Wall clock time and date at job start Wed Apr 1 2020 05:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47623 * 110.99795 * 2 1 4 4 C 1.52598 * 111.73159 * 178.13506 * 3 2 1 5 5 C 1.53896 * 111.19037 * 53.67335 * 4 3 2 6 6 C 1.51620 * 107.04288 * 304.94590 * 5 4 3 7 7 H 1.08998 * 109.52974 * 303.65297 * 6 5 4 8 8 C 1.45631 * 110.99897 * 238.97006 * 2 1 3 9 9 H 1.08995 * 110.81904 * 67.81259 * 8 2 1 10 10 C 1.53583 * 115.86907 * 300.34480 * 8 2 1 11 11 C 1.56625 * 101.42759 * 206.70000 * 10 8 2 12 12 N 1.45451 * 117.44550 * 178.91787 * 6 5 4 13 13 C 1.34778 * 126.42233 * 31.20709 * 12 6 5 14 14 O 1.21362 * 119.99935 * 0.02562 * 13 12 6 15 15 C 1.49311 * 120.00191 * 180.02562 * 13 12 6 16 16 O 1.21405 * 119.99824 * 359.97438 * 15 13 12 17 17 N 1.34776 * 120.00103 * 180.02562 * 15 13 12 18 18 C 1.40290 * 119.99893 * 180.02562 * 17 15 13 19 19 C 1.40718 * 126.09993 * 359.68669 * 18 17 15 20 20 N 1.30889 * 108.37377 * 179.81838 * 19 18 17 21 21 N 1.40058 * 108.43359 * 0.44198 * 20 19 18 22 22 C 1.37297 * 126.05155 * 179.69994 * 21 20 19 23 23 H 1.07998 * 119.99780 * 180.02562 * 22 21 20 24 24 C 1.39007 * 120.00121 * 0.02562 * 22 21 20 25 25 N 1.31281 * 119.99964 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99821 * 180.02562 * 24 22 21 27 27 H 1.48492 * 109.47045 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.47001 * 120.00144 * 26 24 22 29 29 H 1.48497 * 109.46677 * 239.99954 * 26 24 22 30 30 C 1.35786 * 126.09852 * 179.97438 * 18 17 15 31 31 H 1.09002 * 109.47162 * 63.95390 * 1 2 3 32 32 H 1.09004 * 109.47358 * 183.95176 * 1 2 3 33 33 H 1.08998 * 109.47345 * 303.95567 * 1 2 3 34 34 H 1.08997 * 109.03176 * 57.55944 * 3 2 1 35 35 H 1.08998 * 108.96775 * 298.67493 * 3 2 1 36 36 H 1.08994 * 109.13856 * 293.23295 * 4 3 2 37 37 H 1.08998 * 109.13405 * 174.10594 * 4 3 2 38 38 H 1.09002 * 109.95483 * 64.35685 * 5 4 3 39 39 H 1.09001 * 109.95137 * 185.53651 * 5 4 3 40 40 H 1.08996 * 110.96198 * 324.41182 * 10 8 2 41 41 H 1.09003 * 110.96119 * 88.15355 * 10 8 2 42 42 H 1.09004 * 109.35674 * 262.40435 * 11 10 8 43 43 H 1.09005 * 110.43995 * 141.32556 * 11 10 8 44 44 H 0.97006 * 119.99643 * 359.97438 * 17 15 13 45 45 H 1.08000 * 125.81691 * 359.97391 * 19 18 17 46 46 H 0.96999 * 119.99876 * 179.97438 * 25 24 22 47 47 H 1.08004 * 126.25478 * 359.96965 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9980 1.3782 0.0000 4 6 3.5231 1.3980 0.0461 5 6 4.1250 0.5419 -1.0822 6 6 3.5253 -0.8450 -0.9559 7 1 3.7205 -1.2369 0.0422 8 6 1.9909 -0.7008 -1.1650 9 1 1.7705 -0.1500 -2.0794 10 6 1.5792 -2.1742 -1.3007 11 6 2.7763 -2.7561 -2.1263 12 7 3.9262 -1.8407 -1.9375 13 6 5.1199 -1.9167 -2.5586 14 8 5.9843 -1.1008 -2.3138 15 6 5.3789 -3.0047 -3.5478 16 8 4.5143 -3.8212 -3.7923 17 7 6.5728 -3.0810 -4.1685 18 6 6.8158 -4.1030 -5.0983 19 6 5.9124 -5.1144 -5.4738 20 7 6.4941 -5.8775 -6.3640 21 7 7.7894 -5.3927 -6.5844 22 6 8.7165 -5.9266 -7.4449 23 1 9.6915 -5.4716 -7.5383 24 6 8.4002 -7.0529 -8.1958 25 7 7.2149 -7.6056 -8.0826 26 14 9.6619 -7.7797 -9.3660 27 1 10.9101 -6.9774 -9.3087 28 1 9.9556 -9.1803 -8.9696 29 1 9.1230 -7.7595 -10.7496 30 6 7.9668 -4.2958 -5.7926 31 1 -0.3633 0.4512 -0.9233 32 1 -0.3634 -1.0252 0.0708 33 1 -0.3634 0.5740 0.8524 34 1 1.6093 1.9081 0.8696 35 1 1.6632 1.8862 -0.9044 36 1 3.8567 1.0076 1.0075 37 1 3.8705 2.4256 -0.0611 38 1 3.8696 0.9708 -2.0512 39 1 5.2082 0.4901 -0.9725 40 1 1.5147 -2.6527 -0.3235 41 1 0.6377 -2.2678 -1.8420 42 1 2.5024 -2.7960 -3.1806 43 1 3.0339 -3.7541 -1.7716 44 1 7.2637 -2.4288 -3.9728 45 1 4.9090 -5.2384 -5.0941 46 1 6.9941 -8.3913 -8.6069 47 1 8.8595 -3.6912 -5.7297 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874366276.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:14 Heat of formation + Delta-G solvation = 39.554079 kcal Electronic energy + Delta-G solvation = -30576.893805 eV Core-core repulsion = 26376.221876 eV Total energy + Delta-G solvation = -4200.671930 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.10100 -40.00266 -39.10746 -37.75446 -36.36303 -34.30985 -33.91695 -33.17806 -31.06134 -30.31741 -29.19383 -28.04081 -26.84063 -25.66098 -24.52515 -23.41768 -22.39277 -21.64293 -20.99589 -20.39459 -19.55818 -19.23525 -17.63248 -17.21953 -16.74697 -16.18311 -15.60349 -15.50959 -15.41098 -15.27983 -15.06442 -14.71260 -14.44360 -14.00852 -13.91362 -13.74560 -13.61174 -13.33408 -13.09584 -12.98481 -12.76701 -12.53205 -12.31111 -12.00725 -11.76654 -11.71435 -11.53114 -11.39948 -11.30944 -11.12814 -11.08948 -11.00165 -10.80235 -10.53155 -10.37614 -10.28360 -9.23769 -9.02192 -8.87392 -8.81270 -8.77056 -8.12798 -6.77335 -6.60759 -4.27793 1.67861 2.43932 2.92230 3.03631 3.09503 3.32710 3.47309 3.67366 3.72104 3.82704 4.14850 4.31722 4.37377 4.58578 4.61088 4.66454 4.72137 4.89699 4.97973 4.99136 5.00799 5.06830 5.08688 5.14888 5.22726 5.42807 5.45187 5.51926 5.56650 5.62358 5.72945 5.80414 5.90552 5.95613 6.04296 6.19863 6.21901 6.36434 6.58618 6.68563 6.77596 6.89061 6.94956 7.16359 7.25832 7.71349 7.83608 8.12513 8.18626 8.50046 8.70108 9.31314 9.59981 10.35131 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.032602 B = 0.002031 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.634366 B =13780.812153 C =14506.721561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.520 5.520 3 C 0.049 3.951 4 C -0.114 4.114 5 C -0.123 4.123 6 C 0.140 3.860 7 H 0.084 0.916 8 C 0.059 3.941 9 H 0.058 0.942 10 C -0.125 4.125 11 C 0.112 3.888 12 N -0.589 5.589 13 C 0.532 3.468 14 O -0.527 6.527 15 C 0.486 3.514 16 O -0.519 6.519 17 N -0.584 5.584 18 C -0.068 4.068 19 C -0.027 4.027 20 N -0.261 5.261 21 N -0.139 5.139 22 C -0.321 4.321 23 H 0.118 0.882 24 C 0.046 3.954 25 N -0.768 5.768 26 Si 0.936 3.064 27 H -0.262 1.262 28 H -0.273 1.273 29 H -0.273 1.273 30 C -0.077 4.077 31 H 0.027 0.973 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.034 0.966 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.409 0.591 45 H 0.178 0.822 46 H 0.275 0.725 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.650 14.913 14.465 23.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.244 5.244 3 C -0.079 4.079 4 C -0.153 4.153 5 C -0.161 4.161 6 C 0.036 3.964 7 H 0.102 0.898 8 C -0.051 4.051 9 H 0.076 0.924 10 C -0.163 4.163 11 C -0.010 4.010 12 N -0.324 5.324 13 C 0.316 3.684 14 O -0.403 6.403 15 C 0.267 3.733 16 O -0.396 6.396 17 N -0.227 5.227 18 C -0.173 4.173 19 C -0.203 4.203 20 N -0.091 5.091 21 N 0.094 4.906 22 C -0.454 4.454 23 H 0.136 0.864 24 C -0.172 4.172 25 N -0.394 5.394 26 Si 0.760 3.240 27 H -0.186 1.186 28 H -0.199 1.199 29 H -0.199 1.199 30 C -0.229 4.229 31 H 0.045 0.955 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.052 0.948 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.109 0.891 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.104 0.896 43 H 0.103 0.897 44 H 0.244 0.756 45 H 0.194 0.806 46 H 0.086 0.914 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -10.822 13.292 13.971 22.113 hybrid contribution 0.654 1.214 -0.612 1.508 sum -10.168 14.506 13.360 22.188 Atomic orbital electron populations 1.22401 0.86987 1.02684 1.00605 1.62520 1.08136 1.14420 1.39339 1.22226 0.95825 0.88865 1.00980 1.21598 0.93862 1.00297 0.99498 1.21709 1.02429 0.93160 0.98817 1.21460 0.92866 0.89664 0.92384 0.89784 1.22678 0.94751 0.95344 0.92307 0.92386 1.22839 0.97902 0.94051 1.01487 1.22784 0.83517 0.93234 1.01497 1.47854 1.13160 1.29763 1.41590 1.19982 0.81217 0.85678 0.81558 1.90702 1.43742 1.41805 1.64052 1.19563 0.83648 0.86408 0.83681 1.90635 1.44221 1.40943 1.63786 1.42133 1.13996 1.28399 1.38185 1.17245 0.97490 0.98015 1.04594 1.24140 1.00807 0.95013 1.00296 1.78261 0.90466 1.21331 1.19074 1.44565 1.08962 1.14485 1.22569 1.19967 0.94730 1.11805 1.18857 0.86405 1.25669 0.97230 0.96308 0.97960 1.70216 1.18506 1.17212 1.33472 0.85741 0.79805 0.79193 0.79297 1.18619 1.19868 1.19874 1.21306 0.99379 0.98295 1.03910 0.95461 0.90841 0.91234 0.90395 0.94753 0.90972 0.90791 0.91837 0.89083 0.89493 0.89825 0.89648 0.89730 0.75640 0.80567 0.91423 0.83376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.34 60.06 0.56 0.70 16 2 N -0.52 -4.20 4.96 -233.52 -1.16 -5.36 16 3 C 0.05 0.35 5.36 -3.63 -0.02 0.33 16 4 C -0.11 -0.89 6.00 -26.47 -0.16 -1.05 16 5 C -0.12 -1.30 5.03 -26.96 -0.14 -1.44 16 6 C 0.14 1.56 2.65 -67.85 -0.18 1.38 16 7 H 0.08 0.97 8.13 -51.93 -0.42 0.55 16 8 C 0.06 0.54 2.11 -66.75 -0.14 0.40 16 9 H 0.06 0.58 8.07 -51.93 -0.42 0.16 16 10 C -0.12 -1.06 5.88 -24.47 -0.14 -1.21 16 11 C 0.11 1.30 5.63 -1.16 -0.01 1.30 16 12 N -0.59 -7.86 3.28 -163.06 -0.54 -8.39 16 13 C 0.53 8.50 7.83 -11.65 -0.09 8.41 16 14 O -0.53 -8.86 14.69 5.49 0.08 -8.78 16 15 C 0.49 8.94 7.83 -11.65 -0.09 8.85 16 16 O -0.52 -10.34 11.38 5.45 0.06 -10.27 16 17 N -0.58 -11.16 5.45 -10.46 -0.06 -11.21 16 18 C -0.07 -1.56 6.90 -83.93 -0.58 -2.14 16 19 C -0.03 -0.69 10.85 -17.02 -0.18 -0.88 16 20 N -0.26 -7.46 10.39 30.81 0.32 -7.14 16 21 N -0.14 -3.78 3.73 -11.40 -0.04 -3.82 16 22 C -0.32 -8.41 10.25 -14.82 -0.15 -8.56 16 23 H 0.12 2.76 7.83 -52.49 -0.41 2.35 16 24 C 0.05 1.17 5.50 -17.50 -0.10 1.07 16 25 N -0.77 -21.16 11.81 55.50 0.66 -20.50 16 26 Si 0.94 18.72 29.55 -169.99 -5.02 13.70 16 27 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 28 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 29 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 30 C -0.08 -1.83 11.50 -16.38 -0.19 -2.02 16 31 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.07 0.43 7.53 -51.93 -0.39 0.04 16 33 H 0.07 0.37 8.13 -51.93 -0.42 -0.06 16 34 H 0.08 0.47 8.13 -51.93 -0.42 0.05 16 35 H 0.03 0.25 8.11 -51.93 -0.42 -0.17 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 39 H 0.09 1.13 6.66 -51.93 -0.35 0.78 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.09 1.08 7.42 -51.93 -0.39 0.69 16 43 H 0.08 1.03 7.93 -51.93 -0.41 0.62 16 44 H 0.41 6.77 8.29 -40.82 -0.34 6.43 16 45 H 0.18 4.39 5.92 -52.49 -0.31 4.08 16 46 H 0.28 6.90 8.31 -40.82 -0.34 6.56 16 47 H 0.15 2.94 8.06 -52.48 -0.42 2.51 16 LS Contribution 376.55 15.07 5.67 5.67 Total: -1.00 -31.87 376.55 -8.42 -40.30 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -6.79 Total: 10.66 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: -1.61 Total: 5.15 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: -0.82 Total: -56.43 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: 0.14 Total: -19.05 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.02 Total: 13.70 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.87 -8.42 -40.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874366276.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.852 kcal (2) G-P(sol) polarization free energy of solvation -31.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds