Wall clock time and date at job start Wed Apr 1 2020 06:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 114.00039 * 2 1 4 4 C 1.53004 * 109.47001 * 180.02562 * 3 2 1 5 5 N 1.46895 * 109.47200 * 67.19646 * 4 3 2 6 6 C 1.46903 * 110.99863 * 290.35186 * 5 4 3 7 7 C 1.50694 * 109.47069 * 299.80148 * 6 5 4 8 8 H 1.07993 * 120.00292 * 354.87090 * 7 6 5 9 9 C 1.37877 * 119.99881 * 174.87240 * 7 6 5 10 10 N 1.31522 * 120.00304 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 120.00335 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46658 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.47298 * 119.99600 * 11 9 7 14 14 H 1.48501 * 109.47318 * 240.00339 * 11 9 7 15 15 C 1.46897 * 110.99844 * 54.30484 * 5 4 3 16 16 C 1.50701 * 109.47093 * 66.04822 * 15 5 4 17 17 C 1.37939 * 119.96786 * 259.97286 * 16 15 5 18 18 C 1.39321 * 119.93421 * 179.97438 * 17 16 15 19 19 C 1.48438 * 120.05875 * 179.97438 * 18 17 16 20 20 N 1.34056 * 126.67210 * 359.69133 * 19 18 17 21 21 N 1.28986 * 107.26463 * 179.83198 * 20 19 18 22 22 N 1.28735 * 108.94747 * 0.43493 * 21 20 19 23 23 H 0.96998 * 125.34566 * 179.74161 * 22 21 20 24 24 N 1.28873 * 109.31815 * 359.72206 * 22 21 20 25 25 C 1.39362 * 119.87979 * 0.02562 * 18 17 16 26 26 C 1.37893 * 119.93847 * 359.75897 * 25 18 17 27 27 C 1.38801 * 119.97120 * 80.00084 * 16 15 5 28 28 O 1.35876 * 119.93619 * 359.97342 * 27 16 15 29 29 C 1.42904 * 116.99975 * 179.97438 * 28 27 16 30 30 H 1.08995 * 109.46808 * 59.99535 * 1 2 3 31 31 H 1.09001 * 109.46839 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46973 * 299.99334 * 1 2 3 33 33 H 1.09002 * 109.46706 * 60.00629 * 3 2 1 34 34 H 1.08991 * 109.47541 * 300.00619 * 3 2 1 35 35 H 1.09007 * 109.47085 * 307.19444 * 4 3 2 36 36 H 1.09003 * 109.47169 * 187.19489 * 4 3 2 37 37 H 1.09000 * 109.47262 * 59.80499 * 6 5 4 38 38 H 1.09000 * 109.47053 * 179.80102 * 6 5 4 39 39 H 0.96991 * 120.00406 * 179.97438 * 10 9 7 40 40 H 1.08994 * 109.47322 * 306.04452 * 15 5 4 41 41 H 1.09002 * 109.46935 * 186.04766 * 15 5 4 42 42 H 1.07998 * 120.02960 * 0.02801 * 17 16 15 43 43 H 1.08007 * 120.02957 * 179.97438 * 25 18 17 44 44 H 1.08002 * 119.97224 * 180.25812 * 26 25 18 45 45 H 1.08996 * 109.47519 * 300.00438 * 29 28 27 46 46 H 1.09007 * 109.46752 * 60.00788 * 29 28 27 47 47 H 1.09000 * 109.47135 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9807 0.6110 -1.2776 6 6 3.5936 -0.8021 -1.3834 7 6 4.2278 -1.5821 -0.2608 8 1 4.9208 -1.0963 0.4101 9 6 3.9232 -2.9159 -0.0901 10 7 3.0796 -3.5077 -0.9073 11 14 4.7098 -3.8830 1.3012 12 1 5.6153 -2.9936 2.0720 13 1 3.6506 -4.4086 2.1994 14 1 5.4886 -5.0154 0.7384 15 6 3.4609 1.3857 -2.4123 16 6 4.0745 2.7621 -2.4041 17 6 3.3630 3.8307 -1.8999 18 6 3.9312 5.1028 -1.8921 19 6 3.1677 6.2549 -1.3507 20 7 1.9270 6.2260 -0.8437 21 7 1.6331 7.4288 -0.4823 22 7 2.6281 8.2006 -0.7497 23 1 2.6599 9.1548 -0.5786 24 7 3.5756 7.5064 -1.2799 25 6 5.2172 5.2918 -2.3947 26 6 5.9257 4.2191 -2.8935 27 6 5.3550 2.9533 -2.9046 28 8 6.0536 1.8989 -3.4008 29 6 7.3654 2.1670 -3.9002 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.6887 1.8462 0.8901 34 1 1.6886 1.8464 -0.8898 35 1 3.8490 0.5364 0.8178 36 1 3.9783 2.1722 0.1281 37 1 2.5090 -0.8876 -1.3179 38 1 3.9324 -1.2010 -2.3396 39 1 2.8657 -4.4461 -0.7875 40 1 2.3775 1.4704 -2.3285 41 1 3.7148 0.8802 -3.3441 42 1 2.3667 3.6813 -1.5106 43 1 5.6599 6.2769 -2.3903 44 1 6.9239 4.3642 -3.2793 45 1 7.3035 2.8872 -4.7160 46 1 7.9821 2.5764 -3.1000 47 1 7.8112 1.2419 -4.2658 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826157812.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:27:53 Heat of formation + Delta-G solvation = 91.450809 kcal Electronic energy + Delta-G solvation = -31290.564834 eV Core-core repulsion = 27092.143316 eV Total energy + Delta-G solvation = -4198.421519 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.54517 -40.25727 -38.10321 -37.39349 -35.66621 -34.42172 -33.46897 -32.51744 -31.35666 -30.06459 -28.85189 -27.46869 -26.85981 -25.76054 -24.89435 -24.18388 -24.07207 -22.56281 -21.81852 -20.99472 -19.48314 -19.12167 -17.84499 -17.24313 -16.43745 -16.22448 -15.92189 -15.84559 -15.56203 -15.52095 -14.66462 -14.46836 -14.19743 -14.05307 -13.93429 -13.69149 -13.29257 -13.00717 -12.82639 -12.71138 -12.27805 -11.92424 -11.86570 -11.68944 -11.59936 -11.39748 -11.39108 -11.26636 -11.01059 -10.95099 -10.89117 -10.74116 -10.53852 -10.45154 -10.41907 -9.96920 -9.66898 -8.99341 -8.83484 -8.78156 -8.18149 -7.93794 -6.88864 -5.78148 -3.74699 0.72625 1.13478 1.36647 2.10186 2.34135 3.41746 3.43928 3.50821 3.55411 3.63923 3.80622 4.11548 4.55275 4.62649 4.78451 4.85404 5.11434 5.13818 5.22733 5.25161 5.31480 5.36623 5.48796 5.58785 5.59236 5.59751 5.73938 5.77975 5.84086 5.94856 5.98080 6.01367 6.13137 6.18137 6.26348 6.30231 6.34558 6.42004 6.44291 6.57820 6.78536 6.94003 7.51201 7.53660 7.89576 7.99602 8.02722 8.04179 8.30835 8.46694 8.81879 9.31173 9.85586 11.33393 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011365 B = 0.003403 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.072726 B = 8225.176967 C = 9916.869296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.343 6.343 3 C 0.022 3.978 4 C 0.062 3.938 5 N -0.520 5.520 6 C 0.183 3.817 7 C -0.486 4.486 8 H 0.057 0.943 9 C 0.057 3.943 10 N -0.898 5.898 11 Si 0.888 3.112 12 H -0.275 1.275 13 H -0.288 1.288 14 H -0.288 1.288 15 C 0.094 3.906 16 C -0.098 4.098 17 C -0.036 4.036 18 C -0.070 4.070 19 C 0.237 3.763 20 N -0.270 5.270 21 N -0.052 5.052 22 N -0.233 5.233 23 H 0.473 0.527 24 N -0.305 5.305 25 C -0.043 4.043 26 C -0.219 4.219 27 C 0.177 3.823 28 O -0.287 6.287 29 C 0.026 3.974 30 H 0.029 0.971 31 H 0.081 0.919 32 H 0.028 0.972 33 H 0.035 0.965 34 H 0.042 0.958 35 H 0.094 0.906 36 H 0.064 0.936 37 H 0.037 0.963 38 H 0.017 0.983 39 H 0.255 0.745 40 H 0.039 0.961 41 H 0.080 0.920 42 H 0.137 0.863 43 H 0.130 0.870 44 H 0.133 0.867 45 H 0.051 0.949 46 H 0.055 0.945 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.968 22.604 -4.251 23.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.261 6.261 3 C -0.057 4.057 4 C -0.067 4.067 5 N -0.243 5.243 6 C 0.059 3.941 7 C -0.525 4.525 8 H 0.075 0.925 9 C -0.143 4.143 10 N -0.538 5.538 11 Si 0.717 3.283 12 H -0.200 1.200 13 H -0.214 1.214 14 H -0.214 1.214 15 C -0.034 4.034 16 C -0.099 4.099 17 C -0.056 4.056 18 C -0.074 4.074 19 C -0.042 4.042 20 N -0.144 5.144 21 N -0.048 5.048 22 N -0.078 5.078 23 H 0.327 0.673 24 N -0.156 5.156 25 C -0.064 4.064 26 C -0.238 4.238 27 C 0.128 3.872 28 O -0.198 6.198 29 C -0.070 4.070 30 H 0.047 0.953 31 H 0.099 0.901 32 H 0.046 0.954 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.112 0.888 36 H 0.082 0.918 37 H 0.055 0.945 38 H 0.035 0.965 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.099 0.901 42 H 0.155 0.845 43 H 0.148 0.852 44 H 0.151 0.849 45 H 0.069 0.931 46 H 0.073 0.927 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.946 22.331 -4.048 22.778 hybrid contribution -0.125 0.328 0.729 0.809 sum 1.820 22.659 -3.320 22.973 Atomic orbital electron populations 1.22668 0.83783 1.02139 0.98325 1.88475 1.17273 1.25721 1.94584 1.23391 0.97574 0.85976 0.98725 1.22195 0.89353 0.99515 0.95608 1.62354 1.58008 1.05092 0.98840 1.20023 0.97110 0.80217 0.96773 1.21077 1.24469 0.94179 1.12817 0.92507 1.24858 0.95454 0.97743 0.96195 1.69971 1.35084 1.11078 1.37711 0.86605 0.79024 0.80036 0.82631 1.19965 1.21430 1.21448 1.20906 0.95932 0.89340 0.97222 1.19313 0.92507 0.96654 1.01419 1.20920 0.99703 0.89807 0.95204 1.16997 0.94297 0.88760 1.07368 1.23696 0.90448 0.90919 0.99179 1.76121 1.12829 1.10843 1.14558 1.78903 1.13349 0.96460 1.16067 1.47691 1.07648 1.13705 1.38779 0.67329 1.74908 1.16574 1.05089 1.19054 1.20780 0.92164 0.98782 0.94671 1.21108 1.01753 0.92118 1.08785 1.19030 0.90972 0.86030 0.91131 1.86305 1.28120 1.31703 1.73709 1.23089 0.82451 1.03238 0.98182 0.95268 0.90073 0.95376 0.94644 0.94002 0.88794 0.91782 0.94500 0.96452 0.93533 0.94337 0.90133 0.84540 0.85202 0.84928 0.93053 0.92653 0.88106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.34 -7.44 7.57 -35.23 -0.27 -7.70 16 3 C 0.02 0.40 5.70 37.16 0.21 0.62 16 4 C 0.06 1.24 5.31 -3.83 -0.02 1.22 16 5 N -0.52 -11.25 4.74 -237.52 -1.13 -12.37 16 6 C 0.18 4.80 4.28 -4.98 -0.02 4.78 16 7 C -0.49 -13.85 8.22 -34.44 -0.28 -14.13 16 8 H 0.06 1.62 6.97 -52.49 -0.37 1.26 16 9 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 10 N -0.90 -27.16 13.29 55.43 0.74 -26.43 16 11 Si 0.89 22.34 29.54 -169.99 -5.02 17.32 16 12 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 14 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 15 C 0.09 1.73 4.42 -4.98 -0.02 1.71 16 16 C -0.10 -1.53 4.59 -104.52 -0.48 -2.01 16 17 C -0.04 -0.51 8.45 -39.29 -0.33 -0.84 16 18 C -0.07 -0.92 5.88 -104.87 -0.62 -1.54 16 19 C 0.24 3.04 7.93 -156.30 -1.24 1.80 16 20 N -0.27 -3.67 12.23 32.15 0.39 -3.28 16 21 N -0.05 -0.59 13.47 60.35 0.81 0.22 16 22 N -0.23 -1.90 7.90 60.35 0.48 -1.42 16 23 H 0.47 1.43 8.96 -340.36 -3.05 -1.62 16 24 N -0.30 -3.26 12.08 32.17 0.39 -2.87 16 25 C -0.04 -0.50 9.69 -39.29 -0.38 -0.88 16 26 C -0.22 -2.57 9.02 -39.48 -0.36 -2.92 16 27 C 0.18 2.57 6.66 -39.15 -0.26 2.31 16 28 O -0.29 -4.38 9.71 -19.35 -0.19 -4.57 16 29 C 0.03 0.26 9.81 101.05 0.99 1.25 16 30 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.04 0.72 4.43 -51.93 -0.23 0.49 16 35 H 0.09 2.12 6.33 -51.93 -0.33 1.79 16 36 H 0.06 1.16 7.00 -51.93 -0.36 0.79 16 37 H 0.04 1.04 5.29 -51.93 -0.27 0.76 16 38 H 0.02 0.50 8.05 -51.93 -0.42 0.08 16 39 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 40 H 0.04 0.70 5.57 -51.93 -0.29 0.41 16 41 H 0.08 1.54 7.72 -51.93 -0.40 1.14 16 42 H 0.14 1.95 6.60 -52.49 -0.35 1.60 16 43 H 0.13 1.24 7.88 -52.48 -0.41 0.83 16 44 H 0.13 1.20 6.28 -52.49 -0.33 0.87 16 45 H 0.05 0.41 7.67 -51.93 -0.40 0.02 16 46 H 0.05 0.51 7.64 -51.93 -0.40 0.11 16 47 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 383.69 15.07 5.78 5.78 Total: -1.00 -34.86 383.69 -8.66 -43.52 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -8.85 Total: -2.75 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: -1.79 Total: -5.46 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: 1.68 Total: -46.15 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: -0.45 Total: -12.27 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.86 -8.66 -43.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826157812.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.973 kcal (2) G-P(sol) polarization free energy of solvation -34.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds