Wall clock time and date at job start Wed Apr 1 2020 05:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47062 * 2 1 4 4 C 1.42896 * 113.99833 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47080 * 180.02562 * 4 3 2 6 6 N 1.40079 * 126.03861 * 90.02387 * 5 4 3 7 7 C 1.30844 * 108.20504 * 180.02562 * 6 5 4 8 8 C 1.50704 * 125.89818 * 180.02562 * 7 6 5 9 9 C 1.39867 * 108.20167 * 359.97438 * 7 6 5 10 10 C 1.50701 * 126.03961 * 179.97438 * 9 7 6 11 11 C 1.50702 * 109.47164 * 90.02377 * 10 9 7 12 12 O 1.21306 * 119.99631 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00322 * 179.97438 * 11 10 9 14 14 C 1.40588 * 120.00370 * 180.02562 * 13 11 10 15 15 C 1.40653 * 126.08096 * 359.96211 * 14 13 11 16 16 N 1.30910 * 108.38789 * 180.02562 * 15 14 13 17 17 N 1.40066 * 108.40730 * 359.97438 * 16 15 14 18 18 C 1.37323 * 126.07136 * 179.97438 * 17 16 15 19 19 H 1.08003 * 120.00218 * 180.02562 * 18 17 16 20 20 C 1.38984 * 119.99725 * 0.02562 * 18 17 16 21 21 N 1.31291 * 120.00266 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00017 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47255 * 90.00049 * 22 20 18 24 24 H 1.48497 * 109.47089 * 210.00594 * 22 20 18 25 25 H 1.48510 * 109.46865 * 330.00235 * 22 20 18 26 26 C 1.35678 * 126.08563 * 180.02562 * 14 13 11 27 27 C 1.34953 * 126.03535 * 270.31038 * 5 4 3 28 28 C 1.50703 * 126.12820 * 359.97438 * 27 5 4 29 29 H 1.09001 * 109.47489 * 59.99568 * 1 2 3 30 30 H 1.09000 * 109.47083 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46719 * 299.99569 * 1 2 3 32 32 H 1.09005 * 109.47176 * 240.00322 * 2 1 3 33 33 H 1.08998 * 109.47737 * 119.99711 * 2 1 3 34 34 H 1.09004 * 109.47497 * 60.00596 * 4 3 2 35 35 H 1.08998 * 109.47467 * 299.99996 * 4 3 2 36 36 H 1.08994 * 109.47440 * 269.97243 * 8 7 6 37 37 H 1.09004 * 109.46567 * 29.97704 * 8 7 6 38 38 H 1.09002 * 109.46614 * 149.96891 * 8 7 6 39 39 H 1.09000 * 109.47068 * 330.02774 * 10 9 7 40 40 H 1.09003 * 109.47414 * 210.02464 * 10 9 7 41 41 H 0.97001 * 119.99837 * 0.02562 * 13 11 10 42 42 H 1.07996 * 125.80538 * 0.07141 * 15 14 13 43 43 H 0.97003 * 119.99973 * 180.02562 * 21 20 18 44 44 H 1.07999 * 126.24592 * 0.22531 * 26 14 13 45 45 H 1.08996 * 109.46758 * 270.17519 * 28 27 5 46 46 H 1.09003 * 109.47077 * 30.17613 * 28 27 5 47 47 H 1.08993 * 109.47216 * 150.17547 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 7 3.8086 2.8756 0.0001 6 7 4.0221 3.6711 1.1332 7 6 4.3424 4.8750 0.7330 8 6 4.6568 6.0482 1.6251 9 6 4.3437 4.8846 -0.6656 10 6 4.6577 6.0683 -1.5438 11 6 6.1353 6.0975 -1.8383 12 8 6.8620 5.2409 -1.3803 13 7 6.6493 7.0746 -2.6112 14 6 8.0278 7.1015 -2.8863 15 6 8.9830 6.1787 -2.4235 16 7 10.1559 6.5315 -2.8858 17 7 9.9967 7.6882 -3.6594 18 6 10.9949 8.3664 -4.3146 19 1 10.7608 9.2525 -4.8860 20 6 12.3065 7.9124 -4.2426 21 7 12.5911 6.8349 -3.5485 22 14 13.6646 8.8353 -5.1334 23 1 14.2349 9.8683 -4.2318 24 1 14.7315 7.8825 -5.5320 25 1 13.1068 9.4889 -6.3447 26 6 8.6735 8.0230 -3.6445 27 6 4.0071 3.6449 -1.0908 28 6 3.8804 3.2016 -2.5256 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8900 34 1 3.8333 0.9768 -0.8909 35 1 3.8340 0.9765 0.8891 36 1 3.7398 6.5961 1.8415 37 1 5.0941 5.6892 2.5568 38 1 5.3641 6.7077 1.1221 39 1 4.3711 6.9868 -1.0317 40 1 4.1026 5.9849 -2.4782 41 1 6.0682 7.7594 -2.9776 42 1 8.7828 5.3240 -1.7943 43 1 13.5066 6.5183 -3.4980 44 1 8.2233 8.8691 -4.1423 45 1 4.8421 2.8272 -2.8764 46 1 3.1344 2.4100 -2.5968 47 1 3.5731 4.0469 -3.1413 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865056448.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:50 Heat of formation + Delta-G solvation = 50.192863 kcal Electronic energy + Delta-G solvation = -29729.807079 eV Core-core repulsion = 25529.596482 eV Total energy + Delta-G solvation = -4200.210598 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.44591 -41.56450 -39.97551 -39.09990 -35.82993 -34.90508 -34.85713 -33.95457 -32.29716 -32.13249 -30.53294 -29.74080 -29.21058 -27.29864 -26.54460 -25.27518 -23.79213 -22.85151 -22.16638 -21.11804 -20.64397 -20.39672 -19.24479 -18.21298 -17.90341 -17.56015 -17.32643 -17.11570 -16.77365 -16.18729 -15.90619 -15.66242 -15.21405 -15.00402 -14.87889 -14.67219 -14.48320 -14.44970 -14.13882 -14.01490 -13.76044 -13.45569 -13.43476 -13.24028 -13.13942 -13.06232 -12.93876 -12.81567 -12.80778 -12.56408 -12.42051 -12.24249 -12.07482 -11.73019 -11.45382 -10.94852 -10.81813 -10.76971 -10.55387 -10.12392 -10.04780 -9.30545 -8.43622 -8.43318 -6.19915 0.76066 1.28489 1.33277 1.41029 1.58473 1.63472 1.66964 1.95486 2.13089 2.54093 2.62595 2.80240 3.04087 3.12675 3.42771 3.69747 3.86414 3.97312 4.05229 4.11627 4.22797 4.24518 4.29359 4.41577 4.43073 4.52410 4.56420 4.64012 4.69555 4.77898 4.80008 4.80303 4.96162 4.97016 5.02417 5.04919 5.10952 5.18521 5.21858 5.26388 5.35399 5.60383 5.71921 5.86716 6.01003 6.20917 6.39689 6.74405 6.79482 6.94161 7.51170 7.60626 7.76610 8.55955 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022961 B = 0.001930 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.161772 B =14500.907230 C =14857.219181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.057 3.943 3 O -0.426 6.426 4 C 0.308 3.692 5 N -0.381 5.381 6 N -0.333 5.333 7 C 0.083 3.917 8 C -0.072 4.072 9 C -0.232 4.232 10 C -0.041 4.041 11 C 0.499 3.501 12 O -0.575 6.575 13 N -0.620 5.620 14 C -0.037 4.037 15 C -0.062 4.062 16 N -0.313 5.313 17 N -0.171 5.171 18 C -0.354 4.354 19 H 0.141 0.859 20 C -0.008 4.008 21 N -0.828 5.828 22 Si 1.018 2.982 23 H -0.265 1.265 24 H -0.279 1.279 25 H -0.243 1.243 26 C -0.081 4.081 27 C 0.103 3.897 28 C -0.092 4.092 29 H 0.059 0.941 30 H 0.097 0.903 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.108 0.892 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.128 0.872 40 H 0.130 0.870 41 H 0.421 0.579 42 H 0.162 0.838 43 H 0.275 0.725 44 H 0.189 0.811 45 H 0.076 0.924 46 H 0.087 0.913 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.762 -6.045 1.535 24.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.019 4.019 3 O -0.346 6.346 4 C 0.148 3.852 5 N -0.167 5.167 6 N -0.154 5.154 7 C -0.084 4.084 8 C -0.130 4.130 9 C -0.243 4.243 10 C -0.082 4.082 11 C 0.287 3.713 12 O -0.454 6.454 13 N -0.266 5.266 14 C -0.143 4.143 15 C -0.237 4.237 16 N -0.145 5.145 17 N 0.059 4.941 18 C -0.485 4.485 19 H 0.158 0.842 20 C -0.219 4.219 21 N -0.456 5.456 22 Si 0.837 3.163 23 H -0.190 1.190 24 H -0.204 1.204 25 H -0.166 1.166 26 C -0.231 4.231 27 C -0.023 4.023 28 C -0.150 4.150 29 H 0.078 0.922 30 H 0.116 0.884 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.126 0.874 35 H 0.104 0.896 36 H 0.120 0.880 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.146 0.854 40 H 0.147 0.853 41 H 0.258 0.742 42 H 0.179 0.821 43 H 0.084 0.916 44 H 0.206 0.794 45 H 0.095 0.905 46 H 0.105 0.895 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -22.246 -7.866 2.894 23.773 hybrid contribution 0.125 0.648 -0.634 0.916 sum -22.122 -7.218 2.260 23.379 Atomic orbital electron populations 1.21771 0.92606 1.03684 1.02547 1.22716 0.96453 0.80826 1.01919 1.87858 1.20844 1.30164 1.95712 1.22322 0.82401 0.76752 1.03716 1.48416 1.54745 1.10122 1.03433 1.77206 1.25959 1.03334 1.08916 1.22691 0.97028 0.94162 0.94527 1.20262 1.03094 0.92311 0.97335 1.19351 1.15957 0.95907 0.93121 1.19903 0.89388 0.97642 1.01270 1.21430 0.91772 0.80393 0.77701 1.90594 1.62413 1.39772 1.52595 1.42540 1.04611 1.29387 1.50045 1.17352 0.85310 1.01262 1.10414 1.24099 0.90533 1.02802 1.06277 1.78135 1.20997 1.01720 1.13672 1.44814 1.05048 1.15635 1.28573 1.20600 0.86483 1.10964 1.30469 0.84158 1.26872 1.01530 0.96646 0.96871 1.70414 1.20897 1.20705 1.33630 0.84609 0.75614 0.77401 0.78672 1.18974 1.20372 1.16580 1.22029 0.85021 1.04993 1.11094 1.21370 0.98249 0.90907 0.91794 1.20595 1.03295 1.03983 0.87127 0.92165 0.88449 0.92919 0.90915 0.91998 0.87423 0.89578 0.87999 0.91357 0.90448 0.85412 0.85254 0.74186 0.82107 0.91583 0.79442 0.90504 0.89457 0.87616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 10.28 71.98 0.74 -0.80 16 2 C 0.06 0.69 6.66 71.98 0.48 1.17 16 3 O -0.43 -8.75 10.57 -148.98 -1.57 -10.33 16 4 C 0.31 6.36 6.87 127.77 0.88 7.24 16 5 N -0.38 -10.82 3.88 -450.20 -1.75 -12.57 16 6 N -0.33 -10.91 12.58 -47.38 -0.60 -11.50 16 7 C 0.08 2.49 7.22 43.10 0.31 2.80 16 8 C -0.07 -1.68 10.12 71.24 0.72 -0.96 16 9 C -0.23 -6.42 4.59 -20.14 -0.09 -6.51 16 10 C -0.04 -0.90 5.64 29.10 0.16 -0.73 16 11 C 0.50 16.33 7.79 87.66 0.68 17.02 16 12 O -0.57 -25.27 13.19 -3.11 -0.04 -25.31 16 13 N -0.62 -20.08 5.47 -303.93 -1.66 -21.74 16 14 C -0.04 -1.68 6.90 37.73 0.26 -1.42 16 15 C -0.06 -3.41 10.85 85.42 0.93 -2.49 16 16 N -0.31 -19.18 10.40 -56.46 -0.59 -19.76 16 17 N -0.17 -9.56 3.74 -190.01 -0.71 -10.27 16 18 C -0.35 -18.88 10.25 84.01 0.86 -18.02 16 19 H 0.14 6.44 7.83 -2.91 -0.02 6.42 16 20 C -0.01 -0.43 5.50 84.95 0.47 0.04 16 21 N -0.83 -48.67 11.81 21.66 0.26 -48.42 16 22 Si 1.02 38.99 29.55 68.60 2.03 41.01 16 23 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 24 H -0.28 -10.61 7.11 99.48 0.71 -9.91 16 25 H -0.24 -8.36 7.11 99.48 0.71 -7.65 16 26 C -0.08 -3.72 11.49 83.37 0.96 -2.76 16 27 C 0.10 2.73 6.93 41.40 0.29 3.01 16 28 C -0.09 -1.71 9.69 71.24 0.69 -1.02 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 33 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.11 1.62 7.68 -2.39 -0.02 1.61 16 35 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 38 H 0.08 1.82 7.92 -2.39 -0.02 1.80 16 39 H 0.13 2.01 7.92 -2.39 -0.02 1.99 16 40 H 0.13 1.89 7.14 -2.39 -0.02 1.87 16 41 H 0.42 9.30 8.83 -92.71 -0.82 8.48 16 42 H 0.16 9.16 5.92 -2.91 -0.02 9.14 16 43 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 44 H 0.19 6.66 8.06 -2.91 -0.02 6.64 16 45 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.09 1.28 7.74 -2.39 -0.02 1.26 16 47 H 0.11 1.52 7.14 -2.39 -0.02 1.50 16 Total: -1.00 -88.41 401.03 3.89 -84.52 By element: Atomic # 1 Polarization: 37.63 SS G_CDS: 0.19 Total: 37.81 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: 8.33 Total: -3.45 kcal Atomic # 7 Polarization: -119.21 SS G_CDS: -5.05 Total: -124.26 kcal Atomic # 8 Polarization: -34.02 SS G_CDS: -1.62 Total: -35.64 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 2.03 Total: 41.01 kcal Total: -88.41 3.89 -84.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865056448.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.714 kcal (2) G-P(sol) polarization free energy of solvation -88.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds