Wall clock time and date at job start Wed Apr 1 2020 06:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.40098 * 120.00569 * 2 1 4 4 C 1.34779 * 119.99865 * 64.48854 * 3 2 1 5 5 O 1.21574 * 120.00328 * 179.73007 * 4 3 2 6 6 N 1.34784 * 120.00029 * 359.72551 * 4 3 2 7 7 C 1.39237 * 120.00045 * 175.53071 * 6 4 3 8 8 C 1.39481 * 119.83362 * 215.05935 * 7 6 4 9 9 C 1.36378 * 120.16924 * 179.75932 * 8 7 6 10 10 C 1.40861 * 119.82522 * 0.51387 * 9 8 7 11 11 C 1.41159 * 120.16466 * 179.72254 * 10 9 8 12 12 H 1.08002 * 120.00081 * 214.12785 * 11 10 9 13 13 C 1.39887 * 120.00164 * 34.11525 * 11 10 9 14 14 N 1.30884 * 119.99926 * 5.69616 * 13 11 10 15 15 Si 1.86796 * 120.00348 * 185.69624 * 13 11 10 16 16 H 1.48494 * 109.47083 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47409 * 120.00155 * 15 13 11 18 18 H 1.48503 * 109.47417 * 239.99981 * 15 13 11 19 19 C 1.40873 * 119.67546 * 359.73834 * 10 9 8 20 20 C 1.36373 * 119.82712 * 0.02562 * 19 10 9 21 21 C 1.34787 * 119.99616 * 179.97438 * 2 1 3 22 22 O 1.21584 * 119.99597 * 7.83926 * 21 2 1 23 23 N 1.34771 * 119.99864 * 187.83612 * 21 2 1 24 24 C 1.47080 * 120.88204 * 190.69265 * 23 21 2 25 25 C 1.52778 * 108.76894 * 231.12440 * 24 23 21 26 26 N 1.46901 * 109.42405 * 306.42401 * 25 24 23 27 27 C 1.46908 * 111.26946 * 62.96055 * 26 25 24 28 28 C 1.47088 * 120.88087 * 10.97153 * 23 21 2 29 29 H 1.08999 * 109.47380 * 89.99641 * 1 2 3 30 30 H 1.09003 * 109.47537 * 210.00524 * 1 2 3 31 31 H 1.09003 * 109.47014 * 329.99566 * 1 2 3 32 32 H 0.96994 * 120.00265 * 244.21680 * 3 2 1 33 33 H 0.97003 * 119.99786 * 355.53774 * 6 4 3 34 34 H 1.08001 * 119.91597 * 0.02562 * 8 7 6 35 35 H 1.07997 * 120.08694 * 180.25287 * 9 8 7 36 36 H 0.97001 * 120.00504 * 179.97438 * 14 13 11 37 37 H 1.08000 * 120.08422 * 179.97438 * 19 10 9 38 38 H 1.07999 * 119.91515 * 179.97438 * 20 19 10 39 39 H 1.08994 * 109.62600 * 350.89845 * 24 23 21 40 40 H 1.09007 * 109.62565 * 111.47414 * 24 23 21 41 41 H 1.08998 * 109.56674 * 186.36945 * 25 24 23 42 42 H 1.08996 * 109.36144 * 66.34880 * 25 24 23 43 43 H 1.00892 * 111.00251 * 187.11273 * 26 25 24 44 44 H 1.08993 * 109.49450 * 176.93657 * 27 26 25 45 45 H 1.09002 * 109.50647 * 56.86936 * 27 26 25 46 46 H 1.09002 * 109.63081 * 248.52400 * 28 23 21 47 47 H 1.08998 * 109.62703 * 9.11056 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1656 1.2132 0.0000 4 6 2.0672 2.0482 1.0534 5 8 2.6790 3.0987 1.0557 6 7 1.2905 1.7185 2.1045 7 6 1.2611 2.5352 3.2318 8 6 1.1255 1.9658 4.4978 9 6 1.1009 2.7590 5.6069 10 6 1.2019 4.1573 5.4706 11 6 1.1713 4.9855 6.6134 12 1 0.7114 5.9612 6.5610 13 6 1.7365 4.5422 7.8138 14 7 2.3909 3.4093 7.8499 15 14 1.5572 5.5670 9.3652 16 1 0.7784 6.7941 9.0606 17 1 0.8474 4.7756 10.4021 18 1 2.9027 5.9458 9.8665 19 6 1.3333 4.7254 4.1882 20 6 1.3613 3.9191 3.0888 21 6 2.1388 -1.1673 0.0005 22 8 1.5393 -2.2153 -0.1426 23 7 3.4771 -1.1728 0.1597 24 6 4.2593 -2.3975 -0.0672 25 6 5.1526 -2.6423 1.1478 26 7 5.9484 -1.4378 1.4197 27 6 5.0886 -0.2981 1.7663 28 6 4.1934 0.0443 0.5707 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 2.7245 1.4505 -0.7563 33 1 0.7520 0.9122 2.0755 34 1 1.0441 0.8938 4.6004 35 1 0.9999 2.3164 6.5869 36 1 2.7832 3.1020 8.6822 37 1 1.4109 5.7968 4.0761 38 1 1.4616 4.3531 2.1050 39 1 3.5849 -3.2432 -0.2006 40 1 4.8796 -2.2765 -0.9554 41 1 5.8193 -3.4811 0.9476 42 1 4.5308 -2.8704 2.0134 43 1 6.6295 -1.6103 2.1438 44 1 5.7088 0.5630 2.0148 45 1 4.4673 -0.5583 2.6233 46 1 4.8072 0.4045 -0.2549 47 1 3.4754 0.8120 0.8590 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841019631.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:23:46 Heat of formation + Delta-G solvation = 64.703989 kcal Electronic energy + Delta-G solvation = -31578.656070 eV Core-core repulsion = 27379.074722 eV Total energy + Delta-G solvation = -4199.581348 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -41.47818 -39.79590 -37.98453 -37.64117 -36.30016 -34.64434 -33.85573 -32.93080 -31.72970 -31.16466 -29.66387 -28.91724 -27.85454 -25.74588 -24.92305 -23.79623 -22.32084 -21.68180 -21.04839 -20.65745 -19.83699 -18.47450 -18.24022 -17.34946 -16.89064 -16.54797 -16.12898 -15.78500 -15.41693 -15.22307 -15.13071 -14.89839 -14.56234 -14.42454 -14.25975 -13.96647 -13.76696 -13.22861 -12.84082 -12.76593 -12.60395 -12.43801 -12.20425 -11.85772 -11.68406 -11.48729 -11.43843 -11.36040 -11.20146 -11.06008 -10.85387 -10.74831 -10.40338 -9.78678 -9.64001 -9.56150 -9.34560 -9.15451 -9.02582 -8.72637 -8.46746 -7.63145 -6.97439 -6.71893 -4.38750 1.56897 2.51800 2.66642 2.82828 3.01103 3.02233 3.07127 3.12104 3.32839 3.52911 3.93562 3.98513 4.45672 4.63030 4.77443 4.81885 5.04448 5.09408 5.13440 5.17369 5.19510 5.34182 5.48428 5.52801 5.58524 5.64383 5.72515 5.85721 6.04943 6.10730 6.19934 6.32421 6.58073 6.60529 6.68525 6.70943 6.90297 7.00054 7.07778 7.11671 7.21773 7.46196 7.55538 7.72678 7.85441 7.99685 8.11799 8.21975 8.32645 8.54330 8.66302 8.85564 8.92138 10.22840 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014590 B = 0.002872 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.677616 B = 9746.413853 C =10643.396730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.436 5.436 3 N -0.535 5.535 4 C 0.696 3.304 5 O -0.554 6.554 6 N -0.655 5.655 7 C 0.008 3.992 8 C -0.115 4.115 9 C -0.139 4.139 10 C 0.108 3.892 11 C -0.462 4.462 12 H 0.078 0.922 13 C 0.072 3.928 14 N -0.807 5.807 15 Si 0.912 3.088 16 H -0.261 1.261 17 H -0.274 1.274 18 H -0.275 1.275 19 C -0.206 4.206 20 C -0.080 4.080 21 C 0.720 3.280 22 O -0.577 6.577 23 N -0.620 5.620 24 C 0.132 3.868 25 C 0.042 3.958 26 N -0.689 5.689 27 C 0.044 3.956 28 C 0.064 3.936 29 H 0.066 0.934 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.427 0.573 33 H 0.395 0.605 34 H 0.089 0.911 35 H 0.121 0.879 36 H 0.278 0.722 37 H 0.097 0.903 38 H 0.109 0.891 39 H 0.095 0.905 40 H 0.071 0.929 41 H 0.086 0.914 42 H 0.036 0.964 43 H 0.345 0.655 44 H 0.089 0.911 45 H 0.037 0.963 46 H 0.069 0.931 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.050 -10.170 -12.483 16.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.269 5.269 3 N -0.296 5.296 4 C 0.398 3.602 5 O -0.426 6.426 6 N -0.302 5.302 7 C -0.084 4.084 8 C -0.136 4.136 9 C -0.159 4.159 10 C 0.105 3.895 11 C -0.493 4.493 12 H 0.096 0.904 13 C -0.144 4.144 14 N -0.434 5.434 15 Si 0.737 3.263 16 H -0.185 1.185 17 H -0.199 1.199 18 H -0.200 1.200 19 C -0.226 4.226 20 C -0.100 4.100 21 C 0.422 3.578 22 O -0.451 6.451 23 N -0.357 5.357 24 C 0.008 3.992 25 C -0.088 4.088 26 N -0.321 5.321 27 C -0.087 4.087 28 C -0.060 4.060 29 H 0.084 0.916 30 H 0.112 0.888 31 H 0.097 0.903 32 H 0.273 0.727 33 H 0.230 0.770 34 H 0.107 0.893 35 H 0.139 0.861 36 H 0.089 0.911 37 H 0.115 0.885 38 H 0.127 0.873 39 H 0.113 0.887 40 H 0.090 0.910 41 H 0.105 0.895 42 H 0.054 0.946 43 H 0.163 0.837 44 H 0.107 0.893 45 H 0.055 0.945 46 H 0.087 0.913 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.235 -9.973 -12.899 16.458 hybrid contribution -0.029 -0.182 1.300 1.313 sum 2.206 -10.155 -11.600 15.574 Atomic orbital electron populations 1.21994 0.75394 1.04112 1.03333 1.46474 1.04439 0.95670 1.80312 1.45407 1.50561 1.11827 1.21820 1.16008 0.80826 0.83154 0.80204 1.91054 1.50336 1.22288 1.78935 1.42340 1.44846 1.27654 1.15350 1.17027 1.18255 0.89357 0.83796 1.20219 1.04403 0.97498 0.91453 1.20908 1.04230 0.94002 0.96764 1.17700 0.87525 0.92291 0.91992 1.19553 1.33302 1.02567 0.93829 0.90409 1.25871 0.93153 0.95048 1.00341 1.69796 1.26068 1.19307 1.28229 0.86194 0.78823 0.80520 0.80751 1.18520 1.19901 1.20014 1.20787 1.11061 0.98034 0.92754 1.20395 0.99838 0.91428 0.98357 1.15756 0.81756 0.82424 0.77826 1.90949 1.67375 1.28491 1.58333 1.47249 1.04475 1.12629 1.71336 1.21530 0.93288 0.86882 0.97457 1.22231 0.95984 0.92982 0.97609 1.60351 1.17317 1.05269 1.49154 1.22325 0.95409 0.94399 0.96525 1.23342 0.97080 0.88350 0.97227 0.91577 0.88833 0.90258 0.72661 0.76954 0.89301 0.86088 0.91088 0.88470 0.87308 0.88712 0.91043 0.89542 0.94586 0.83713 0.89306 0.94502 0.91309 0.84826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.91 9.52 59.84 0.57 1.48 16 2 N -0.44 -5.07 3.05 -72.07 -0.22 -5.29 16 3 N -0.53 -6.39 3.40 27.63 0.09 -6.30 16 4 C 0.70 11.05 6.22 -86.91 -0.54 10.50 16 5 O -0.55 -10.73 14.59 5.30 0.08 -10.66 16 6 N -0.65 -10.87 4.81 -14.10 -0.07 -10.94 16 7 C 0.01 0.17 6.31 -83.57 -0.53 -0.36 16 8 C -0.12 -2.52 9.90 -39.79 -0.39 -2.92 16 9 C -0.14 -3.44 8.57 -39.26 -0.34 -3.77 16 10 C 0.11 2.77 5.51 -106.80 -0.59 2.19 16 11 C -0.46 -11.96 9.03 -37.86 -0.34 -12.30 16 12 H 0.08 1.94 7.85 -52.49 -0.41 1.53 16 13 C 0.07 1.77 5.31 -17.34 -0.09 1.67 16 14 N -0.81 -20.54 10.95 55.54 0.61 -19.94 16 15 Si 0.91 18.49 29.56 -169.99 -5.03 13.47 16 16 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 17 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 18 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 19 C -0.21 -4.99 9.74 -39.26 -0.38 -5.37 16 20 C -0.08 -1.81 8.61 -39.79 -0.34 -2.15 16 21 C 0.72 9.59 8.19 -86.91 -0.71 8.88 16 22 O -0.58 -9.00 15.50 5.29 0.08 -8.92 16 23 N -0.62 -7.49 3.02 -178.47 -0.54 -8.02 16 24 C 0.13 1.37 6.59 -3.84 -0.03 1.35 16 25 C 0.04 0.40 6.68 -3.94 -0.03 0.38 16 26 N -0.69 -7.07 6.82 -113.77 -0.78 -7.85 16 27 C 0.04 0.53 6.70 -3.70 -0.02 0.51 16 28 C 0.06 0.77 5.37 -3.60 -0.02 0.75 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.09 0.89 7.54 -51.93 -0.39 0.50 16 31 H 0.08 0.75 6.59 -51.93 -0.34 0.41 16 32 H 0.43 4.44 8.28 -182.60 -1.51 2.92 16 33 H 0.40 5.71 6.12 -40.82 -0.25 5.46 16 34 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 35 H 0.12 3.10 6.45 -52.49 -0.34 2.76 16 36 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 37 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 38 H 0.11 2.40 6.22 -52.49 -0.33 2.08 16 39 H 0.09 1.02 7.05 -51.93 -0.37 0.66 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.34 3.04 8.90 -39.30 -0.35 2.69 16 44 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.14 1.81 2.47 -144.76 -0.36 1.45 16 LS Contribution 374.13 15.07 5.64 5.64 Total: -1.00 -30.09 374.13 -11.50 -41.59 By element: Atomic # 1 Polarization: 23.97 SS G_CDS: -7.59 Total: 16.39 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: -3.78 Total: 0.83 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: -0.90 Total: -58.33 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: 0.16 Total: -19.57 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.47 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.09 -11.50 -41.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841019631.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.293 kcal (2) G-P(sol) polarization free energy of solvation -30.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds