Wall clock time and date at job start Wed Apr 1 2020 06:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 114.00039 * 2 1 4 4 C 1.53004 * 109.47001 * 180.02562 * 3 2 1 5 5 N 1.46895 * 109.47200 * 67.19646 * 4 3 2 6 6 C 1.46903 * 110.99863 * 290.35186 * 5 4 3 7 7 C 1.50694 * 109.47069 * 299.80148 * 6 5 4 8 8 H 1.07993 * 120.00292 * 354.87090 * 7 6 5 9 9 C 1.37877 * 119.99881 * 174.87240 * 7 6 5 10 10 N 1.31522 * 120.00304 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 120.00335 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46658 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.47298 * 119.99600 * 11 9 7 14 14 H 1.48501 * 109.47318 * 240.00339 * 11 9 7 15 15 C 1.46897 * 110.99844 * 54.30484 * 5 4 3 16 16 C 1.50701 * 109.47093 * 66.04822 * 15 5 4 17 17 C 1.37939 * 119.96786 * 259.97286 * 16 15 5 18 18 C 1.39321 * 119.93421 * 179.97438 * 17 16 15 19 19 C 1.48438 * 120.05875 * 179.97438 * 18 17 16 20 20 N 1.34056 * 126.67210 * 359.69133 * 19 18 17 21 21 N 1.28986 * 107.26463 * 179.83198 * 20 19 18 22 22 N 1.28735 * 108.94747 * 0.43493 * 21 20 19 23 23 H 0.96998 * 125.34566 * 179.74161 * 22 21 20 24 24 N 1.28873 * 109.31815 * 359.72206 * 22 21 20 25 25 C 1.39362 * 119.87979 * 0.02562 * 18 17 16 26 26 C 1.37893 * 119.93847 * 359.75897 * 25 18 17 27 27 C 1.38801 * 119.97120 * 80.00084 * 16 15 5 28 28 O 1.35876 * 119.93619 * 359.97342 * 27 16 15 29 29 C 1.42904 * 116.99975 * 179.97438 * 28 27 16 30 30 H 1.08995 * 109.46808 * 59.99535 * 1 2 3 31 31 H 1.09001 * 109.46839 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46973 * 299.99334 * 1 2 3 33 33 H 1.09002 * 109.46706 * 60.00629 * 3 2 1 34 34 H 1.08991 * 109.47541 * 300.00619 * 3 2 1 35 35 H 1.09007 * 109.47085 * 307.19444 * 4 3 2 36 36 H 1.09003 * 109.47169 * 187.19489 * 4 3 2 37 37 H 1.09000 * 109.47262 * 59.80499 * 6 5 4 38 38 H 1.09000 * 109.47053 * 179.80102 * 6 5 4 39 39 H 0.96991 * 120.00406 * 179.97438 * 10 9 7 40 40 H 1.08994 * 109.47322 * 306.04452 * 15 5 4 41 41 H 1.09002 * 109.46935 * 186.04766 * 15 5 4 42 42 H 1.07998 * 120.02960 * 0.02801 * 17 16 15 43 43 H 1.08007 * 120.02957 * 179.97438 * 25 18 17 44 44 H 1.08002 * 119.97224 * 180.25812 * 26 25 18 45 45 H 1.08996 * 109.47519 * 300.00438 * 29 28 27 46 46 H 1.09007 * 109.46752 * 60.00788 * 29 28 27 47 47 H 1.09000 * 109.47135 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9807 0.6110 -1.2776 6 6 3.5936 -0.8021 -1.3834 7 6 4.2278 -1.5821 -0.2608 8 1 4.9208 -1.0963 0.4101 9 6 3.9232 -2.9159 -0.0901 10 7 3.0796 -3.5077 -0.9073 11 14 4.7098 -3.8830 1.3012 12 1 5.6153 -2.9936 2.0720 13 1 3.6506 -4.4086 2.1994 14 1 5.4886 -5.0154 0.7384 15 6 3.4609 1.3857 -2.4123 16 6 4.0745 2.7621 -2.4041 17 6 3.3630 3.8307 -1.8999 18 6 3.9312 5.1028 -1.8921 19 6 3.1677 6.2549 -1.3507 20 7 1.9270 6.2260 -0.8437 21 7 1.6331 7.4288 -0.4823 22 7 2.6281 8.2006 -0.7497 23 1 2.6599 9.1548 -0.5786 24 7 3.5756 7.5064 -1.2799 25 6 5.2172 5.2918 -2.3947 26 6 5.9257 4.2191 -2.8935 27 6 5.3550 2.9533 -2.9046 28 8 6.0536 1.8989 -3.4008 29 6 7.3654 2.1670 -3.9002 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.6887 1.8462 0.8901 34 1 1.6886 1.8464 -0.8898 35 1 3.8490 0.5364 0.8178 36 1 3.9783 2.1722 0.1281 37 1 2.5090 -0.8876 -1.3179 38 1 3.9324 -1.2010 -2.3396 39 1 2.8657 -4.4461 -0.7875 40 1 2.3775 1.4704 -2.3285 41 1 3.7148 0.8802 -3.3441 42 1 2.3667 3.6813 -1.5106 43 1 5.6599 6.2769 -2.3903 44 1 6.9239 4.3642 -3.2793 45 1 7.3035 2.8872 -4.7160 46 1 7.9821 2.5764 -3.1000 47 1 7.8112 1.2419 -4.2658 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826157812.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:27:52 Heat of formation + Delta-G solvation = 65.447953 kcal Electronic energy + Delta-G solvation = -31291.692403 eV Core-core repulsion = 27092.143316 eV Total energy + Delta-G solvation = -4199.549087 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -45.39216 -41.33487 -39.59892 -38.47755 -37.25056 -35.29543 -34.75346 -34.22347 -32.65218 -31.08216 -30.48816 -28.83788 -28.11907 -27.20448 -26.15591 -25.44094 -25.02976 -24.30865 -22.91705 -22.24092 -20.89631 -20.06195 -18.85904 -18.32665 -18.07856 -17.60302 -17.41430 -17.08084 -16.82240 -16.62939 -16.45455 -15.82829 -15.58191 -15.44527 -15.10893 -14.97343 -14.54833 -14.33628 -13.92687 -13.78674 -13.66178 -13.47642 -13.15093 -12.94093 -12.89532 -12.78997 -12.59287 -12.53221 -12.43866 -12.37986 -12.29440 -12.24260 -12.15176 -11.87271 -11.69114 -11.51222 -11.33771 -11.03773 -10.53035 -10.25517 -9.88148 -8.97451 -8.65242 -8.00877 -6.04913 -0.18916 0.24334 0.34602 1.36941 1.43822 1.44319 1.48574 1.56754 2.49293 2.50786 2.73790 2.77695 3.08626 3.21953 3.32995 3.62373 3.77785 3.89682 4.17737 4.20251 4.24796 4.29926 4.38559 4.44808 4.47105 4.51152 4.52166 4.55646 4.59385 4.62577 4.74095 4.75941 4.84397 4.86443 4.90109 5.06885 5.19525 5.28400 5.38751 5.42792 5.52801 5.67499 5.74902 5.77320 5.85415 6.27352 6.49146 6.51738 6.56596 6.85557 7.10737 7.18134 7.59910 9.10529 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011365 B = 0.003403 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.072726 B = 8225.176967 C = 9916.869296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.387 6.387 3 C 0.027 3.973 4 C 0.068 3.932 5 N -0.526 5.526 6 C 0.201 3.799 7 C -0.495 4.495 8 H 0.051 0.949 9 C 0.005 3.995 10 N -0.931 5.931 11 Si 0.955 3.045 12 H -0.267 1.267 13 H -0.284 1.284 14 H -0.282 1.282 15 C 0.104 3.896 16 C -0.119 4.119 17 C -0.036 4.036 18 C -0.073 4.073 19 C 0.223 3.777 20 N -0.301 5.301 21 N -0.059 5.059 22 N -0.201 5.201 23 H 0.494 0.506 24 N -0.295 5.295 25 C -0.031 4.031 26 C -0.207 4.207 27 C 0.164 3.836 28 O -0.324 6.324 29 C 0.017 3.983 30 H 0.043 0.957 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.086 0.914 37 H 0.020 0.980 38 H -0.019 1.019 39 H 0.257 0.743 40 H 0.037 0.963 41 H 0.061 0.939 42 H 0.131 0.869 43 H 0.157 0.843 44 H 0.165 0.835 45 H 0.076 0.924 46 H 0.068 0.932 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.160 25.583 -3.593 26.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.306 6.306 3 C -0.051 4.051 4 C -0.060 4.060 5 N -0.249 5.249 6 C 0.076 3.924 7 C -0.534 4.534 8 H 0.069 0.931 9 C -0.192 4.192 10 N -0.573 5.573 11 Si 0.781 3.219 12 H -0.192 1.192 13 H -0.210 1.210 14 H -0.208 1.208 15 C -0.024 4.024 16 C -0.120 4.120 17 C -0.057 4.057 18 C -0.077 4.077 19 C -0.057 4.057 20 N -0.173 5.173 21 N -0.054 5.054 22 N -0.052 5.052 23 H 0.353 0.647 24 N -0.148 5.148 25 C -0.052 4.052 26 C -0.225 4.225 27 C 0.116 3.884 28 O -0.236 6.236 29 C -0.077 4.077 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.104 0.896 37 H 0.037 0.963 38 H -0.001 1.001 39 H 0.066 0.934 40 H 0.055 0.945 41 H 0.080 0.920 42 H 0.149 0.851 43 H 0.175 0.825 44 H 0.182 0.818 45 H 0.095 0.905 46 H 0.087 0.913 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.134 25.357 -3.383 25.773 hybrid contribution -0.482 -0.411 0.482 0.796 sum 2.652 24.946 -2.902 25.253 Atomic orbital electron populations 1.22777 0.81825 1.02261 1.00187 1.88385 1.19638 1.27600 1.94930 1.23366 