Wall clock time and date at job start Wed Apr 1 2020 05:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42910 * 109.47268 * 2 1 4 4 C 1.35862 * 117.00044 * 179.97438 * 3 2 1 5 5 C 1.38827 * 119.94139 * 179.97438 * 4 3 2 6 6 C 1.37915 * 120.06475 * 179.97438 * 5 4 3 7 7 C 1.39337 * 119.93884 * 0.02562 * 6 5 4 8 8 C 1.48436 * 120.06395 * 180.02562 * 7 6 5 9 9 N 1.34062 * 126.67041 * 359.68549 * 8 7 6 10 10 N 1.28985 * 107.26236 * 179.86817 * 9 8 7 11 11 N 1.28733 * 108.94841 * 0.39820 * 10 9 8 12 12 C 1.46499 * 125.34104 * 179.70676 * 11 10 9 13 13 N 1.46504 * 109.47158 * 270.04734 * 12 11 10 14 14 C 1.36946 * 119.99571 * 269.82788 * 13 12 11 15 15 H 1.07998 * 119.99496 * 325.84594 * 14 13 12 16 16 C 1.38810 * 119.99858 * 145.84846 * 14 13 12 17 17 N 1.31626 * 119.99896 * 336.79742 * 16 14 13 18 18 Si 1.86797 * 119.99830 * 156.80032 * 16 14 13 19 19 H 1.48501 * 109.47207 * 89.99872 * 18 16 14 20 20 H 1.48500 * 109.46930 * 209.99927 * 18 16 14 21 21 H 1.48501 * 109.46931 * 329.99649 * 18 16 14 22 22 C 1.46491 * 120.00295 * 89.82737 * 13 12 11 23 23 C 1.53002 * 109.46981 * 90.00226 * 22 13 12 24 24 O 1.42899 * 109.47563 * 64.99830 * 23 22 13 25 25 C 1.42902 * 114.00011 * 180.02562 * 24 23 22 26 26 N 1.28875 * 109.31817 * 359.74701 * 11 10 9 27 27 C 1.39342 * 119.87798 * 0.27330 * 7 6 5 28 28 C 1.37922 * 119.93715 * 359.42468 * 27 7 6 29 29 H 1.08996 * 109.47540 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47443 * 300.00529 * 1 2 3 31 31 H 1.09005 * 109.46923 * 60.00062 * 1 2 3 32 32 H 1.08997 * 109.47443 * 239.99471 * 2 1 3 33 33 H 1.09000 * 109.46830 * 119.99473 * 2 1 3 34 34 H 1.08003 * 119.96591 * 359.97438 * 5 4 3 35 35 H 1.08002 * 120.02804 * 180.02562 * 6 5 4 36 36 H 1.09006 * 109.46856 * 30.04353 * 12 11 10 37 37 H 1.08997 * 109.47266 * 150.04141 * 12 11 10 38 38 H 0.96993 * 119.99496 * 180.02562 * 17 16 14 39 39 H 1.09000 * 109.47120 * 209.99736 * 22 13 12 40 40 H 1.08997 * 109.47249 * 329.99992 * 22 13 12 41 41 H 1.09005 * 109.47072 * 185.00104 * 23 22 13 42 42 H 1.09007 * 109.47126 * 304.99575 * 23 22 13 43 43 H 1.08997 * 109.47141 * 60.00191 * 25 24 23 44 44 H 1.09003 * 109.46508 * 180.02562 * 25 24 23 45 45 H 1.08998 * 109.46715 * 299.99489 * 25 24 23 46 46 H 1.07996 * 120.03368 * 179.70619 * 27 7 6 47 47 H 1.07999 * 119.96984 * 180.27953 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3532 1.5253 0.0005 5 6 3.8826 2.8087 0.0000 6 6 5.2495 2.9924 0.0011 7 6 6.0994 1.8883 0.0022 8 6 7.5710 2.0827 0.0039 9 7 8.2239 3.2536 -0.0013 10 7 9.4861 2.9880 0.0054 11 7 9.6445 1.7105 0.0060 12 6 10.9347 1.0165 0.0067 13 7 11.3657 0.7856 -1.3743 14 6 11.0083 -0.3685 -2.0192 15 1 10.9245 -1.2923 -1.4661 16 6 10.7538 -0.3508 -3.3837 17 7 10.4053 0.7731 -3.9736 18 14 10.9058 -1.9219 -4.3825 19 1 9.5985 -2.6261 -4.3996 20 1 11.3062 -1.5877 -5.7729 21 1 11.9336 -2.8009 -3.7691 22 6 12.1790 1.7891 -2.0654 23 6 13.6616 1.4979 -1.8246 24 8 14.0064 0.2500 -2.4295 25 6 15.3769 -0.1183 -2.2617 26 7 8.4900 1.1377 0.0051 27 6 5.5655 0.6012 -0.0036 28 6 4.1978 0.4234 0.0016 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 3.2233 3.6642 -0.0012 35 1 5.6606 3.9911 0.0011 36 1 11.6759 1.6282 0.5212 37 1 10.8328 0.0605 0.5202 38 1 10.2272 0.7853 -4.9270 39 1 11.9705 1.7521 -3.1347 40 1 11.9364 2.7801 -1.6820 41 1 14.2640 2.2932 -2.2635 42 1 13.8524 1.4470 -0.7526 43 1 15.6028 -0.2028 -1.1987 44 1 15.5580 -1.0762 -2.7493 45 1 16.0152 0.6434 -2.7094 46 1 6.2219 -0.2563 -0.0076 47 1 3.7834 -0.5739 0.0017 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840154023.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:07 Heat of formation + Delta-G solvation = 93.350502 kcal Electronic energy + Delta-G solvation = -30062.843229 eV Core-core repulsion = 25864.504087 eV Total energy + Delta-G solvation = -4198.339142 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -43.11257 -40.05811 -37.60221 -37.44038 -35.86173 -33.42711 -32.63302 -31.84148 -31.40322 -30.85581 -29.53073 -28.75777 -26.31200 -25.84364 -24.32969 -23.69180 -23.32536 -22.40249 -21.42927 -20.85372 -20.44841 -18.28757 -17.36008 -16.85787 -16.31696 -16.21693 -15.89689 -15.70171 -15.54067 -15.21729 -14.67041 -14.37164 -14.17369 -13.75371 -13.73317 -13.54085 -13.46474 -13.30806 -13.00643 -12.70962 -12.33534 -12.16068 -12.02335 -11.89547 -11.84344 -11.57656 -11.13454 -11.07689 -11.01668 -10.92551 -10.82766 -10.70923 -10.56431 -10.25480 -10.02272 -9.98604 -9.90391 -9.61792 -9.01109 -8.90105 -8.80385 -7.78056 -7.21630 -6.10293 -3.66642 1.24475 1.49013 2.34475 3.06172 3.11144 3.14393 3.31537 3.35391 3.41360 4.09983 4.27590 4.49233 4.51087 4.70683 4.71784 4.90490 4.93815 4.98352 5.04312 5.18569 5.20090 5.27677 5.48194 5.54395 5.55006 5.61918 5.67909 5.72739 5.78964 5.83912 5.88594 5.90992 6.00661 6.01594 6.10869 6.21003 6.28780 6.39074 6.43651 6.62652 6.77016 6.81420 6.86580 7.28069 7.39870 7.41321 7.56886 7.83611 8.14911 8.76321 9.39609 9.40802 9.85565 10.91043 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014724 B = 0.002559 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.237551 B =10941.043538 C =12244.823269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 O -0.318 6.318 4 C 0.131 3.869 5 C -0.155 4.155 6 C -0.047 4.047 7 C -0.024 4.024 8 C 0.173 3.827 9 N -0.304 5.304 10 N -0.087 5.087 11 N -0.115 5.115 12 C 0.326 3.674 13 N -0.525 5.525 14 C -0.266 4.266 15 H 0.075 0.925 16 C 0.034 3.966 17 N -0.871 5.871 18 Si 0.912 3.088 19 H -0.285 1.285 20 H -0.287 1.287 21 H -0.272 1.272 22 C 0.125 3.875 23 C 0.053 3.947 24 O -0.356 6.356 25 C 0.030 3.970 26 N -0.289 5.289 27 C -0.045 4.045 28 C -0.211 4.211 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.133 0.867 35 H 0.140 0.860 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.262 0.738 39 H 0.114 0.886 40 H 0.055 0.945 41 H 0.035 0.965 42 H 0.032 0.968 43 H 0.031 0.969 44 H 0.076 0.924 45 H 0.028 0.972 46 H 0.136 0.864 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.674 -0.833 7.865 11.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 O -0.232 6.232 4 C 0.085 3.915 5 C -0.174 4.174 6 C -0.067 4.067 7 C -0.028 4.028 8 C -0.106 4.106 9 N -0.174 5.174 10 N -0.079 5.079 11 N -0.039 5.039 12 C 0.121 3.879 13 N -0.241 5.241 14 C -0.396 4.396 15 H 0.093 0.907 16 C -0.170 4.170 17 N -0.510 5.510 18 Si 0.741 3.259 19 H -0.212 1.212 20 H -0.213 1.213 21 H -0.197 1.197 22 C 0.000 4.000 23 C -0.026 4.026 24 O -0.274 6.274 25 C -0.068 4.068 26 N -0.141 5.141 27 C -0.065 4.065 28 C -0.229 4.229 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.151 0.849 35 H 0.158 0.842 36 H 0.111 0.889 37 H 0.119 0.881 38 H 0.072 0.928 39 H 0.131 0.869 40 H 0.073 0.927 41 H 0.053 0.947 42 H 0.050 0.950 43 H 0.049 0.951 44 H 0.094 0.906 45 H 0.046 0.954 46 H 0.154 0.846 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.228 -0.470 7.548 10.461 hybrid contribution 0.081 -1.093 -0.619 1.259 sum -7.146 -1.563 6.929 10.076 Atomic orbital electron populations 1.21769 0.92899 1.02753 1.03433 1.22780 0.95697 0.82174 1.01606 1.86036 1.19273 1.29172 1.88680 1.19073 0.81996 0.94228 0.96181 1.20276 0.94719 0.94724 1.07632 1.20989 0.91520 0.99022 0.95184 1.17241 0.86192 0.93708 1.05621 1.23388 0.95035 0.86216 1.05992 1.75739 0.97454 1.24495 1.19743 1.78588 1.12097 1.00750 1.16507 1.53894 1.08549 1.02797 1.38709 1.23269 0.77495 0.95812 0.91359 1.44927 1.49922 1.18782 1.10464 1.19075 1.44041 0.85398 0.91086 0.90725 1.25199 0.96107 0.97298 0.98397 1.69973 1.43233 1.26732 1.11090 0.86168 0.78046 0.82565 0.79163 1.21214 1.21279 1.19653 1.21398 0.85643 0.89727 1.03218 1.23202 0.98787 0.85293 0.95337 1.88215 1.23966 1.38517 1.76701 1.22649 0.84902 0.99841 0.99361 1.74781 0.92120 1.27385 1.19839 1.21023 0.94254 0.96730 0.94501 1.21108 0.93829 0.98024 1.09968 0.90465 0.91598 0.91554 0.91891 0.91973 0.84921 0.84215 0.88940 0.88101 0.92849 0.86858 0.92717 0.94727 0.95009 0.95079 0.90565 0.95351 0.84588 0.85278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 10.28 37.15 0.38 -0.65 16 2 C 0.05 0.47 5.46 37.15 0.20 0.67 16 3 O -0.32 -3.90 10.13 -19.31 -0.20 -4.09 16 4 C 0.13 1.79 6.69 -39.14 -0.26 1.53 16 5 C -0.15 -2.12 9.97 -39.48 -0.39 -2.51 16 6 C -0.05 -0.73 9.70 -39.29 -0.38 -1.11 16 7 C -0.02 -0.43 5.88 -104.88 -0.62 -1.05 16 8 C 0.17 3.68 7.93 -156.30 -1.24 2.44 16 9 N -0.30 -6.71 12.23 32.15 0.39 -6.32 16 10 N -0.09 -1.94 13.23 60.35 0.80 -1.14 16 11 N -0.11 -2.51 4.23 -13.46 -0.06 -2.57 16 12 C 0.33 6.39 7.12 -63.75 -0.45 5.94 16 13 N -0.53 -11.93 2.67 -176.95 -0.47 -12.40 16 14 C -0.27 -6.73 8.98 -15.06 -0.14 -6.86 16 15 H 0.08 1.88 7.93 -52.49 -0.42 1.46 16 16 C 0.03 0.89 4.94 -17.43 -0.09 0.80 16 17 N -0.87 -24.24 11.34 55.49 0.63 -23.61 16 18 Si 0.91 21.18 29.61 -169.99 -5.03 16.14 16 19 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 22 C 0.13 2.73 5.72 -4.05 -0.02 2.70 16 23 C 0.05 0.96 6.28 37.16 0.23 1.19 16 24 O -0.36 -7.14 10.18 -35.23 -0.36 -7.50 16 25 C 0.03 0.45 11.01 101.05 1.11 1.56 16 26 N -0.29 -6.45 11.85 32.17 0.38 -6.07 16 27 C -0.04 -0.72 9.69 -39.29 -0.38 -1.10 16 28 C -0.21 -2.87 9.02 -39.48 -0.36 -3.22 16 29 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.54 7.66 -51.93 -0.40 0.14 16 33 H 0.06 0.50 7.65 -51.93 -0.40 0.10 16 34 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16 35 H 0.14 2.08 7.88 -52.49 -0.41 1.66 16 36 H 0.09 1.52 8.07 -51.93 -0.42 1.11 16 37 H 0.10 1.84 8.04 -51.93 -0.42 1.42 16 38 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.11 2.89 5.34 -51.93 -0.28 2.61 16 40 H 0.05 1.15 8.07 -51.93 -0.42 0.73 16 41 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 45 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.14 2.21 7.88 -52.49 -0.41 1.80 16 47 H 0.13 1.42 6.28 -52.49 -0.33 1.09 16 LS Contribution 401.78 15.07 6.05 6.05 Total: -1.00 -31.63 401.78 -7.10 -38.72 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -6.84 Total: 2.44 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -2.40 Total: 0.33 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: 1.67 Total: -52.10 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: -0.55 Total: -11.59 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.63 -7.10 -38.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840154023.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.075 kcal (2) G-P(sol) polarization free energy of solvation -31.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds