Wall clock time and date at job start Wed Apr 1 2020 05:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47614 * 111.00352 * 2 1 4 4 C 1.52590 * 111.73854 * 181.92612 * 3 2 1 5 5 C 1.53896 * 111.15051 * 306.23944 * 4 3 2 6 6 C 1.51623 * 106.97424 * 55.03742 * 5 4 3 7 7 H 1.08994 * 109.53117 * 55.42165 * 6 5 4 8 8 C 1.45617 * 111.00277 * 120.97363 * 2 1 3 9 9 H 1.08999 * 111.27653 * 292.44587 * 8 2 1 10 10 C 1.53573 * 115.87530 * 60.33171 * 8 2 1 11 11 C 1.55338 * 101.79454 * 153.72953 * 10 8 2 12 12 N 1.45445 * 117.44284 * 181.15176 * 6 5 4 13 13 C 1.34778 * 126.42253 * 328.83096 * 12 6 5 14 14 O 1.21371 * 119.99615 * 0.02562 * 13 12 6 15 15 C 1.49303 * 120.00309 * 180.02562 * 13 12 6 16 16 O 1.21409 * 120.00165 * 359.97438 * 15 13 12 17 17 N 1.34780 * 119.99963 * 180.02562 * 15 13 12 18 18 C 1.40293 * 119.99782 * 179.97438 * 17 15 13 19 19 C 1.40731 * 126.10192 * 359.69076 * 18 17 15 20 20 N 1.30875 * 108.37341 * 179.85192 * 19 18 17 21 21 N 1.40054 * 108.44063 * 0.40458 * 20 19 18 22 22 C 1.37294 * 126.05972 * 179.74098 * 21 20 19 23 23 H 1.07997 * 120.00144 * 174.12891 * 22 21 20 24 24 C 1.39008 * 119.99465 * 354.12591 * 22 21 20 25 25 N 1.31278 * 120.00509 * 5.93485 * 24 22 21 26 26 Si 1.86809 * 119.99654 * 185.93830 * 24 22 21 27 27 H 1.48496 * 109.47241 * 94.98224 * 26 24 22 28 28 H 1.48504 * 109.46777 * 214.97832 * 26 24 22 29 29 H 1.48498 * 109.47166 * 334.97679 * 26 24 22 30 30 C 1.35788 * 126.10020 * 179.97438 * 18 17 15 31 31 H 1.09005 * 109.46539 * 299.02536 * 1 2 3 32 32 H 1.09002 * 109.47617 * 59.02269 * 1 2 3 33 33 H 1.09000 * 109.47136 * 179.03185 * 1 2 3 34 34 H 1.09004 * 109.07234 * 61.30832 * 3 2 1 35 35 H 1.09008 * 108.97801 * 302.47360 * 3 2 1 36 36 H 1.08998 * 109.13663 * 185.82938 * 4 3 2 37 37 H 1.09002 * 109.13597 * 66.65374 * 4 3 2 38 38 H 1.09000 * 109.95189 * 174.40206 * 5 4 3 39 39 H 1.09000 * 109.94747 * 295.67108 * 5 4 3 40 40 H 1.09006 * 110.96276 * 35.60492 * 10 8 2 41 41 H 1.08996 * 110.96822 * 271.85636 * 10 8 2 42 42 H 1.09007 * 109.91858 * 218.23194 * 11 10 8 43 43 H 1.08999 * 110.09520 * 97.01153 * 11 10 8 44 44 H 0.96995 * 119.99963 * 359.97438 * 17 15 13 45 45 H 1.07995 * 125.80579 * 359.97438 * 19 18 17 46 46 H 0.96999 * 120.00569 * 180.02562 * 25 24 22 47 47 H 1.07995 * 126.25070 * 0.02562 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9981 1.3781 0.0000 4 6 3.5231 1.3979 -0.0476 5 6 4.1251 0.5428 1.0814 6 6 3.5236 -0.8433 0.9558 7 1 3.7038 -1.2291 -0.0475 8 6 1.9909 -0.6996 1.1656 9 1 1.7706 -0.1563 2.0845 10 6 1.5926 -2.1772 1.2943 11 6 2.7709 -2.7522 2.1274 12 7 3.9223 -1.8386 1.9385 13 6 5.1151 -1.9153 2.5612 14 8 5.9803 -1.0997 2.3176 15 6 5.3722 -3.0035 3.5506 16 8 4.5066 -3.8190 3.7946 17 7 6.5649 -3.0798 4.1737 18 6 6.8063 -4.1020 5.1038 19 6 5.8979 -5.1065 5.4863 20 7 6.4818 -5.8764 6.3690 21 7 7.7768 -5.3918 6.5918 22 6 8.7022 -5.9255 7.4543 23 1 9.7067 -5.5299 7.4809 24 6 8.3459 -6.9750 8.2933 25 7 7.1629 -7.5330 8.1806 26 14 9.5505 -7.5914 9.5811 27 1 9.2710 -6.9263 10.8790 28 1 9.4010 -9.0608 9.7357 29 1 10.9372 -7.2774 9.1524 30 6 7.9562 -4.2955 5.7995 31 1 -0.3632 0.4987 0.8987 32 1 -0.3634 0.5289 -0.8811 33 1 -0.3633 -1.0275 -0.0174 34 1 1.6640 1.8879 0.9037 35 1 1.6085 1.9074 -0.8696 36 1 3.8706 2.4256 0.0585 37 1 3.8557 1.0059 -1.0088 38 1 5.2082 0.4897 0.9707 39 1 3.8698 0.9728 2.0500 40 1 1.5384 -2.6532 0.3152 41 1 0.6490 -2.2816 1.8298 42 1 3.0260 -3.7501 1.7703 43 1 2.4987 -2.7937 3.1820 44 1 7.2564 -2.4280 3.9790 45 1 4.8912 -5.2233 5.1132 46 1 6.9142 -8.2651 8.7663 47 1 8.8493 -3.6913 5.7378 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874366277.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:30 Heat of formation + Delta-G solvation = 39.599839 kcal Electronic energy + Delta-G solvation = -30584.256982 eV Core-core repulsion = 26383.587036 eV Total energy + Delta-G solvation = -4200.669946 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -41.13349 -40.01052 -39.11005 -37.75255 -36.39820 -34.31320 -33.92365 -33.17965 -31.07659 -30.31924 -29.22933 -28.04311 -26.84995 -25.65470 -24.51597 -23.41121 -22.38914 -21.63756 -20.99509 -20.39991 -19.55935 -19.23759 -17.63388 -17.22494 -16.75958 -16.18667 -15.60519 -15.50357 -15.41450 -15.27814 -15.06778 -14.71024 -14.45196 -14.01299 -13.92305 -13.74437 -13.62428 -13.33825 -13.10208 -12.97830 -12.76622 -12.52812 -12.29445 -12.00799 -11.78772 -11.72580 -11.53241 -11.41443 -11.30172 -11.11571 -11.08925 -10.99886 -10.79737 -10.55063 -10.37410 -10.27052 -9.23476 -9.01918 -8.87345 -8.81852 -8.77261 -8.12719 -6.77396 -6.61204 -4.27918 1.67804 2.43925 2.93017 3.03534 3.08776 3.32743 3.47556 3.67308 3.72289 3.82764 4.15180 4.34069 4.37308 4.58477 4.60969 4.66630 4.72921 4.89630 4.96954 4.99231 5.00881 5.06912 5.09230 5.15683 5.22737 5.42825 5.44997 5.51965 5.56603 5.62275 5.72825 5.80319 5.90786 5.95815 6.04039 6.19921 6.22104 6.36672 6.58470 6.68748 6.77655 6.89283 6.94883 7.16290 7.25793 7.71347 7.83629 8.12491 8.18611 8.50047 8.70009 9.31420 9.59900 10.34902 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.032238 B = 0.002034 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.321084 B =13761.094181 C =14475.344602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.519 5.519 3 C 0.048 3.952 4 C -0.114 4.114 5 C -0.123 4.123 6 C 0.139 3.861 7 H 0.085 0.915 8 C 0.058 3.942 9 H 0.059 0.941 10 C -0.125 4.125 11 C 0.112 3.888 12 N -0.589 5.589 13 C 0.532 3.468 14 O -0.527 6.527 15 C 0.486 3.514 16 O -0.519 6.519 17 N -0.584 5.584 18 C -0.068 4.068 19 C -0.027 4.027 20 N -0.261 5.261 21 N -0.139 5.139 22 C -0.322 4.322 23 H 0.118 0.882 24 C 0.047 3.953 25 N -0.767 5.767 26 Si 0.936 3.064 27 H -0.271 1.271 28 H -0.276 1.276 29 H -0.263 1.263 30 C -0.077 4.077 31 H 0.027 0.973 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.034 0.966 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.063 0.937 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.409 0.591 45 H 0.178 0.822 46 H 0.276 0.724 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.625 14.913 -14.496 23.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.243 5.243 3 C -0.079 4.079 4 C -0.153 4.153 5 C -0.161 4.161 6 C 0.035 3.965 7 H 0.103 0.897 8 C -0.052 4.052 9 H 0.077 0.923 10 C -0.164 4.164 11 C -0.010 4.010 12 N -0.323 5.323 13 C 0.316 3.684 14 O -0.403 6.403 15 C 0.267 3.733 16 O -0.396 6.396 17 N -0.227 5.227 18 C -0.174 4.174 19 C -0.202 4.202 20 N -0.092 5.092 21 N 0.094 4.906 22 C -0.455 4.455 23 H 0.136 0.864 24 C -0.171 4.171 25 N -0.394 5.394 26 Si 0.759 3.241 27 H -0.196 1.196 28 H -0.201 1.201 29 H -0.187 1.187 30 C -0.228 4.228 31 H 0.045 0.955 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.053 0.947 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.109 0.891 39 H 0.082 0.918 40 H 0.105 0.895 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.105 0.895 44 H 0.244 0.756 45 H 0.194 0.806 46 H 0.086 0.914 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -10.802 13.287 -14.005 22.122 hybrid contribution 0.629 1.259 0.663 1.556 sum -10.173 14.545 -13.342 22.205 Atomic orbital electron populations 1.22405 0.86993 1.02586 1.00722 1.62549 1.08154 1.14444 1.39146 1.22224 0.95834 0.88865 1.01002 1.21602 0.93854 1.00310 0.99497 1.21707 1.02413 0.93141 0.98808 1.21423 0.92925 0.89663 0.92459 0.89743 1.22659 0.94893 0.95299 0.92362 0.92304 1.22634 0.98141 0.94124 1.01461 1.22576 0.83580 0.93384 1.01465 1.47854 1.13179 1.29875 1.41410 1.19984 0.81226 0.85667 0.81570 1.90705 1.43675 1.41810 1.64110 1.19562 0.83663 0.86398 0.83668 1.90636 1.44119 1.40999 1.63831 1.42133 1.14080 1.28403 1.38101 1.17252 0.97277 0.98302 1.04527 1.24135 1.00683 0.95230 1.00180 1.78246 0.90843 1.20903 1.19205 1.44556 1.09200 1.14278 1.22552 1.19924 0.92663 1.17370 1.15507 0.86441 1.25667 0.97134 0.95969 0.98326 1.70209 1.18218 1.18276 1.32669 0.85794 0.79895 0.78406 0.79978 1.19596 1.20064 1.18711 1.21311 0.99435 0.98080 1.03995 0.95469 0.91201 0.90844 0.94728 0.90415 0.90786 0.90969 0.89084 0.91827 0.89457 0.89898 0.89840 0.89518 0.75640 0.80567 0.91376 0.83368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.40 60.06 0.56 0.70 16 2 N -0.52 -4.19 4.96 -233.65 -1.16 -5.35 16 3 C 0.05 0.35 5.36 -3.64 -0.02 0.33 16 4 C -0.11 -0.89 5.99 -26.47 -0.16 -1.05 16 5 C -0.12 -1.29 5.03 -26.96 -0.14 -1.43 16 6 C 0.14 1.55 2.64 -67.94 -0.18 1.37 16 7 H 0.08 0.97 8.12 -51.93 -0.42 0.55 16 8 C 0.06 0.53 2.12 -66.86 -0.14 0.39 16 9 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 10 C -0.13 -1.07 5.76 -25.19 -0.14 -1.22 16 11 C 0.11 1.30 5.59 -1.87 -0.01 1.29 16 12 N -0.59 -7.84 3.28 -164.00 -0.54 -8.38 16 13 C 0.53 8.49 7.83 -11.65 -0.09 8.40 16 14 O -0.53 -8.86 14.69 5.48 0.08 -8.78 16 15 C 0.49 8.94 7.83 -11.65 -0.09 8.85 16 16 O -0.52 -10.33 11.38 5.45 0.06 -10.27 16 17 N -0.58 -11.15 5.45 -10.45 -0.06 -11.21 16 18 C -0.07 -1.57 6.90 -83.92 -0.58 -2.15 16 19 C -0.03 -0.68 10.85 -17.02 -0.18 -0.87 16 20 N -0.26 -7.48 10.41 30.81 0.32 -7.16 16 21 N -0.14 -3.78 3.73 -11.40 -0.04 -3.82 16 22 C -0.32 -8.44 10.24 -14.82 -0.15 -8.59 16 23 H 0.12 2.75 7.84 -52.49 -0.41 2.34 16 24 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 25 N -0.77 -21.15 11.84 55.50 0.66 -20.49 16 26 Si 0.94 18.72 29.56 -169.99 -5.02 13.70 16 27 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 28 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 29 H -0.26 -5.03 7.11 56.52 0.40 -4.62 16 30 C -0.08 -1.81 11.50 -16.38 -0.19 -2.00 16 31 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.43 7.44 -51.93 -0.39 0.04 16 34 H 0.03 0.26 8.12 -51.93 -0.42 -0.17 16 35 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.09 1.12 6.67 -51.93 -0.35 0.78 16 39 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.08 1.02 7.94 -51.92 -0.41 0.60 16 43 H 0.09 1.09 7.40 -51.93 -0.38 0.71 16 44 H 0.41 6.77 8.29 -40.82 -0.34 6.43 16 45 H 0.18 4.39 5.92 -52.49 -0.31 4.08 16 46 H 0.28 6.92 8.31 -40.82 -0.34 6.59 16 47 H 0.15 2.94 8.06 -52.49 -0.42 2.51 16 LS Contribution 376.45 15.07 5.67 5.67 Total: -1.00 -31.85 376.45 -8.43 -40.27 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -6.79 Total: 10.68 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: -1.61 Total: 5.12 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: -0.82 Total: -56.40 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: 0.14 Total: -19.04 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.02 Total: 13.70 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.85 -8.43 -40.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874366277.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.874 kcal (2) G-P(sol) polarization free energy of solvation -31.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds