Wall clock time and date at job start Wed Apr 1 2020 06:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.40098 * 120.00569 * 2 1 4 4 C 1.34779 * 119.99865 * 64.48854 * 3 2 1 5 5 O 1.21574 * 120.00328 * 179.73007 * 4 3 2 6 6 N 1.34784 * 120.00029 * 359.72551 * 4 3 2 7 7 C 1.39237 * 120.00045 * 175.53071 * 6 4 3 8 8 C 1.39481 * 119.83362 * 215.05935 * 7 6 4 9 9 C 1.36378 * 120.16924 * 179.75932 * 8 7 6 10 10 C 1.40861 * 119.82522 * 0.51387 * 9 8 7 11 11 C 1.41159 * 120.16466 * 179.72254 * 10 9 8 12 12 H 1.08002 * 120.00081 * 214.12785 * 11 10 9 13 13 C 1.39887 * 120.00164 * 34.11525 * 11 10 9 14 14 N 1.30884 * 119.99926 * 5.69616 * 13 11 10 15 15 Si 1.86796 * 120.00348 * 185.69624 * 13 11 10 16 16 H 1.48494 * 109.47083 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47409 * 120.00155 * 15 13 11 18 18 H 1.48503 * 109.47417 * 239.99981 * 15 13 11 19 19 C 1.40873 * 119.67546 * 359.73834 * 10 9 8 20 20 C 1.36373 * 119.82712 * 0.02562 * 19 10 9 21 21 C 1.34787 * 119.99616 * 179.97438 * 2 1 3 22 22 O 1.21584 * 119.99597 * 7.83926 * 21 2 1 23 23 N 1.34771 * 119.99864 * 187.83612 * 21 2 1 24 24 C 1.47080 * 120.88204 * 190.69265 * 23 21 2 25 25 C 1.52778 * 108.76894 * 231.12440 * 24 23 21 26 26 N 1.46901 * 109.42405 * 306.42401 * 25 24 23 27 27 C 1.46908 * 111.26946 * 62.96055 * 26 25 24 28 28 C 1.47088 * 120.88087 * 10.97153 * 23 21 2 29 29 H 1.08999 * 109.47380 * 89.99641 * 1 2 3 30 30 H 1.09003 * 109.47537 * 210.00524 * 1 2 3 31 31 H 1.09003 * 109.47014 * 329.99566 * 1 2 3 32 32 H 0.96994 * 120.00265 * 244.21680 * 3 2 1 33 33 H 0.97003 * 119.99786 * 355.53774 * 6 4 3 34 34 H 1.08001 * 119.91597 * 0.02562 * 8 7 6 35 35 H 1.07997 * 120.08694 * 180.25287 * 9 8 7 36 36 H 0.97001 * 120.00504 * 179.97438 * 14 13 11 37 37 H 1.08000 * 120.08422 * 179.97438 * 19 10 9 38 38 H 1.07999 * 119.91515 * 179.97438 * 20 19 10 39 39 H 1.08994 * 109.62600 * 350.89845 * 24 23 21 40 40 H 1.09007 * 109.62565 * 111.47414 * 24 23 21 41 41 H 1.08998 * 109.56674 * 186.36945 * 25 24 23 42 42 H 1.08996 * 109.36144 * 66.34880 * 25 24 23 43 43 H 1.00892 * 111.00251 * 187.11273 * 26 25 24 44 44 H 1.08993 * 109.49450 * 176.93657 * 27 26 25 45 45 H 1.09002 * 109.50647 * 56.86936 * 27 26 25 46 46 H 1.09002 * 109.63081 * 248.52400 * 28 23 21 47 47 H 1.08998 * 109.62703 * 9.11056 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1656 1.2132 0.0000 4 6 2.0672 2.0482 1.0534 5 8 2.6790 3.0987 1.0557 6 7 1.2905 1.7185 2.1045 7 6 1.2611 2.5352 3.2318 8 6 1.1255 1.9658 4.4978 9 6 1.1009 2.7590 5.6069 10 6 1.2019 4.1573 5.4706 11 6 1.1713 4.9855 6.6134 12 1 0.7114 5.9612 6.5610 13 6 1.7365 4.5422 7.8138 14 7 2.3909 3.4093 7.8499 15 14 1.5572 5.5670 9.3652 16 1 0.7784 6.7941 9.0606 17 1 0.8474 4.7756 10.4021 18 1 2.9027 5.9458 9.8665 19 6 1.3333 4.7254 4.1882 20 6 1.3613 3.9191 3.0888 21 6 2.1388 -1.1673 0.0005 22 8 1.5393 -2.2153 -0.1426 23 7 3.4771 -1.1728 0.1597 24 6 4.2593 -2.3975 -0.0672 25 6 5.1526 -2.6423 1.1478 26 7 5.9484 -1.4378 1.4197 27 6 5.0886 -0.2981 1.7663 28 6 4.1934 0.0443 0.5707 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 2.7245 1.4505 -0.7563 33 1 0.7520 0.9122 2.0755 34 1 1.0441 0.8938 4.6004 35 1 0.9999 2.3164 6.5869 36 1 2.7832 3.1020 8.6822 37 1 1.4109 5.7968 4.0761 38 1 1.4616 4.3531 2.1050 39 1 3.5849 -3.2432 -0.2006 40 1 4.8796 -2.2765 -0.9554 41 1 5.8193 -3.4811 0.9476 42 1 4.5308 -2.8704 2.0134 43 1 6.6295 -1.6103 2.1438 44 1 5.7088 0.5630 2.0148 45 1 4.4673 -0.5583 2.6233 46 1 4.8072 0.4045 -0.2549 47 1 3.4754 0.8120 0.8590 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841019631.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:23:42 Heat of formation + Delta-G solvation = 44.499614 kcal Electronic energy + Delta-G solvation = -31579.532198 eV Core-core repulsion = 27379.074722 eV Total energy + Delta-G solvation = -4200.457475 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.62942 -41.06278 -39.33800 -38.90900 -37.51836 -36.27917 -34.85952 -34.58769 -32.80070 -32.10986 -31.49110 -30.66207 -28.80055 -27.00698 -26.34725 -24.70143 -23.80172 -23.07764 -22.60652 -21.79721 -21.14298 -19.68556 -19.40323 -19.19672 -17.91548 -17.80932 -17.31850 -17.01710 -16.88503 -16.50215 -16.40129 -15.78419 -15.71598 -15.68472 -15.36348 -15.34671 -14.92992 -14.59073 -14.51898 -14.01506 -13.76381 -13.66031 -13.49208 -13.41072 -13.21633 -12.91412 -12.81356 -12.56777 -12.51246 -12.32534 -12.27172 -11.95207 -11.84566 -11.43141 -11.36582 -11.17113 -10.83123 -10.61470 -10.11925 -9.72304 -9.47715 -9.39254 -8.76546 -8.53990 -6.30889 0.52885 0.81461 1.14237 1.41167 1.45231 1.55279 1.62073 1.76435 1.89979 2.24233 2.28215 2.79875 3.14178 3.42005 3.69406 3.85363 3.94694 4.15639 4.20308 4.25292 4.28696 4.36420 4.41729 4.45765 4.53488 4.68325 4.74453 4.76411 4.79948 4.88714 4.95913 5.01351 5.11951 5.15743 5.24719 5.32532 5.39135 5.53250 5.67553 5.70930 5.82558 5.92891 6.01515 6.11653 6.29156 6.38226 6.42324 6.67112 6.88902 6.96833 6.99469 7.18780 7.37449 8.42150 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014590 B = 0.002872 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.677616 B = 9746.413853 C =10643.396730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.432 5.432 3 N -0.513 5.513 4 C 0.706 3.294 5 O -0.586 6.586 6 N -0.651 5.651 7 C 0.032 3.968 8 C -0.115 4.115 9 C -0.155 4.155 10 C 0.077 3.923 11 C -0.498 4.498 12 H 0.074 0.926 13 C 0.031 3.969 14 N -0.840 5.840 15 Si 0.984 3.016 16 H -0.259 1.259 17 H -0.265 1.265 18 H -0.270 1.270 19 C -0.218 4.218 20 C -0.086 4.086 21 C 0.716 3.284 22 O -0.599 6.599 23 N -0.620 5.620 24 C 0.128 3.872 25 C 0.045 3.955 26 N -0.685 5.685 27 C 0.045 3.955 28 C 0.068 3.932 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.440 0.560 33 H 0.408 0.592 34 H 0.114 0.886 35 H 0.106 0.894 36 H 0.285 0.715 37 H 0.099 0.901 38 H 0.115 0.885 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.114 0.886 42 H 0.021 0.979 43 H 0.354 0.646 44 H 0.087 0.913 45 H 0.014 0.986 46 H 0.082 0.918 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.436 -11.177 -13.608 17.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.265 5.265 3 N -0.274 5.274 4 C 0.408 3.592 5 O -0.461 6.461 6 N -0.300 5.300 7 C -0.062 4.062 8 C -0.135 4.135 9 C -0.175 4.175 10 C 0.074 3.926 11 C -0.529 4.529 12 H 0.092 0.908 13 C -0.181 4.181 14 N -0.467 5.467 15 Si 0.805 3.195 16 H -0.183 1.183 17 H -0.190 1.190 18 H -0.195 1.195 19 C -0.238 4.238 20 C -0.107 4.107 21 C 0.418 3.582 22 O -0.476 6.476 23 N -0.356 5.356 24 C 0.006 3.994 25 C -0.085 4.085 26 N -0.317 5.317 27 C -0.085 4.085 28 C -0.056 4.056 29 H 0.103 0.897 30 H 0.114 0.886 31 H 0.101 0.899 32 H 0.288 0.712 33 H 0.246 0.754 34 H 0.132 0.868 35 H 0.124 0.876 36 H 0.095 0.905 37 H 0.117 0.883 38 H 0.133 0.867 39 H 0.109 0.891 40 H 0.104 0.896 41 H 0.132 0.868 42 H 0.039 0.961 43 H 0.173 0.827 44 H 0.105 0.895 45 H 0.032 0.968 46 H 0.100 0.900 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.626 -11.020 -14.082 18.073 hybrid contribution -0.119 -0.006 1.451 1.456 sum 2.508 -11.026 -12.630 16.953 Atomic orbital electron populations 1.22174 0.73933 1.04340 1.04708 1.46579 1.05074 0.94878 1.79976 1.44995 1.50237 1.11253 1.20884 1.15913 0.80060 0.82937 0.80325 1.91043 1.51371 1.23971 1.79684 1.42132 1.45664 1.27649 1.14519 1.16991 1.15088 0.89280 0.84832 1.20393 1.03536 0.98554 0.91048 1.20853 1.05533 0.94035 0.97048 1.17982 0.88821 0.93059 0.92702 1.19767 1.35060 1.02916 0.95140 0.90764 1.26672 0.92256 0.96150 1.03027 1.69855 1.26827 1.20741 1.29321 0.85124 0.78872 0.78844 0.76641 1.18298 1.18967 1.19472 1.20925 1.11441 0.98516 0.92956 1.20509 0.99925 0.92146 0.98079 1.15877 0.82065 0.82409 0.77816 1.90938 1.67910 1.29271 1.59507 1.47355 1.04265 1.13185 1.70806 1.21676 0.93291 0.86073 0.98383 1.22274 0.96138 0.93442 0.96624 1.60359 1.17012 1.05025 1.49316 1.22241 0.95367 0.95192 0.95734 1.23244 0.96798 0.87976 0.97590 0.89726 0.88593 0.89934 0.71154 0.75385 0.86828 0.87622 0.90490 0.88304 0.86680 0.89099 0.89624 0.86794 0.96095 0.82670 0.89501 0.96791 0.89991 0.86296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.52 9.52 127.77 1.22 2.74 16 2 N -0.43 -9.10 3.05 -500.19 -1.53 -10.63 16 3 N -0.51 -11.17 3.40 -184.75 -0.63 -11.80 16 4 C 0.71 21.22 6.22 179.05 1.11 22.34 16 5 O -0.59 -22.02 14.59 -3.95 -0.06 -22.08 16 6 N -0.65 -20.55 4.81 -316.78 -1.52 -22.08 16 7 C 0.03 1.30 6.31 38.56 0.24 1.55 16 8 C -0.11 -4.99 9.90 22.14 0.22 -4.77 16 9 C -0.15 -7.82 8.57 22.48 0.19 -7.63 16 10 C 0.08 4.09 5.51 -21.28 -0.12 3.97 16 11 C -0.50 -26.66 9.03 23.39 0.21 -26.45 16 12 H 0.07 3.85 7.85 -2.91 -0.02 3.83 16 13 C 0.03 1.58 5.31 85.23 0.45 2.03 16 14 N -0.84 -43.72 10.95 21.82 0.24 -43.48 16 15 Si 0.98 38.34 29.56 68.60 2.03 40.37 16 16 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 17 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 18 H -0.27 -10.20 7.11 99.48 0.71 -9.50 16 19 C -0.22 -10.81 9.74 22.48 0.22 -10.59 16 20 C -0.09 -3.89 8.61 22.13 0.19 -3.70 16 21 C 0.72 17.71 8.19 179.05 1.47 19.17 16 22 O -0.60 -17.72 15.50 -3.98 -0.06 -17.79 16 23 N -0.62 -13.78 3.02 -836.81 -2.52 -16.30 16 24 C 0.13 2.40 6.59 86.19 0.57 2.97 16 25 C 0.05 0.77 6.68 86.23 0.58 1.35 16 26 N -0.68 -12.74 6.82 -513.85 -3.50 -16.24 16 27 C 0.05 1.05 6.70 86.38 0.58 1.63 16 28 C 0.07 1.51 5.37 86.35 0.46 1.97 16 29 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.10 1.63 7.54 -2.39 -0.02 1.61 16 31 H 0.08 1.36 6.59 -2.39 -0.02 1.34 16 32 H 0.44 8.07 8.28 -213.33 -1.77 6.30 16 33 H 0.41 10.92 6.12 -92.71 -0.57 10.35 16 34 H 0.11 4.30 8.06 -2.91 -0.02 4.28 16 35 H 0.11 5.61 6.45 -2.91 -0.02 5.59 16 36 H 0.28 13.46 8.30 -92.71 -0.77 12.69 16 37 H 0.10 4.70 8.06 -2.91 -0.02 4.68 16 38 H 0.12 5.03 6.22 -2.91 -0.02 5.01 16 39 H 0.09 1.80 7.05 -2.39 -0.02 1.79 16 40 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 41 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.02 0.43 8.14 -2.39 -0.02 0.41 16 43 H 0.35 5.59 8.90 -89.70 -0.80 4.79 16 44 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 46 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.12 3.01 2.47 -123.82 -0.31 2.71 16 Total: -1.00 -65.71 374.13 -2.35 -68.06 By element: Atomic # 1 Polarization: 47.77 SS G_CDS: -2.38 Total: 45.39 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: 7.59 Total: 6.57 kcal Atomic # 7 Polarization: -111.06 SS G_CDS: -9.47 Total: -120.53 kcal Atomic # 8 Polarization: -39.74 SS G_CDS: -0.12 Total: -39.86 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 2.03 Total: 40.37 kcal Total: -65.71 -2.35 -68.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841019631.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.557 kcal (2) G-P(sol) polarization free energy of solvation -65.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds