Wall clock time and date at job start Wed Apr 1 2020 05:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42910 * 109.47268 * 2 1 4 4 C 1.35862 * 117.00044 * 179.97438 * 3 2 1 5 5 C 1.38827 * 119.94139 * 179.97438 * 4 3 2 6 6 C 1.37915 * 120.06475 * 179.97438 * 5 4 3 7 7 C 1.39337 * 119.93884 * 0.02562 * 6 5 4 8 8 C 1.48436 * 120.06395 * 180.02562 * 7 6 5 9 9 N 1.34062 * 126.67041 * 359.68549 * 8 7 6 10 10 N 1.28985 * 107.26236 * 179.86817 * 9 8 7 11 11 N 1.28733 * 108.94841 * 0.39820 * 10 9 8 12 12 C 1.46499 * 125.34104 * 179.70676 * 11 10 9 13 13 N 1.46504 * 109.47158 * 270.04734 * 12 11 10 14 14 C 1.36946 * 119.99571 * 269.82788 * 13 12 11 15 15 H 1.07998 * 119.99496 * 325.84594 * 14 13 12 16 16 C 1.38810 * 119.99858 * 145.84846 * 14 13 12 17 17 N 1.31626 * 119.99896 * 336.79742 * 16 14 13 18 18 Si 1.86797 * 119.99830 * 156.80032 * 16 14 13 19 19 H 1.48501 * 109.47207 * 89.99872 * 18 16 14 20 20 H 1.48500 * 109.46930 * 209.99927 * 18 16 14 21 21 H 1.48501 * 109.46931 * 329.99649 * 18 16 14 22 22 C 1.46491 * 120.00295 * 89.82737 * 13 12 11 23 23 C 1.53002 * 109.46981 * 90.00226 * 22 13 12 24 24 O 1.42899 * 109.47563 * 64.99830 * 23 22 13 25 25 C 1.42902 * 114.00011 * 180.02562 * 24 23 22 26 26 N 1.28875 * 109.31817 * 359.74701 * 11 10 9 27 27 C 1.39342 * 119.87798 * 0.27330 * 7 6 5 28 28 C 1.37922 * 119.93715 * 359.42468 * 27 7 6 29 29 H 1.08996 * 109.47540 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47443 * 300.00529 * 1 2 3 31 31 H 1.09005 * 109.46923 * 60.00062 * 1 2 3 32 32 H 1.08997 * 109.47443 * 239.99471 * 2 1 3 33 33 H 1.09000 * 109.46830 * 119.99473 * 2 1 3 34 34 H 1.08003 * 119.96591 * 359.97438 * 5 4 3 35 35 H 1.08002 * 120.02804 * 180.02562 * 6 5 4 36 36 H 1.09006 * 109.46856 * 30.04353 * 12 11 10 37 37 H 1.08997 * 109.47266 * 150.04141 * 12 11 10 38 38 H 0.96993 * 119.99496 * 180.02562 * 17 16 14 39 39 H 1.09000 * 109.47120 * 209.99736 * 22 13 12 40 40 H 1.08997 * 109.47249 * 329.99992 * 22 13 12 41 41 H 1.09005 * 109.47072 * 185.00104 * 23 22 13 42 42 H 1.09007 * 109.47126 * 304.99575 * 23 22 13 43 43 H 1.08997 * 109.47141 * 60.00191 * 25 24 23 44 44 H 1.09003 * 109.46508 * 180.02562 * 25 24 23 45 45 H 1.08998 * 109.46715 * 299.99489 * 25 24 23 46 46 H 1.07996 * 120.03368 * 179.70619 * 27 7 6 47 47 H 1.07999 * 119.96984 * 180.27953 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3532 1.5253 0.0005 5 6 3.8826 2.8087 0.0000 6 6 5.2495 2.9924 0.0011 7 6 6.0994 1.8883 0.0022 8 6 7.5710 2.0827 0.0039 9 7 8.2239 3.2536 -0.0013 10 7 9.4861 2.9880 0.0054 11 7 9.6445 1.7105 0.0060 12 6 10.9347 1.0165 0.0067 13 7 11.3657 0.7856 -1.3743 14 6 11.0083 -0.3685 -2.0192 15 1 10.9245 -1.2923 -1.4661 16 6 10.7538 -0.3508 -3.3837 17 7 10.4053 0.7731 -3.9736 18 14 10.9058 -1.9219 -4.3825 19 1 9.5985 -2.6261 -4.3996 20 1 11.3062 -1.5877 -5.7729 21 1 11.9336 -2.8009 -3.7691 22 6 12.1790 1.7891 -2.0654 23 6 13.6616 1.4979 -1.8246 24 8 14.0064 0.2500 -2.4295 25 6 15.3769 -0.1183 -2.2617 26 7 8.4900 1.1377 0.0051 27 6 5.5655 0.6012 -0.0036 28 6 4.1978 0.4234 0.0016 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 3.2233 3.6642 -0.0012 35 1 5.6606 3.9911 0.0011 36 1 11.6759 1.6282 0.5212 37 1 10.8328 0.0605 0.5202 38 1 10.2272 0.7853 -4.9270 39 1 11.9705 1.7521 -3.1347 40 1 11.9364 2.7801 -1.6820 41 1 14.2640 2.2932 -2.2635 42 1 13.8524 1.4470 -0.7526 43 1 15.6028 -0.2028 -1.1987 44 1 15.5580 -1.0762 -2.7493 45 1 16.0152 0.6434 -2.7094 46 1 6.2219 -0.2563 -0.0076 47 1 3.7834 -0.5739 0.0017 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840154023.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:59 Heat of formation + Delta-G solvation = 74.375736 kcal Electronic energy + Delta-G solvation = -30063.666036 eV Core-core repulsion = 25864.504087 eV Total energy + Delta-G solvation = -4199.161950 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 2.71 seconds Orbital eigenvalues (eV) -44.80947 -41.10280 -39.02070 -38.62103 -37.46686 -35.12534 -34.09957 -33.36257 -32.64440 -31.98726 -30.92028 -30.17314 -28.02582 -27.14596 -25.46580 -25.27213 -24.64380 -23.77852 -22.78568 -22.18211 -22.01002 -19.33523 -19.08824 -18.44891 -17.98751 -17.33172 -17.03583 -17.00969 -16.76620 -16.67869 -16.42740 -15.65024 -15.52994 -15.46625 -15.26630 -14.61617 -14.53286 -14.36405 -14.33702 -13.87973 -13.59823 -13.50438 -13.28585 -13.19614 -13.00065 -12.81960 -12.77053 -12.66591 -12.50857 -12.38390 -12.28726 -12.06998 -11.86584 -11.82554 -11.66880 -11.63910 -11.57149 -11.07060 -10.71056 -10.35520 -10.04920 -9.07761 -9.01418 -8.03652 -5.62958 -0.03751 0.34155 0.62657 1.37597 1.45640 1.53265 1.58530 1.63772 2.21630 2.42135 2.83108 3.02376 3.13661 3.21608 3.36127 3.48668 3.82355 3.90503 4.09998 4.11493 4.24746 4.28791 4.32070 4.39377 4.41871 4.48743 4.51559 4.62368 4.63636 4.66833 4.69899 4.76982 4.77525 4.90592 4.91076 4.98584 5.03516 5.07948 5.18463 5.30541 5.34904 5.55049 5.55837 5.58197 5.66706 5.72836 6.20355 6.40593 6.60069 6.88979 7.53107 7.69323 7.98026 8.95503 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014724 B = 0.002559 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.237551 B =10941.043538 C =12244.823269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.040 3.960 3 O -0.323 6.323 4 C 0.140 3.860 5 C -0.153 4.153 6 C -0.047 4.047 7 C -0.061 4.061 8 C 0.177 3.823 9 N -0.318 5.318 10 N -0.094 5.094 11 N -0.117 5.117 12 C 0.325 3.675 13 N -0.540 5.540 14 C -0.261 4.261 15 H 0.072 0.928 16 C -0.012 4.012 17 N -0.908 5.908 18 Si 0.962 3.038 19 H -0.288 1.288 20 H -0.294 1.294 21 H -0.264 1.264 22 C 0.126 3.874 23 C 0.062 3.938 24 O -0.397 6.397 25 C 0.026 3.974 26 N -0.311 5.311 27 C -0.051 4.051 28 C -0.205 4.205 29 H 0.099 0.901 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.157 0.843 35 H 0.141 0.859 36 H 0.128 0.872 37 H 0.115 0.885 38 H 0.253 0.747 39 H 0.075 0.925 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.048 0.952 44 H 0.081 0.919 45 H 0.045 0.955 46 H 0.128 0.872 47 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.639 -1.576 9.137 12.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.034 4.034 3 O -0.237 6.237 4 C 0.093 3.907 5 C -0.171 4.171 6 C -0.067 4.067 7 C -0.065 4.065 8 C -0.102 4.102 9 N -0.189 5.189 10 N -0.087 5.087 11 N -0.041 5.041 12 C 0.121 3.879 13 N -0.256 5.256 14 C -0.392 4.392 15 H 0.090 0.910 16 C -0.212 4.212 17 N -0.550 5.550 18 Si 0.789 3.211 19 H -0.214 1.214 20 H -0.220 1.220 21 H -0.189 1.189 22 C 0.001 3.999 23 C -0.016 4.016 24 O -0.316 6.316 25 C -0.070 4.070 26 N -0.163 5.163 27 C -0.071 4.071 28 C -0.223 4.223 29 H 0.117 0.883 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.175 0.825 35 H 0.159 0.841 36 H 0.145 0.855 37 H 0.133 0.867 38 H 0.062 0.938 39 H 0.093 0.907 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.100 0.900 45 H 0.064 0.936 46 H 0.146 0.854 47 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -8.184 -1.229 8.841 12.110 hybrid contribution 0.219 -0.848 -0.884 1.244 sum -7.965 -2.077 7.958 11.449 Atomic orbital electron populations 1.21800 0.91217 1.04187 1.03311 1.23142 0.97099 0.80694 1.02513 1.86059 1.18095 1.31448 1.88084 1.19197 0.82840 0.94125 0.94502 1.20507 0.94132 0.95891 1.06576 1.21033 0.92182 0.98447 0.95024 1.17423 0.84723 0.95313 1.09021 1.24000 0.96480 0.85558 1.04184 1.75708 0.97467 1.25049 1.20632 1.78522 1.12479 1.00925 1.16762 1.53665 1.08942 1.02733 1.38795 1.23417 0.77222 0.97253 0.90038 1.44925 1.50985 1.18586 1.11139 1.19188 1.42367 0.86383 0.91227 0.91043 1.25763 0.96845 0.99146 0.99439 1.70117 1.45952 1.28360 1.10555 0.85400 0.77810 0.80162 0.77705 1.21444 1.22016 1.18857 1.21276 0.88041 0.89668 1.00880 1.23030 0.96369 0.85573 0.96677 1.88138 1.26905 1.39148 1.77381 1.22830 0.82775 1.00637 1.00801 1.74756 0.92482 1.27925 1.21172 1.21029 0.95363 0.95786 0.94965 1.21321 0.92647 0.99558 1.08801 0.88264 0.91540 0.91869 0.91273 0.90730 0.82518 0.84112 0.85468 0.86734 0.93772 0.90676 0.92733 0.92790 0.92822 0.93371 0.89995 0.93616 0.85405 0.82547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 10.28 71.98 0.74 -0.85 16 2 C 0.04 0.60 5.46 71.98 0.39 0.99 16 3 O -0.32 -7.05 10.13 -92.00 -0.93 -7.98 16 4 C 0.14 3.51 6.69 22.55 0.15 3.66 16 5 C -0.15 -3.91 9.97 22.33 0.22 -3.69 16 6 C -0.05 -1.43 9.70 22.46 0.22 -1.21 16 7 C -0.06 -2.21 5.88 -20.03 -0.12 -2.32 16 8 C 0.18 7.66 7.93 137.37 1.09 8.75 16 9 N -0.32 -14.24 12.23 -52.19 -0.64 -14.88 16 10 N -0.09 -4.23 13.23 37.02 0.49 -3.74 16 11 N -0.12 -5.11 4.23 -196.49 -0.83 -5.94 16 12 C 0.33 12.50 7.12 170.96 1.22 13.71 16 13 N -0.54 -24.51 2.67 -713.75 -1.91 -26.42 16 14 C -0.26 -13.34 8.98 84.03 0.75 -12.59 16 15 H 0.07 3.61 7.93 -2.91 -0.02 3.59 16 16 C -0.01 -0.66 4.94 84.86 0.42 -0.24 16 17 N -0.91 -52.38 11.34 21.65 0.25 -52.13 16 18 Si 0.96 44.36 29.61 68.60 2.03 46.39 16 19 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 20 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 21 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 22 C 0.13 5.54 5.72 86.38 0.49 6.03 16 23 C 0.06 2.17 6.28 71.98 0.45 2.63 16 24 O -0.40 -15.52 10.18 -148.98 -1.52 -17.03 16 25 C 0.03 0.72 11.01 113.37 1.25 1.97 16 26 N -0.31 -14.06 11.85 -52.14 -0.62 -14.67 16 27 C -0.05 -1.63 9.69 22.46 0.22 -1.41 16 28 C -0.20 -5.20 9.02 22.34 0.20 -5.00 16 29 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.07 0.97 7.66 -2.39 -0.02 0.95 16 33 H 0.07 0.95 7.65 -2.39 -0.02 0.94 16 34 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 35 H 0.14 4.18 7.88 -2.91 -0.02 4.15 16 36 H 0.13 3.95 8.07 -2.38 -0.02 3.93 16 37 H 0.11 4.05 8.04 -2.39 -0.02 4.03 16 38 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 39 H 0.08 3.97 5.34 -2.39 -0.01 3.95 16 40 H 0.05 2.31 8.07 -2.39 -0.02 2.29 16 41 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 42 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 43 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 45 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.13 4.21 7.88 -2.91 -0.02 4.19 16 47 H 0.16 3.02 6.28 -2.91 -0.02 3.00 16 Total: -1.00 -70.05 401.78 5.00 -65.05 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: 0.98 Total: 20.93 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: 7.70 Total: 10.43 kcal Atomic # 7 Polarization: -114.52 SS G_CDS: -3.26 Total: -117.78 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -2.45 Total: -25.02 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -70.05 5.00 -65.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840154023.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.425 kcal (2) G-P(sol) polarization free energy of solvation -70.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.71 seconds