0.96290 0.85211 1.00246 1.22104 0.90792 0.99546 0.93599 1.62200 1.58683 1.03260 1.00722 1.19599 0.95623 0.83005 0.94200 1.21318 1.24247 0.94725 1.13088 0.93073 1.25674 0.96013 0.98819 0.98673 1.70101 1.36397 1.11410 1.39414 0.85555 0.78209 0.78545 0.79559 1.19172 1.20993 1.20780 1.20736 0.95928 0.90684 0.95015 1.19038 0.93745 0.95111 1.04150 1.20801 0.99430 0.90167 0.95274 1.17083 0.94970 0.88349 1.07317 1.23658 0.90508 0.91479 1.00039 1.76107 1.13561 1.11980 1.15701 1.78852 1.13924 0.96254 1.16401 1.47765 1.06355 1.14533 1.36545 0.64728 1.74860 1.16798 1.04396 1.18760 1.21084 0.91276 0.99839 0.92952 1.21384 1.02847 0.90644 1.07624 1.19193 0.90719 0.87094 0.91440 1.86255 1.30179 1.32996 1.74154 1.23365 0.80615 1.04406 0.99357 0.93806 0.90918 0.92963 0.92527 0.92781 0.91716 0.89597 0.96287 1.00107 0.93435 0.94524 0.92038 0.85089 0.82534 0.81790 0.90529 0.91347 0.87771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.90 11.01 113.37 1.25 2.15 16 2 O -0.39 -17.19 7.57 -148.98 -1.13 -18.32 16 3 C 0.03 1.00 5.70 71.98 0.41 1.41 16 4 C 0.07 2.78 5.31 86.31 0.46 3.24 16 5 N -0.53 -23.70 4.74 -905.37 -4.29 -27.99 16 6 C 0.20 11.14 4.28 85.55 0.37 11.51 16 7 C -0.50 -29.17 8.22 25.60 0.21 -28.96 16 8 H 0.05 3.01 6.97 -2.91 -0.02 2.99 16 9 C 0.01 0.31 5.46 84.65 0.46 0.77 16 10 N -0.93 -58.10 13.29 21.45 0.28 -57.82 16 11 Si 0.95 46.66 29.54 68.60 2.03 48.69 16 12 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 13 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 14 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 15 C 0.10 4.01 4.42 85.56 0.38 4.39 16 16 C -0.12 -3.75 4.59 -19.80 -0.09 -3.84 16 17 C -0.04 -1.00 8.45 22.46 0.19 -0.81 16 18 C -0.07 -1.78 5.88 -20.03 -0.12 -1.90 16 19 C 0.22 5.23 7.93 137.37 1.09 6.32 16 20 N -0.30 -7.72 12.23 -52.19 -0.64 -8.36 16 21 N -0.06 -1.21 13.47 37.02 0.50 -0.71 16 22 N -0.20 -2.69 7.90 37.02 0.29 -2.40 16 23 H 0.49 1.35 8.96 -347.53 -3.12 -1.77 16 24 N -0.30 -5.40 12.08 -52.14 -0.63 -6.03 16 25 C -0.03 -0.62 9.69 22.46 0.22 -0.40 16 26 C -0.21 -4.26 9.02 22.33 0.20 -4.06 16 27 C 0.16 4.64 6.66 22.55 0.15 4.79 16 28 O -0.32 -9.88 9.71 -92.16 -0.90 -10.77 16 29 C 0.02 0.32 9.81 113.37 1.11 1.43 16 30 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 32 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.05 1.88 4.43 -2.39 -0.01 1.87 16 35 H 0.06 3.01 6.33 -2.38 -0.02 2.99 16 36 H 0.09 3.09 7.00 -2.39 -0.02 3.08 16 37 H 0.02 1.15 5.29 -2.39 -0.01 1.14 16 38 H -0.02 -1.17 8.05 -2.39 -0.02 -1.19 16 39 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 40 H 0.04 1.40 5.57 -2.39 -0.01 1.39 16 41 H 0.06 2.54 7.72 -2.39 -0.02 2.52 16 42 H 0.13 3.72 6.60 -2.91 -0.02 3.70 16 43 H 0.16 2.28 7.88 -2.91 -0.02 2.26 16 44 H 0.16 2.29 6.28 -2.91 -0.02 2.27 16 45 H 0.08 1.04 7.67 -2.39 -0.02 1.02 16 46 H 0.07 1.10 7.64 -2.38 -0.02 1.08 16 47 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -78.09 383.69 -0.28 -78.37 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -2.09 Total: 9.31 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: 6.29 Total: -3.97 kcal Atomic # 7 Polarization: -98.83 SS G_CDS: -4.48 Total: -103.31 kcal Atomic # 8 Polarization: -27.07 SS G_CDS: -2.02 Total: -29.09 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -78.09 -0.28 -78.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826157812.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.823 kcal (2) G-P(sol) polarization free energy of solvation -78.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds