Wall clock time and date at job start Wed Apr 1 2020 06:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40095 * 120.00381 * 2 1 4 4 C 1.34781 * 120.00113 * 292.38853 * 3 2 1 5 5 O 1.21579 * 120.00101 * 179.97438 * 4 3 2 6 6 N 1.34784 * 119.99821 * 359.97438 * 4 3 2 7 7 C 1.39952 * 119.99994 * 175.09059 * 6 4 3 8 8 C 1.39282 * 119.94720 * 151.42236 * 7 6 4 9 9 C 1.38487 * 120.42818 * 180.02562 * 8 7 6 10 10 C 1.37676 * 120.32448 * 359.95809 * 9 8 7 11 11 C 1.40740 * 119.88283 * 0.02562 * 10 9 8 12 12 C 1.41410 * 120.21536 * 179.97438 * 11 10 9 13 13 H 1.07995 * 120.00445 * 213.46167 * 12 11 10 14 14 C 1.39935 * 119.99682 * 33.45195 * 12 11 10 15 15 N 1.30831 * 120.00313 * 6.17127 * 14 12 11 16 16 Si 1.86800 * 119.99787 * 186.16563 * 14 12 11 17 17 H 1.48500 * 109.47099 * 90.00658 * 16 14 12 18 18 H 1.48498 * 109.47045 * 210.00315 * 16 14 12 19 19 H 1.48494 * 109.47434 * 330.00579 * 16 14 12 20 20 C 1.38233 * 119.94461 * 331.15294 * 7 6 4 21 21 C 1.34780 * 119.99631 * 180.02562 * 2 1 3 22 22 O 1.21587 * 119.99956 * 359.93948 * 21 2 1 23 23 N 1.34781 * 119.99786 * 179.97438 * 21 2 1 24 24 C 1.47076 * 120.87986 * 345.42154 * 23 21 2 25 25 C 1.53240 * 108.51822 * 231.45526 * 24 23 21 26 26 N 1.46901 * 109.34045 * 306.17096 * 25 24 23 27 27 C 1.46892 * 111.26877 * 63.10266 * 26 25 24 28 28 C 1.47080 * 120.87844 * 165.69715 * 23 21 2 29 29 H 1.09000 * 109.47157 * 270.00086 * 1 2 3 30 30 H 1.08999 * 109.46731 * 30.00309 * 1 2 3 31 31 H 1.08997 * 109.47190 * 149.99691 * 1 2 3 32 32 H 0.96997 * 119.99945 * 112.37986 * 3 2 1 33 33 H 0.97003 * 119.99872 * 355.08403 * 6 4 3 34 34 H 1.08000 * 119.78518 * 0.02562 * 8 7 6 35 35 H 1.08001 * 119.83984 * 179.97438 * 9 8 7 36 36 H 1.08002 * 120.06356 * 180.02562 * 10 9 8 37 37 H 0.96996 * 120.00342 * 179.97438 * 15 14 12 38 38 H 1.08003 * 120.16124 * 359.97438 * 20 7 6 39 39 H 1.09001 * 109.63294 * 351.15847 * 24 23 21 40 40 H 1.08993 * 109.63213 * 111.74434 * 24 23 21 41 41 H 1.08999 * 109.49555 * 186.20649 * 25 24 23 42 42 H 1.08997 * 109.51716 * 66.14050 * 25 24 23 43 43 H 1.00900 * 110.99979 * 187.25461 * 26 25 24 44 44 H 1.09007 * 109.49500 * 176.93482 * 27 26 25 45 45 H 1.09003 * 109.51938 * 56.86962 * 27 26 25 46 46 H 1.09002 * 109.62449 * 248.25577 * 28 23 21 47 47 H 1.08997 * 109.63049 * 8.82948 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1656 1.2132 0.0000 4 6 2.1176 2.0191 -1.0792 5 8 2.7252 3.0722 -1.0791 6 7 1.3960 1.6576 -2.1587 7 6 1.2618 2.5386 -3.2378 8 6 1.0726 2.0388 -4.5241 9 6 0.9392 2.9015 -5.5992 10 6 0.9914 4.2639 -5.4078 11 6 1.1818 4.7835 -4.1137 12 6 1.2370 6.1816 -3.9092 13 1 1.8731 6.5898 -3.1378 14 6 0.4676 7.0362 -4.7065 15 7 -0.3922 6.5389 -5.5581 16 14 0.6679 8.8873 -4.5549 17 1 1.7138 9.3511 -5.5016 18 1 -0.6203 9.5525 -4.8758 19 1 1.0696 9.2297 -3.1669 20 6 1.3118 3.9035 -3.0246 21 6 2.1388 -1.1673 -0.0005 22 8 1.5308 -2.2202 0.0001 23 7 3.4867 -1.1673 -0.0010 24 6 4.2414 0.0544 -0.3188 25 6 5.2679 -0.2770 -1.4073 26 7 6.0859 -1.4174 -0.9736 27 6 5.2680 -2.6256 -0.8030 28 6 4.2416 -2.3906 0.3102 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8899 -0.5139 32 1 2.6851 1.4733 0.7768 33 1 0.9697 0.7867 -2.1877 34 1 1.0296 0.9716 -4.6840 35 1 0.7933 2.5037 -6.5925 36 1 0.8865 4.9329 -6.2492 37 1 -0.9258 7.1313 -6.1105 38 1 1.4537 4.2920 -2.0270 39 1 3.5586 0.8228 -0.6812 40 1 4.7561 0.4094 0.5739 41 1 5.9098 0.5874 -1.5772 42 1 4.7492 -0.5320 -2.3314 43 1 6.8456 -1.5828 -1.6168 44 1 5.9101 -3.4646 -0.5346 45 1 4.7489 -2.8486 -1.7352 46 1 4.7563 -2.2705 1.2636 47 1 3.5589 -3.2386 0.3639 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841256990.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:23:54 Heat of formation + Delta-G solvation = 64.647416 kcal Electronic energy + Delta-G solvation = -31551.733802 eV Core-core repulsion = 27352.150001 eV Total energy + Delta-G solvation = -4199.583801 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.51361 -39.83894 -38.02270 -37.56750 -36.31600 -34.61148 -33.90665 -33.00628 -31.79246 -31.19015 -29.84142 -28.28679 -27.72560 -25.62106 -25.31774 -23.86784 -22.56940 -21.66460 -20.99935 -20.71385 -19.82882 -18.48282 -18.36776 -17.23661 -16.92366 -16.54710 -15.90848 -15.60503 -15.52842 -15.25870 -14.96659 -14.80354 -14.63549 -14.47831 -14.42496 -14.24725 -13.78578 -13.18082 -12.93347 -12.87366 -12.64047 -12.49821 -12.23509 -11.86107 -11.65303 -11.54845 -11.43224 -11.21538 -11.17339 -11.08229 -10.79201 -10.55858 -10.46264 -9.86992 -9.62058 -9.61323 -9.27425 -9.18869 -9.06638 -8.79051 -8.52457 -7.43161 -6.95268 -6.64913 -4.38511 1.53775 2.53832 2.67609 2.74995 2.82932 3.10429 3.13754 3.18141 3.36720 3.45181 3.91411 3.98628 4.42427 4.68233 4.72020 4.76031 4.97422 5.05766 5.09255 5.14699 5.21672 5.27607 5.44609 5.55303 5.58588 5.62859 5.63957 5.78461 6.05180 6.11643 6.19732 6.30403 6.48768 6.57313 6.62909 6.65671 6.94774 6.97788 7.03996 7.06925 7.24877 7.40422 7.63857 7.72699 7.89182 8.06781 8.08560 8.17641 8.31915 8.58769 8.66534 8.92654 8.95127 10.29010 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017211 B = 0.002726 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.460416 B =10270.200073 C =10517.326552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.435 5.435 3 N -0.532 5.532 4 C 0.701 3.299 5 O -0.540 6.540 6 N -0.668 5.668 7 C 0.157 3.843 8 C -0.253 4.253 9 C -0.094 4.094 10 C -0.159 4.159 11 C 0.122 3.878 12 C -0.462 4.462 13 H 0.078 0.922 14 C 0.073 3.927 15 N -0.809 5.809 16 Si 0.912 3.088 17 H -0.269 1.269 18 H -0.279 1.279 19 H -0.263 1.263 20 C -0.207 4.207 21 C 0.720 3.280 22 O -0.575 6.575 23 N -0.623 5.623 24 C 0.060 3.940 25 C 0.044 3.956 26 N -0.689 5.689 27 C 0.042 3.958 28 C 0.132 3.868 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.429 0.571 33 H 0.398 0.602 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.119 0.881 37 H 0.278 0.722 38 H 0.116 0.884 39 H 0.136 0.864 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.035 0.965 43 H 0.344 0.656 44 H 0.086 0.914 45 H 0.036 0.964 46 H 0.072 0.928 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.260 -14.215 9.354 18.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.268 5.268 3 N -0.294 5.294 4 C 0.402 3.598 5 O -0.411 6.411 6 N -0.315 5.315 7 C 0.065 3.935 8 C -0.275 4.275 9 C -0.113 4.113 10 C -0.179 4.179 11 C 0.119 3.881 12 C -0.493 4.493 13 H 0.096 0.904 14 C -0.143 4.143 15 N -0.436 5.436 16 Si 0.737 3.263 17 H -0.194 1.194 18 H -0.204 1.204 19 H -0.187 1.187 20 C -0.228 4.228 21 C 0.422 3.578 22 O -0.450 6.450 23 N -0.360 5.360 24 C -0.064 4.064 25 C -0.086 4.086 26 N -0.321 5.321 27 C -0.088 4.088 28 C 0.009 3.991 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.113 0.887 32 H 0.275 0.725 33 H 0.233 0.767 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.137 0.863 37 H 0.089 0.911 38 H 0.133 0.867 39 H 0.153 0.847 40 H 0.088 0.912 41 H 0.107 0.893 42 H 0.053 0.947 43 H 0.162 0.838 44 H 0.104 0.896 45 H 0.054 0.946 46 H 0.090 0.910 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.042 -13.789 9.726 17.923 hybrid contribution -0.120 0.228 -0.541 0.599 sum 5.921 -13.562 9.185 17.417 Atomic orbital electron populations 1.22015 0.75185 1.04407 1.03303 1.46551 1.04564 0.95600 1.80059 1.45478 1.52414 1.12973 1.18562 1.15970 0.80684 0.82956 0.80159 1.91114 1.48184 1.21589 1.80175 1.42733 1.52521 1.19737 1.16520 1.17302 1.02691 0.88931 0.84587 1.20007 1.18981 0.97236 0.91259 1.20473 1.00701 0.94026 0.96109 1.21400 1.05444 0.93153 0.97912 1.17509 0.87375 0.93045 0.90155 1.19543 1.22998 0.90941 1.15817 0.90418 1.25853 0.93621 1.01292 0.93506 1.69773 1.17759 1.37334 1.18700 0.86249 0.78324 0.81957 0.79779 1.19436 1.20396 1.18688 1.21228 1.12073 0.90212 0.99304 1.15777 0.81841 0.82517 0.77631 1.90954 1.67450 1.28057 1.58506 1.47212 1.03270 1.12454 1.73027 1.23417 0.95588 0.88436 0.98970 1.22329 0.95550 0.94408 0.96348 1.60339 1.12585 1.05129 1.54013 1.22314 0.95437 0.92880 0.98163 1.21624 0.93021 0.86880 0.97560 0.91629 0.90103 0.88722 0.72471 0.76666 0.89355 0.88888 0.86288 0.91100 0.86654 0.84720 0.91202 0.89315 0.94656 0.83765 0.89575 0.94571 0.90962 0.88724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.94 9.68 59.85 0.58 1.52 16 2 N -0.43 -5.04 2.90 -72.07 -0.21 -5.25 16 3 N -0.53 -6.41 3.36 27.64 0.09 -6.32 16 4 C 0.70 11.38 6.34 -86.91 -0.55 10.83 16 5 O -0.54 -10.83 14.55 5.30 0.08 -10.75 16 6 N -0.67 -11.36 4.76 -14.27 -0.07 -11.43 16 7 C 0.16 3.37 6.36 -83.76 -0.53 2.84 16 8 C -0.25 -5.36 9.95 -39.10 -0.39 -5.75 16 9 C -0.09 -2.12 10.01 -39.70 -0.40 -2.52 16 10 C -0.16 -4.05 8.63 -38.84 -0.34 -4.39 16 11 C 0.12 3.24 5.51 -106.85 -0.59 2.66 16 12 C -0.46 -12.40 9.05 -37.74 -0.34 -12.74 16 13 H 0.08 2.05 7.85 -52.49 -0.41 1.64 16 14 C 0.07 1.84 5.31 -17.34 -0.09 1.75 16 15 N -0.81 -20.90 10.93 55.55 0.61 -20.29 16 16 Si 0.91 19.00 29.56 -169.99 -5.03 13.97 16 17 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 18 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 19 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 20 C -0.21 -5.10 8.42 -38.69 -0.33 -5.43 16 21 C 0.72 9.34 8.20 -86.91 -0.71 8.63 16 22 O -0.57 -8.80 15.44 5.29 0.08 -8.72 16 23 N -0.62 -7.14 3.01 -178.20 -0.54 -7.67 16 24 C 0.06 0.67 5.29 -3.60 -0.02 0.65 16 25 C 0.04 0.48 6.70 -3.70 -0.02 0.45 16 26 N -0.69 -6.34 6.82 -113.51 -0.77 -7.12 16 27 C 0.04 0.37 6.69 -3.71 -0.02 0.34 16 28 C 0.13 1.29 6.62 -3.60 -0.02 1.27 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.84 7.07 -51.93 -0.37 0.47 16 31 H 0.09 0.94 7.42 -51.93 -0.39 0.55 16 32 H 0.43 4.44 8.08 -182.60 -1.48 2.97 16 33 H 0.40 5.90 6.75 -40.82 -0.28 5.63 16 34 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 35 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 36 H 0.12 3.14 6.42 -52.49 -0.34 2.80 16 37 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 38 H 0.12 2.93 6.05 -52.48 -0.32 2.61 16 39 H 0.14 1.72 2.54 -153.65 -0.39 1.33 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.34 2.63 8.90 -39.29 -0.35 2.28 16 44 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.09 0.97 7.07 -51.93 -0.37 0.60 16 LS Contribution 374.96 15.07 5.65 5.65 Total: -1.00 -30.71 374.96 -11.50 -42.21 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: -7.62 Total: 15.61 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -3.78 Total: 0.11 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: -0.89 Total: -58.07 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: 0.16 Total: -19.47 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.03 Total: 13.97 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.71 -11.50 -42.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841256990.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.854 kcal (2) G-P(sol) polarization free energy of solvation -30.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds