 27 C -0.226 4.226 28 C -0.009 4.009 29 H 0.145 0.855 30 C -0.078 4.078 31 H 0.058 0.942 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.105 0.895 38 H 0.123 0.877 39 H 0.082 0.918 40 H 0.112 0.888 41 H 0.103 0.897 42 H 0.259 0.741 43 H 0.193 0.807 44 H 0.087 0.913 45 H 0.204 0.796 46 H 0.076 0.924 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.279 13.201 -8.670 21.291 hybrid contribution 0.187 0.116 -1.351 1.368 sum -14.091 13.317 -10.021 21.825 Atomic orbital electron populations 1.22590 0.86150 1.02341 1.01529 1.63527 1.09352 1.14834 1.39606 1.23034 0.98264 0.89231 0.97303 1.22718 0.99337 0.94952 0.96572 0.88991 1.21565 0.97734 1.02228 0.93123 1.21794 1.02011 0.94144 0.98431 1.21999 0.95701 0.94801 0.89597 1.47365 1.24507 1.48876 1.08432 1.19800 0.81885 0.80272 0.87795 1.90715 1.65670 1.63172 1.22072 1.20264 0.82247 0.82173 0.88881 1.90488 1.65496 1.59846 1.24282 1.42113 1.19417 1.48126 1.12826 1.17267 0.97507 1.11474 0.89956 1.24246 1.01452 1.03881 0.92412 1.78167 0.98299 1.20864 1.16568 1.44836 1.13683 1.29401 1.05189 1.20640 0.97910 1.30641 0.99240 0.84163 1.26868 1.02151 0.97929 0.94726 1.70375 1.33808 1.37151 1.03421 0.84593 0.75301 0.77206 0.79131 1.18856 1.20136 1.16847 1.21992 0.99918 1.08318 0.92418 1.22654 1.00577 0.96003 0.81695 0.85458 1.22960 0.95042 0.98221 0.91549 0.94233 0.91731 0.90275 0.91055 0.89935 0.91707 0.89505 0.87709 0.91837 0.88846 0.89685 0.74053 0.80700 0.91256 0.79620 0.92398 0.92179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.12 127.69 1.17 1.52 16 2 N -0.55 -12.01 5.45 -911.01 -4.97 -16.97 16 3 C 0.05 0.89 6.26 86.88 0.54 1.43 16 4 C -0.12 -2.10 3.59 -9.67 -0.03 -2.14 16 5 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 6 C -0.11 -1.36 4.65 30.49 0.14 -1.21 16 7 C -0.13 -1.59 6.09 30.51 0.19 -1.41 16 8 C 0.10 1.75 6.17 86.33 0.53 2.28 16 9 N -0.56 -13.68 2.74 -797.62 -2.19 -15.87 16 10 C 0.52 15.79 7.69 87.22 0.67 16.46 16 11 O -0.54 -17.26 15.83 -3.28 -0.05 -17.31 16 12 C 0.48 17.36 7.65 87.22 0.67 18.03 16 13 O -0.52 -20.92 10.30 -3.39 -0.03 -20.95 16 14 N -0.58 -21.57 5.45 -305.33 -1.66 -23.23 16 15 C -0.06 -2.57 6.90 37.82 0.26 -2.31 16 16 C -0.04 -2.36 10.84 85.44 0.93 -1.43 16 17 N -0.31 -18.25 10.39 -56.44 -0.59 -18.83 16 18 N -0.16 -9.00 3.73 -189.98 -0.71 -9.71 16 19 C -0.35 -18.56 10.25 84.02 0.86 -17.70 16 20 H 0.14 6.40 7.83 -2.91 -0.02 6.38 16 21 C 0.00 -0.23 5.50 84.96 0.47 0.23 16 22 N -0.82 -46.75 11.81 21.66 0.26 -46.50 16 23 Si 1.02 38.25 29.55 68.60 2.03 40.28 16 24 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 25 H -0.28 -10.28 7.11 99.48 0.71 -9.57 16 26 H -0.25 -8.39 7.11 99.48 0.71 -7.69 16 27 C -0.08 -3.52 11.50 83.41 0.96 -2.56 16 28 C 0.09 2.35 2.42 46.08 0.11 2.46 16 29 H 0.13 4.13 4.48 -42.42 -0.19 3.94 16 30 C 0.05 1.22 5.92 86.44 0.51 1.73 16 31 H 0.04 0.51 7.77 -2.39 -0.02 0.49 16 32 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.08 1.09 7.20 -2.39 -0.02 1.07 16 36 H 0.06 0.79 6.86 -2.39 -0.02 0.77 16 37 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 38 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 39 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.09 1.79 6.93 -2.39 -0.02 1.77 16 41 H 0.08 1.26 7.61 -2.39 -0.02 1.24 16 42 H 0.42 13.29 8.31 -92.71 -0.77 12.52 16 43 H 0.18 9.14 5.92 -2.91 -0.02 9.13 16 44 H 0.28 14.54 8.31 -92.71 -0.77 13.77 16 45 H 0.19 6.94 8.06 -2.91 -0.02 6.92 16 46 H 0.06 1.18 6.58 -2.38 -0.02 1.16 16 47 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -71.30 372.12 0.13 -71.18 By element: Atomic # 1 Polarization: 42.46 SS G_CDS: 0.07 Total: 42.53 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: 7.97 Total: 15.39 kcal Atomic # 7 Polarization: -121.25 SS G_CDS: -9.85 Total: -131.11 kcal Atomic # 8 Polarization: -38.18 SS G_CDS: -0.09 Total: -38.27 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 2.03 Total: 40.28 kcal Total: -71.30 0.13 -71.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824668213.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.820 kcal (2) G-P(sol) polarization free energy of solvation -71.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds