Wall clock time and date at job start Wed Apr 1 2020 05:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47623 * 110.99795 * 2 1 4 4 C 1.52598 * 111.73159 * 178.13506 * 3 2 1 5 5 C 1.53896 * 111.19037 * 53.67335 * 4 3 2 6 6 C 1.51620 * 107.04288 * 304.94590 * 5 4 3 7 7 H 1.08998 * 109.52974 * 303.65297 * 6 5 4 8 8 C 1.45631 * 110.99897 * 238.97006 * 2 1 3 9 9 H 1.08995 * 110.81904 * 67.81259 * 8 2 1 10 10 C 1.53583 * 115.86907 * 300.34480 * 8 2 1 11 11 C 1.56625 * 101.42759 * 206.70000 * 10 8 2 12 12 N 1.45451 * 117.44550 * 178.91787 * 6 5 4 13 13 C 1.34778 * 126.42233 * 31.20709 * 12 6 5 14 14 O 1.21362 * 119.99935 * 0.02562 * 13 12 6 15 15 C 1.49311 * 120.00191 * 180.02562 * 13 12 6 16 16 O 1.21405 * 119.99824 * 359.97438 * 15 13 12 17 17 N 1.34776 * 120.00103 * 180.02562 * 15 13 12 18 18 C 1.40290 * 119.99893 * 180.02562 * 17 15 13 19 19 C 1.40718 * 126.09993 * 359.68669 * 18 17 15 20 20 N 1.30889 * 108.37377 * 179.81838 * 19 18 17 21 21 N 1.40058 * 108.43359 * 0.44198 * 20 19 18 22 22 C 1.37297 * 126.05155 * 179.69994 * 21 20 19 23 23 H 1.07998 * 119.99780 * 180.02562 * 22 21 20 24 24 C 1.39007 * 120.00121 * 0.02562 * 22 21 20 25 25 N 1.31281 * 119.99964 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99821 * 180.02562 * 24 22 21 27 27 H 1.48492 * 109.47045 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.47001 * 120.00144 * 26 24 22 29 29 H 1.48497 * 109.46677 * 239.99954 * 26 24 22 30 30 C 1.35786 * 126.09852 * 179.97438 * 18 17 15 31 31 H 1.09002 * 109.47162 * 63.95390 * 1 2 3 32 32 H 1.09004 * 109.47358 * 183.95176 * 1 2 3 33 33 H 1.08998 * 109.47345 * 303.95567 * 1 2 3 34 34 H 1.08997 * 109.03176 * 57.55944 * 3 2 1 35 35 H 1.08998 * 108.96775 * 298.67493 * 3 2 1 36 36 H 1.08994 * 109.13856 * 293.23295 * 4 3 2 37 37 H 1.08998 * 109.13405 * 174.10594 * 4 3 2 38 38 H 1.09002 * 109.95483 * 64.35685 * 5 4 3 39 39 H 1.09001 * 109.95137 * 185.53651 * 5 4 3 40 40 H 1.08996 * 110.96198 * 324.41182 * 10 8 2 41 41 H 1.09003 * 110.96119 * 88.15355 * 10 8 2 42 42 H 1.09004 * 109.35674 * 262.40435 * 11 10 8 43 43 H 1.09005 * 110.43995 * 141.32556 * 11 10 8 44 44 H 0.97006 * 119.99643 * 359.97438 * 17 15 13 45 45 H 1.08000 * 125.81691 * 359.97391 * 19 18 17 46 46 H 0.96999 * 119.99876 * 179.97438 * 25 24 22 47 47 H 1.08004 * 126.25478 * 359.96965 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9980 1.3782 0.0000 4 6 3.5231 1.3980 0.0461 5 6 4.1250 0.5419 -1.0822 6 6 3.5253 -0.8450 -0.9559 7 1 3.7205 -1.2369 0.0422 8 6 1.9909 -0.7008 -1.1650 9 1 1.7705 -0.1500 -2.0794 10 6 1.5792 -2.1742 -1.3007 11 6 2.7763 -2.7561 -2.1263 12 7 3.9262 -1.8407 -1.9375 13 6 5.1199 -1.9167 -2.5586 14 8 5.9843 -1.1008 -2.3138 15 6 5.3789 -3.0047 -3.5478 16 8 4.5143 -3.8212 -3.7923 17 7 6.5728 -3.0810 -4.1685 18 6 6.8158 -4.1030 -5.0983 19 6 5.9124 -5.1144 -5.4738 20 7 6.4941 -5.8775 -6.3640 21 7 7.7894 -5.3927 -6.5844 22 6 8.7165 -5.9266 -7.4449 23 1 9.6915 -5.4716 -7.5383 24 6 8.4002 -7.0529 -8.1958 25 7 7.2149 -7.6056 -8.0826 26 14 9.6619 -7.7797 -9.3660 27 1 10.9101 -6.9774 -9.3087 28 1 9.9556 -9.1803 -8.9696 29 1 9.1230 -7.7595 -10.7496 30 6 7.9668 -4.2958 -5.7926 31 1 -0.3633 0.4512 -0.9233 32 1 -0.3634 -1.0252 0.0708 33 1 -0.3634 0.5740 0.8524 34 1 1.6093 1.9081 0.8696 35 1 1.6632 1.8862 -0.9044 36 1 3.8567 1.0076 1.0075 37 1 3.8705 2.4256 -0.0611 38 1 3.8696 0.9708 -2.0512 39 1 5.2082 0.4901 -0.9725 40 1 1.5147 -2.6527 -0.3235 41 1 0.6377 -2.2678 -1.8420 42 1 2.5024 -2.7960 -3.1806 43 1 3.0339 -3.7541 -1.7716 44 1 7.2637 -2.4288 -3.9728 45 1 4.9090 -5.2384 -5.0941 46 1 6.9941 -8.3913 -8.6069 47 1 8.8595 -3.6912 -5.7297 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874366276.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:11 Heat of formation + Delta-G solvation = 16.657304 kcal Electronic energy + Delta-G solvation = -30577.886684 eV Core-core repulsion = 26376.221876 eV Total energy + Delta-G solvation = -4201.664809 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.26629 -41.60344 -40.49872 -39.14647 -37.32283 -35.99565 -35.00048 -34.62971 -32.30910 -32.01309 -30.03507 -29.82182 -27.46286 -27.29041 -26.04186 -24.22215 -23.61660 -22.84160 -22.40902 -21.40225 -21.16634 -20.61352 -19.37430 -18.52626 -17.94429 -17.45614 -17.29252 -16.80118 -16.58926 -16.33809 -15.95729 -15.83826 -15.68828 -15.44189 -15.22671 -14.89368 -14.84268 -14.59415 -14.58371 -14.19107 -13.53881 -13.52320 -13.38667 -13.27183 -13.08663 -12.95174 -12.94620 -12.59849 -12.51673 -12.43793 -12.03261 -12.02818 -11.92472 -11.80611 -11.70731 -11.23301 -11.08746 -10.87714 -10.41883 -10.14666 -9.88867 -9.42751 -8.62613 -8.49635 -6.27094 0.26234 1.17075 1.27706 1.41047 1.59567 1.70904 2.01796 2.09252 2.37372 2.51981 2.80098 2.92348 3.06904 3.26159 3.43825 3.59202 3.82122 3.98216 4.06779 4.14120 4.26631 4.29618 4.38819 4.46112 4.51436 4.53101 4.56903 4.70849 4.82025 4.83994 4.87596 4.90126 4.95653 4.97779 5.04015 5.08448 5.09893 5.11788 5.21991 5.24306 5.30512 5.36317 5.90734 5.99045 6.01943 6.09921 6.19386 6.37206 6.64969 6.74472 7.06087 7.40586 7.62277 8.49806 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.032602 B = 0.002031 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.634366 B =13780.812153 C =14506.721561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.526 5.526 3 C 0.048 3.952 4 C -0.108 4.108 5 C -0.120 4.120 6 C 0.132 3.868 7 H 0.084 0.916 8 C 0.070 3.930 9 H 0.051 0.949 10 C -0.110 4.110 11 C 0.106 3.894 12 N -0.584 5.584 13 C 0.535 3.465 14 O -0.537 6.537 15 C 0.488 3.512 16 O -0.534 6.534 17 N -0.584 5.584 18 C -0.055 4.055 19 C -0.047 4.047 20 N -0.307 5.307 21 N -0.163 5.163 22 C -0.352 4.352 23 H 0.141 0.859 24 C -0.006 4.006 25 N -0.821 5.821 26 Si 1.020 2.980 27 H -0.242 1.242 28 H -0.272 1.272 29 H -0.272 1.272 30 C -0.076 4.076 31 H 0.028 0.972 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.034 0.966 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.054 0.946 39 H 0.070 0.930 40 H 0.097 0.903 41 H 0.103 0.897 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.422 0.578 45 H 0.177 0.823 46 H 0.278 0.722 47 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.696 16.562 15.588 25.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.250 5.250 3 C -0.079 4.079 4 C -0.146 4.146 5 C -0.159 4.159 6 C 0.029 3.971 7 H 0.102 0.898 8 C -0.041 4.041 9 H 0.069 0.931 10 C -0.148 4.148 11 C -0.016 4.016 12 N -0.317 5.317 13 C 0.318 3.682 14 O -0.415 6.415 15 C 0.269 3.731 16 O -0.411 6.411 17 N -0.228 5.228 18 C -0.161 4.161 19 C -0.222 4.222 20 N -0.139 5.139 21 N 0.069 4.931 22 C -0.483 4.483 23 H 0.159 0.841 24 C -0.218 4.218 25 N -0.448 5.448 26 Si 0.839 3.161 27 H -0.164 1.164 28 H -0.197 1.197 29 H -0.197 1.197 30 C -0.227 4.227 31 H 0.047 0.953 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.115 0.885 35 H 0.053 0.947 36 H 0.092 0.908 37 H 0.106 0.894 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.116 0.884 41 H 0.122 0.878 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.260 0.740 45 H 0.193 0.807 46 H 0.088 0.912 47 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -10.896 14.987 15.142 23.929 hybrid contribution 0.555 0.816 -0.809 1.276 sum -10.341 15.803 14.333 23.709 Atomic orbital electron populations 1.22470 0.85575 1.03409 1.01269 1.62540 1.09398 1.14809 1.38287 1.22276 0.95162 0.88611 1.01866 1.21573 0.94387 1.00456 0.98176 1.21665 1.01298 0.93338 0.99557 1.21687 0.94605 0.89348 0.91425 0.89814 1.22548 0.93035 0.95788 0.92683 0.93093 1.22799 0.97067 0.93298 1.01620 1.22903 0.84166 0.93011 1.01507 1.47954 1.12522 1.30340 1.40864 1.19417 0.82222 0.84978 0.81612 1.90704 1.44349 1.41884 1.64531 1.20129 0.82981 0.86558 0.83408 1.90627 1.44683 1.41684 1.64132 1.42067 1.14931 1.28005 1.37846 1.17280 0.96604 0.97852 1.04374 1.24247 1.01283 0.96032 1.00677 1.78158 0.91969 1.23140 1.20611 1.44843 1.08773 1.15698 1.23827 1.20687 0.95607 1.12720 1.19323 0.84134 1.26888 0.99295 0.96236 0.99366 1.70379 1.21153 1.18127 1.35168 0.84524 0.77325 0.78133 0.76160 1.16444 1.19706 1.19692 1.21988 1.00645 0.97479 1.02539 0.95330 0.90254 0.89927 0.88532 0.94732 0.90823 0.89366 0.92752 0.91137 0.88429 0.87808 0.90860 0.90454 0.74048 0.80669 0.91233 0.79608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.34 127.69 1.19 1.39 16 2 N -0.53 -7.11 4.96 -892.74 -4.43 -11.54 16 3 C 0.05 0.57 5.36 86.03 0.46 1.03 16 4 C -0.11 -1.47 6.00 30.76 0.18 -1.29 16 5 C -0.12 -2.44 5.03 30.44 0.15 -2.29 16 6 C 0.13 2.81 2.65 45.61 0.12 2.93 16 7 H 0.08 1.83 8.13 -2.39 -0.02 1.81 16 8 C 0.07 1.15 2.11 46.22 0.10 1.25 16 9 H 0.05 0.94 8.07 -2.39 -0.02 0.92 16 10 C -0.11 -1.66 5.88 32.06 0.19 -1.47 16 11 C 0.11 2.42 5.63 87.32 0.49 2.91 16 12 N -0.58 -15.34 3.28 -788.17 -2.59 -17.93 16 13 C 0.53 17.04 7.83 87.23 0.68 17.73 16 14 O -0.54 -17.91 14.69 -3.29 -0.05 -17.96 16 15 C 0.49 18.05 7.83 87.23 0.68 18.74 16 16 O -0.53 -21.72 11.38 -3.42 -0.04 -21.76 16 17 N -0.58 -22.18 5.45 -305.33 -1.66 -23.85 16 18 C -0.05 -2.56 6.90 37.82 0.26 -2.30 16 19 C -0.05 -2.51 10.85 85.44 0.93 -1.58 16 20 N -0.31 -18.26 10.39 -56.43 -0.59 -18.84 16 21 N -0.16 -9.04 3.73 -189.98 -0.71 -9.75 16 22 C -0.35 -18.55 10.25 84.02 0.86 -17.69 16 23 H 0.14 6.44 7.83 -2.91 -0.02 6.42 16 24 C -0.01 -0.30 5.50 84.96 0.47 0.17 16 25 N -0.82 -46.75 11.81 21.66 0.26 -46.49 16 26 Si 1.02 38.27 29.55 68.60 2.03 40.30 16 27 H -0.24 -8.16 7.11 99.48 0.71 -7.45 16 28 H -0.27 -10.03 7.11 99.48 0.71 -9.33 16 29 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 30 C -0.08 -3.55 11.50 83.41 0.96 -2.59 16 31 H 0.03 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.08 0.67 7.53 -2.38 -0.02 0.65 16 33 H 0.08 0.59 8.13 -2.39 -0.02 0.58 16 34 H 0.10 0.84 8.13 -2.39 -0.02 0.82 16 35 H 0.03 0.42 8.11 -2.39 -0.02 0.40 16 36 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.05 1.19 8.13 -2.39 -0.02 1.17 16 39 H 0.07 1.73 6.66 -2.39 -0.02 1.71 16 40 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.07 1.86 7.42 -2.38 -0.02 1.84 16 43 H 0.08 1.88 7.93 -2.38 -0.02 1.87 16 44 H 0.42 13.66 8.29 -92.70 -0.77 12.89 16 45 H 0.18 9.14 5.92 -2.91 -0.02 9.13 16 46 H 0.28 14.47 8.31 -92.71 -0.77 13.70 16 47 H 0.19 7.02 8.06 -2.91 -0.02 7.00 16 Total: -1.00 -71.59 376.55 0.19 -71.40 By element: Atomic # 1 Polarization: 39.25 SS G_CDS: 0.23 Total: 39.48 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: 7.73 Total: 16.94 kcal Atomic # 7 Polarization: -118.68 SS G_CDS: -9.72 Total: -128.40 kcal Atomic # 8 Polarization: -39.64 SS G_CDS: -0.09 Total: -39.72 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 2.03 Total: 40.30 kcal Total: -71.59 0.19 -71.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874366276.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.060 kcal (2) G-P(sol) polarization free energy of solvation -71.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds