Wall clock time and date at job start Wed Apr 1 2020 05:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47062 * 2 1 4 4 C 1.42896 * 113.99833 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47080 * 180.02562 * 4 3 2 6 6 N 1.40079 * 126.03861 * 90.02387 * 5 4 3 7 7 C 1.30844 * 108.20504 * 180.02562 * 6 5 4 8 8 C 1.50704 * 125.89818 * 180.02562 * 7 6 5 9 9 C 1.39867 * 108.20167 * 359.97438 * 7 6 5 10 10 C 1.50701 * 126.03961 * 179.97438 * 9 7 6 11 11 C 1.50702 * 109.47164 * 90.02377 * 10 9 7 12 12 O 1.21306 * 119.99631 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00322 * 179.97438 * 11 10 9 14 14 C 1.40588 * 120.00370 * 180.02562 * 13 11 10 15 15 C 1.40653 * 126.08096 * 359.96211 * 14 13 11 16 16 N 1.30910 * 108.38789 * 180.02562 * 15 14 13 17 17 N 1.40066 * 108.40730 * 359.97438 * 16 15 14 18 18 C 1.37323 * 126.07136 * 179.97438 * 17 16 15 19 19 H 1.08003 * 120.00218 * 180.02562 * 18 17 16 20 20 C 1.38984 * 119.99725 * 0.02562 * 18 17 16 21 21 N 1.31291 * 120.00266 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00017 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47255 * 90.00049 * 22 20 18 24 24 H 1.48497 * 109.47089 * 210.00594 * 22 20 18 25 25 H 1.48510 * 109.46865 * 330.00235 * 22 20 18 26 26 C 1.35678 * 126.08563 * 180.02562 * 14 13 11 27 27 C 1.34953 * 126.03535 * 270.31038 * 5 4 3 28 28 C 1.50703 * 126.12820 * 359.97438 * 27 5 4 29 29 H 1.09001 * 109.47489 * 59.99568 * 1 2 3 30 30 H 1.09000 * 109.47083 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46719 * 299.99569 * 1 2 3 32 32 H 1.09005 * 109.47176 * 240.00322 * 2 1 3 33 33 H 1.08998 * 109.47737 * 119.99711 * 2 1 3 34 34 H 1.09004 * 109.47497 * 60.00596 * 4 3 2 35 35 H 1.08998 * 109.47467 * 299.99996 * 4 3 2 36 36 H 1.08994 * 109.47440 * 269.97243 * 8 7 6 37 37 H 1.09004 * 109.46567 * 29.97704 * 8 7 6 38 38 H 1.09002 * 109.46614 * 149.96891 * 8 7 6 39 39 H 1.09000 * 109.47068 * 330.02774 * 10 9 7 40 40 H 1.09003 * 109.47414 * 210.02464 * 10 9 7 41 41 H 0.97001 * 119.99837 * 0.02562 * 13 11 10 42 42 H 1.07996 * 125.80538 * 0.07141 * 15 14 13 43 43 H 0.97003 * 119.99973 * 180.02562 * 21 20 18 44 44 H 1.07999 * 126.24592 * 0.22531 * 26 14 13 45 45 H 1.08996 * 109.46758 * 270.17519 * 28 27 5 46 46 H 1.09003 * 109.47077 * 30.17613 * 28 27 5 47 47 H 1.08993 * 109.47216 * 150.17547 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 7 3.8086 2.8756 0.0001 6 7 4.0221 3.6711 1.1332 7 6 4.3424 4.8750 0.7330 8 6 4.6568 6.0482 1.6251 9 6 4.3437 4.8846 -0.6656 10 6 4.6577 6.0683 -1.5438 11 6 6.1353 6.0975 -1.8383 12 8 6.8620 5.2409 -1.3803 13 7 6.6493 7.0746 -2.6112 14 6 8.0278 7.1015 -2.8863 15 6 8.9830 6.1787 -2.4235 16 7 10.1559 6.5315 -2.8858 17 7 9.9967 7.6882 -3.6594 18 6 10.9949 8.3664 -4.3146 19 1 10.7608 9.2525 -4.8860 20 6 12.3065 7.9124 -4.2426 21 7 12.5911 6.8349 -3.5485 22 14 13.6646 8.8353 -5.1334 23 1 14.2349 9.8683 -4.2318 24 1 14.7315 7.8825 -5.5320 25 1 13.1068 9.4889 -6.3447 26 6 8.6735 8.0230 -3.6445 27 6 4.0071 3.6449 -1.0908 28 6 3.8804 3.2016 -2.5256 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8900 34 1 3.8333 0.9768 -0.8909 35 1 3.8340 0.9765 0.8891 36 1 3.7398 6.5961 1.8415 37 1 5.0941 5.6892 2.5568 38 1 5.3641 6.7077 1.1221 39 1 4.3711 6.9868 -1.0317 40 1 4.1026 5.9849 -2.4782 41 1 6.0682 7.7594 -2.9776 42 1 8.7828 5.3240 -1.7943 43 1 13.5066 6.5183 -3.4980 44 1 8.2233 8.8691 -4.1423 45 1 4.8421 2.8272 -2.8764 46 1 3.1344 2.4100 -2.5968 47 1 3.5731 4.0469 -3.1413 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865056448.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:52 Heat of formation + Delta-G solvation = 78.089541 kcal Electronic energy + Delta-G solvation = -29728.597388 eV Core-core repulsion = 25529.596482 eV Total energy + Delta-G solvation = -4199.000907 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.41909 -39.75378 -38.54131 -38.22681 -34.15093 -33.91679 -33.11648 -32.87835 -31.62307 -30.22321 -29.36848 -28.83035 -27.58417 -26.14354 -24.86221 -24.19551 -23.27492 -21.12770 -20.54657 -19.63524 -19.34765 -19.24820 -17.50045 -17.40087 -16.85433 -16.45948 -16.23361 -15.41211 -15.21383 -14.87354 -14.84715 -14.23269 -14.10938 -13.85146 -13.66770 -13.29301 -13.25144 -13.15843 -13.06977 -12.94075 -12.81547 -12.71243 -12.29736 -12.26671 -11.96391 -11.81961 -11.68833 -11.63541 -11.54872 -11.34395 -11.21927 -10.89544 -10.51328 -10.42364 -10.15351 -10.04448 -9.10999 -9.10143 -9.05111 -8.74191 -8.24132 -7.99717 -6.61669 -6.51270 -4.17723 1.74367 2.22505 2.76572 2.92632 3.07200 3.11732 3.13056 3.51859 3.74826 3.78015 4.01310 4.28001 4.49576 4.57337 4.59112 4.59819 4.74863 4.85758 4.87781 4.89819 5.02001 5.06440 5.18377 5.22282 5.25558 5.38321 5.44254 5.46614 5.56457 5.66958 5.67163 5.68785 5.76823 5.96559 6.08780 6.22921 6.30260 6.53798 6.54659 6.75569 6.97396 7.03911 7.08044 7.21939 7.32714 7.79437 7.91665 8.28886 8.38538 8.71262 9.01460 9.44010 9.73745 10.44861 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022961 B = 0.001930 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.161772 B =14500.907230 C =14857.219181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.065 3.935 3 O -0.405 6.405 4 C 0.314 3.686 5 N -0.373 5.373 6 N -0.293 5.293 7 C 0.100 3.900 8 C -0.074 4.074 9 C -0.208 4.208 10 C -0.057 4.057 11 C 0.497 3.503 12 O -0.527 6.527 13 N -0.630 5.630 14 C -0.055 4.055 15 C -0.035 4.035 16 N -0.261 5.261 17 N -0.145 5.145 18 C -0.324 4.324 19 H 0.115 0.885 20 C 0.046 3.954 21 N -0.772 5.772 22 Si 0.933 3.067 23 H -0.271 1.271 24 H -0.276 1.276 25 H -0.264 1.264 26 C -0.085 4.085 27 C 0.109 3.891 28 C -0.095 4.095 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.395 0.605 42 H 0.175 0.825 43 H 0.274 0.726 44 H 0.144 0.856 45 H 0.084 0.916 46 H 0.068 0.932 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.716 -7.504 3.372 23.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.324 6.324 4 C 0.154 3.846 5 N -0.158 5.158 6 N -0.114 5.114 7 C -0.068 4.068 8 C -0.133 4.133 9 C -0.219 4.219 10 C -0.098 4.098 11 C 0.283 3.717 12 O -0.403 6.403 13 N -0.274 5.274 14 C -0.161 4.161 15 C -0.210 4.210 16 N -0.092 5.092 17 N 0.087 4.913 18 C -0.456 4.456 19 H 0.133 0.867 20 C -0.171 4.171 21 N -0.398 5.398 22 Si 0.757 3.243 23 H -0.196 1.196 24 H -0.201 1.201 25 H -0.188 1.188 26 C -0.236 4.236 27 C -0.016 4.016 28 C -0.153 4.153 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.115 0.885 40 H 0.111 0.889 41 H 0.228 0.772 42 H 0.191 0.809 43 H 0.084 0.916 44 H 0.162 0.838 45 H 0.103 0.897 46 H 0.087 0.913 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -20.121 -9.343 4.735 22.684 hybrid contribution -0.319 1.219 -1.282 1.797 sum -20.439 -8.124 3.453 22.264 Atomic orbital electron populations 1.21745 0.93222 1.02442 1.03400 1.22434 0.95961 0.82220 1.00548 1.87888 1.21138 1.27861 1.95488 1.22057 0.81980 0.78156 1.02448 1.48075 1.54946 1.09124 1.03693 1.77296 1.24410 1.02441 1.07269 1.22172 0.97390 0.93784 0.93434 1.20197 1.01983 0.92991 0.98082 1.19014 1.15022 0.94748 0.93085 1.19871 0.93412 0.96970 0.99547 1.20457 0.89944 0.81861 0.79445 1.90596 1.60692 1.37955 1.51059 1.42582 1.06743 1.28252 1.49776 1.17289 0.83081 1.03227 1.12490 1.24096 0.89611 1.01916 1.05400 1.78241 1.19228 0.99835 1.11936 1.44526 1.03375 1.15571 1.27818 1.19844 0.85891 1.09993 1.29867 0.86709 1.25625 0.98858 0.96065 0.96541 1.70222 1.20280 1.18198 1.31135 0.85850 0.79753 0.79111 0.79552 1.19626 1.20143 1.18844 1.21264 0.86212 1.04239 1.11910 1.20742 0.99437 0.90889 0.90519 1.20492 1.03130 1.02581 0.89082 0.91717 0.90740 0.91709 0.92861 0.92827 0.89821 0.89715 0.90572 0.90844 0.90223 0.88530 0.88894 0.77184 0.80865 0.91556 0.83810 0.89730 0.91282 0.89563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 10.28 37.16 0.38 -0.50 16 2 C 0.07 0.44 6.66 37.16 0.25 0.69 16 3 O -0.41 -4.33 10.57 -35.23 -0.37 -4.70 16 4 C 0.31 3.33 6.87 59.85 0.41 3.74 16 5 N -0.37 -5.34 3.88 -61.89 -0.24 -5.58 16 6 N -0.29 -4.75 12.58 33.67 0.42 -4.33 16 7 C 0.10 1.51 7.22 -82.40 -0.59 0.92 16 8 C -0.07 -0.89 10.12 36.01 0.36 -0.53 16 9 C -0.21 -3.01 4.59 -105.05 -0.48 -3.49 16 10 C -0.06 -0.70 5.64 -29.03 -0.16 -0.86 16 11 C 0.50 8.55 7.79 -10.99 -0.09 8.46 16 12 O -0.53 -11.46 13.19 5.54 0.07 -11.39 16 13 N -0.63 -10.96 5.47 -10.00 -0.05 -11.02 16 14 C -0.06 -1.28 6.90 -83.84 -0.58 -1.85 16 15 C -0.03 -0.93 10.85 -17.03 -0.18 -1.11 16 16 N -0.26 -7.70 10.40 30.80 0.32 -7.38 16 17 N -0.14 -4.01 3.74 -11.41 -0.04 -4.06 16 18 C -0.32 -8.65 10.25 -14.81 -0.15 -8.81 16 19 H 0.12 2.73 7.83 -52.48 -0.41 2.32 16 20 C 0.05 1.20 5.50 -17.51 -0.10 1.10 16 21 N -0.77 -21.86 11.81 55.49 0.66 -21.21 16 22 Si 0.93 19.11 29.55 -169.99 -5.02 14.08 16 23 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 24 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 25 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 26 C -0.09 -2.02 11.49 -16.39 -0.19 -2.21 16 27 C 0.11 1.51 6.93 -82.26 -0.57 0.94 16 28 C -0.09 -0.98 9.69 36.01 0.35 -0.63 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.08 0.68 7.68 -51.93 -0.40 0.28 16 35 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.08 0.97 7.92 -51.93 -0.41 0.56 16 39 H 0.10 0.96 7.92 -51.93 -0.41 0.55 16 40 H 0.09 0.90 7.14 -51.93 -0.37 0.53 16 41 H 0.40 5.16 8.83 -40.82 -0.36 4.80 16 42 H 0.17 4.66 5.92 -52.49 -0.31 4.35 16 43 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 44 H 0.14 2.82 8.06 -52.49 -0.42 2.40 16 45 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.07 0.59 7.74 -51.93 -0.40 0.19 16 47 H 0.09 0.77 7.14 -51.93 -0.37 0.40 16 LS Contribution 401.03 15.07 6.04 6.04 Total: -1.00 -37.96 401.03 -6.37 -44.33 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -6.81 Total: 9.33 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -1.34 Total: -4.13 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: 1.06 Total: -53.57 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.30 Total: -16.09 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.08 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -37.96 -6.37 -44.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865056448.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.418 kcal (2) G-P(sol) polarization free energy of solvation -37.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds