Wall clock time and date at job start Wed Apr 1 2020 05:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47614 * 111.00352 * 2 1 4 4 C 1.52590 * 111.73854 * 181.92612 * 3 2 1 5 5 C 1.53896 * 111.15051 * 306.23944 * 4 3 2 6 6 C 1.51623 * 106.97424 * 55.03742 * 5 4 3 7 7 H 1.08994 * 109.53117 * 55.42165 * 6 5 4 8 8 C 1.45617 * 111.00277 * 120.97363 * 2 1 3 9 9 H 1.08999 * 111.27653 * 292.44587 * 8 2 1 10 10 C 1.53573 * 115.87530 * 60.33171 * 8 2 1 11 11 C 1.55338 * 101.79454 * 153.72953 * 10 8 2 12 12 N 1.45445 * 117.44284 * 181.15176 * 6 5 4 13 13 C 1.34778 * 126.42253 * 328.83096 * 12 6 5 14 14 O 1.21371 * 119.99615 * 0.02562 * 13 12 6 15 15 C 1.49303 * 120.00309 * 180.02562 * 13 12 6 16 16 O 1.21409 * 120.00165 * 359.97438 * 15 13 12 17 17 N 1.34780 * 119.99963 * 180.02562 * 15 13 12 18 18 C 1.40293 * 119.99782 * 179.97438 * 17 15 13 19 19 C 1.40731 * 126.10192 * 359.69076 * 18 17 15 20 20 N 1.30875 * 108.37341 * 179.85192 * 19 18 17 21 21 N 1.40054 * 108.44063 * 0.40458 * 20 19 18 22 22 C 1.37294 * 126.05972 * 179.74098 * 21 20 19 23 23 H 1.07997 * 120.00144 * 174.12891 * 22 21 20 24 24 C 1.39008 * 119.99465 * 354.12591 * 22 21 20 25 25 N 1.31278 * 120.00509 * 5.93485 * 24 22 21 26 26 Si 1.86809 * 119.99654 * 185.93830 * 24 22 21 27 27 H 1.48496 * 109.47241 * 94.98224 * 26 24 22 28 28 H 1.48504 * 109.46777 * 214.97832 * 26 24 22 29 29 H 1.48498 * 109.47166 * 334.97679 * 26 24 22 30 30 C 1.35788 * 126.10020 * 179.97438 * 18 17 15 31 31 H 1.09005 * 109.46539 * 299.02536 * 1 2 3 32 32 H 1.09002 * 109.47617 * 59.02269 * 1 2 3 33 33 H 1.09000 * 109.47136 * 179.03185 * 1 2 3 34 34 H 1.09004 * 109.07234 * 61.30832 * 3 2 1 35 35 H 1.09008 * 108.97801 * 302.47360 * 3 2 1 36 36 H 1.08998 * 109.13663 * 185.82938 * 4 3 2 37 37 H 1.09002 * 109.13597 * 66.65374 * 4 3 2 38 38 H 1.09000 * 109.95189 * 174.40206 * 5 4 3 39 39 H 1.09000 * 109.94747 * 295.67108 * 5 4 3 40 40 H 1.09006 * 110.96276 * 35.60492 * 10 8 2 41 41 H 1.08996 * 110.96822 * 271.85636 * 10 8 2 42 42 H 1.09007 * 109.91858 * 218.23194 * 11 10 8 43 43 H 1.08999 * 110.09520 * 97.01153 * 11 10 8 44 44 H 0.96995 * 119.99963 * 359.97438 * 17 15 13 45 45 H 1.07995 * 125.80579 * 359.97438 * 19 18 17 46 46 H 0.96999 * 120.00569 * 180.02562 * 25 24 22 47 47 H 1.07995 * 126.25070 * 0.02562 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9981 1.3781 0.0000 4 6 3.5231 1.3979 -0.0476 5 6 4.1251 0.5428 1.0814 6 6 3.5236 -0.8433 0.9558 7 1 3.7038 -1.2291 -0.0475 8 6 1.9909 -0.6996 1.1656 9 1 1.7706 -0.1563 2.0845 10 6 1.5926 -2.1772 1.2943 11 6 2.7709 -2.7522 2.1274 12 7 3.9223 -1.8386 1.9385 13 6 5.1151 -1.9153 2.5612 14 8 5.9803 -1.0997 2.3176 15 6 5.3722 -3.0035 3.5506 16 8 4.5066 -3.8190 3.7946 17 7 6.5649 -3.0798 4.1737 18 6 6.8063 -4.1020 5.1038 19 6 5.8979 -5.1065 5.4863 20 7 6.4818 -5.8764 6.3690 21 7 7.7768 -5.3918 6.5918 22 6 8.7022 -5.9255 7.4543 23 1 9.7067 -5.5299 7.4809 24 6 8.3459 -6.9750 8.2933 25 7 7.1629 -7.5330 8.1806 26 14 9.5505 -7.5914 9.5811 27 1 9.2710 -6.9263 10.8790 28 1 9.4010 -9.0608 9.7357 29 1 10.9372 -7.2774 9.1524 30 6 7.9562 -4.2955 5.7995 31 1 -0.3632 0.4987 0.8987 32 1 -0.3634 0.5289 -0.8811 33 1 -0.3633 -1.0275 -0.0174 34 1 1.6640 1.8879 0.9037 35 1 1.6085 1.9074 -0.8696 36 1 3.8706 2.4256 0.0585 37 1 3.8557 1.0059 -1.0088 38 1 5.2082 0.4897 0.9707 39 1 3.8698 0.9728 2.0500 40 1 1.5384 -2.6532 0.3152 41 1 0.6490 -2.2816 1.8298 42 1 3.0260 -3.7501 1.7703 43 1 2.4987 -2.7937 3.1820 44 1 7.2564 -2.4280 3.9790 45 1 4.8912 -5.2233 5.1132 46 1 6.9142 -8.2651 8.7663 47 1 8.8493 -3.6913 5.7378 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874366277.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:24 Heat of formation + Delta-G solvation = 16.722255 kcal Electronic energy + Delta-G solvation = -30585.249028 eV Core-core repulsion = 26383.587036 eV Total energy + Delta-G solvation = -4201.661992 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -42.28334 -41.61714 -40.50984 -39.14464 -37.35022 -35.99919 -35.00359 -34.63602 -32.31066 -32.03142 -30.06153 -29.83192 -27.47091 -27.28695 -26.03117 -24.21048 -23.61067 -22.83969 -22.40745 -21.40095 -21.16995 -20.61669 -19.37440 -18.52833 -17.95212 -17.45268 -17.29531 -16.80356 -16.59911 -16.33686 -15.96040 -15.83780 -15.68562 -15.44878 -15.22602 -14.89000 -14.85467 -14.59915 -14.58800 -14.19506 -13.53824 -13.52147 -13.38881 -13.27347 -13.07315 -13.01558 -12.87132 -12.60716 -12.52359 -12.44618 -12.07347 -12.01234 -11.91030 -11.80614 -11.70273 -11.22870 -11.08182 -10.87038 -10.41925 -10.14464 -9.88719 -9.43548 -8.62606 -8.50049 -6.27166 0.26271 1.17186 1.28475 1.40940 1.58551 1.71202 2.01869 2.09431 2.37171 2.51991 2.80093 2.93527 3.05946 3.26118 3.45776 3.60027 3.82243 3.98535 4.06799 4.14037 4.27498 4.29691 4.38865 4.46454 4.51753 4.53029 4.57562 4.70722 4.82094 4.84146 4.87336 4.89991 4.95795 4.97972 5.04144 5.08517 5.10033 5.11926 5.21995 5.24356 5.30442 5.36597 5.90761 5.98986 6.01957 6.09964 6.19453 6.37277 6.65002 6.74526 7.06124 7.40732 7.62245 8.49485 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.032238 B = 0.002034 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.321084 B =13761.094181 C =14475.344602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.525 5.525 3 C 0.048 3.952 4 C -0.108 4.108 5 C -0.120 4.120 6 C 0.131 3.869 7 H 0.085 0.915 8 C 0.069 3.931 9 H 0.052 0.948 10 C -0.111 4.111 11 C 0.107 3.893 12 N -0.583 5.583 13 C 0.535 3.465 14 O -0.537 6.537 15 C 0.488 3.512 16 O -0.534 6.534 17 N -0.584 5.584 18 C -0.055 4.055 19 C -0.047 4.047 20 N -0.308 5.308 21 N -0.163 5.163 22 C -0.353 4.353 23 H 0.141 0.859 24 C -0.005 4.005 25 N -0.820 5.820 26 Si 1.019 2.981 27 H -0.267 1.267 28 H -0.275 1.275 29 H -0.244 1.244 30 C -0.075 4.075 31 H 0.028 0.972 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.035 0.965 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.054 0.946 40 H 0.097 0.903 41 H 0.103 0.897 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.422 0.578 45 H 0.177 0.823 46 H 0.278 0.722 47 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.680 16.579 -15.582 25.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.249 5.249 3 C -0.079 4.079 4 C -0.146 4.146 5 C -0.158 4.158 6 C 0.028 3.972 7 H 0.103 0.897 8 C -0.042 4.042 9 H 0.070 0.930 10 C -0.149 4.149 11 C -0.015 4.015 12 N -0.316 5.316 13 C 0.318 3.682 14 O -0.415 6.415 15 C 0.269 3.731 16 O -0.411 6.411 17 N -0.229 5.229 18 C -0.161 4.161 19 C -0.222 4.222 20 N -0.140 5.140 21 N 0.068 4.932 22 C -0.485 4.485 23 H 0.158 0.842 24 C -0.217 4.217 25 N -0.448 5.448 26 Si 0.838 3.162 27 H -0.192 1.192 28 H -0.200 1.200 29 H -0.166 1.166 30 C -0.226 4.226 31 H 0.047 0.953 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.053 0.947 35 H 0.114 0.886 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.073 0.927 40 H 0.116 0.884 41 H 0.121 0.879 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.260 0.740 45 H 0.193 0.807 46 H 0.088 0.912 47 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -10.883 14.995 -15.140 23.927 hybrid contribution 0.536 0.852 0.842 1.312 sum -10.346 15.846 -14.298 23.719 Atomic orbital electron populations 1.22473 0.85590 1.03264 1.01421 1.62570 1.09407 1.14831 1.38093 1.22273 0.95179 0.88612 1.01882 1.21576 0.94368 1.00473 0.98178 1.21661 1.01285 0.93318 0.99548 1.21649 0.94659 0.89343 0.91536 0.89729 1.22527 0.93175 0.95730 0.92727 0.93022 1.22592 0.97373 0.93406 1.01572 1.22692 0.84180 0.93156 1.01471 1.47957 1.12538 1.30445 1.40699 1.19421 0.82229 0.84969 0.81622 1.90707 1.44282 1.41891 1.64587 1.20128 0.82992 0.86549 0.83398 1.90627 1.44579 1.41738 1.64178 1.42066 1.15015 1.28008 1.37763 1.17287 0.96395 0.98136 1.04307 1.24243 1.01163 0.96245 1.00551 1.78143 0.92365 1.22709 1.20735 1.44835 1.09021 1.15499 1.23796 1.20646 0.93640 1.18243 1.15926 0.84170 1.26886 0.98977 0.95611 1.00230 1.70373 1.20830 1.19322 1.34256 0.84571 0.77847 0.77382 0.76382 1.19156 1.20022 1.16650 1.21992 1.00701 0.97319 1.02569 0.95325 0.89910 0.90270 0.94709 0.88563 0.89363 0.90813 0.91135 0.92746 0.88413 0.87887 0.90553 0.90724 0.74050 0.80664 0.91214 0.79598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.40 127.69 1.20 1.39 16 2 N -0.52 -7.08 4.96 -893.14 -4.43 -11.51 16 3 C 0.05 0.57 5.36 86.03 0.46 1.03 16 4 C -0.11 -1.47 5.99 30.76 0.18 -1.29 16 5 C -0.12 -2.43 5.03 30.44 0.15 -2.28 16 6 C 0.13 2.78 2.64 45.55 0.12 2.90 16 7 H 0.08 1.84 8.12 -2.39 -0.02 1.82 16 8 C 0.07 1.13 2.12 46.16 0.10 1.23 16 9 H 0.05 0.95 8.09 -2.39 -0.02 0.93 16 10 C -0.11 -1.69 5.76 31.59 0.18 -1.51 16 11 C 0.11 2.43 5.59 86.86 0.49 2.92 16 12 N -0.58 -15.31 3.28 -791.11 -2.60 -17.90 16 13 C 0.53 17.02 7.83 87.22 0.68 17.70 16 14 O -0.54 -17.90 14.69 -3.31 -0.05 -17.95 16 15 C 0.49 18.04 7.83 87.22 0.68 18.72 16 16 O -0.53 -21.70 11.38 -3.43 -0.04 -21.74 16 17 N -0.58 -22.17 5.45 -305.32 -1.66 -23.83 16 18 C -0.06 -2.56 6.90 37.83 0.26 -2.30 16 19 C -0.05 -2.48 10.85 85.44 0.93 -1.56 16 20 N -0.31 -18.30 10.41 -56.43 -0.59 -18.89 16 21 N -0.16 -9.04 3.73 -189.98 -0.71 -9.75 16 22 C -0.35 -18.62 10.24 84.02 0.86 -17.76 16 23 H 0.14 6.43 7.84 -2.91 -0.02 6.40 16 24 C 0.00 -0.25 5.50 84.96 0.47 0.22 16 25 N -0.82 -46.71 11.84 21.66 0.26 -46.46 16 26 Si 1.02 38.26 29.56 68.60 2.03 40.28 16 27 H -0.27 -9.74 7.11 99.48 0.71 -9.03 16 28 H -0.28 -10.18 7.11 99.48 0.71 -9.47 16 29 H -0.24 -8.27 7.11 99.48 0.71 -7.57 16 30 C -0.07 -3.52 11.50 83.41 0.96 -2.56 16 31 H 0.03 0.27 8.14 -2.38 -0.02 0.25 16 32 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.08 0.67 7.44 -2.39 -0.02 0.65 16 34 H 0.03 0.43 8.12 -2.38 -0.02 0.41 16 35 H 0.10 0.83 8.14 -2.38 -0.02 0.82 16 36 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.07 1.72 6.67 -2.39 -0.02 1.71 16 39 H 0.05 1.19 8.13 -2.39 -0.02 1.17 16 40 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 41 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.08 1.85 7.94 -2.38 -0.02 1.84 16 43 H 0.07 1.89 7.40 -2.39 -0.02 1.88 16 44 H 0.42 13.65 8.29 -92.71 -0.77 12.88 16 45 H 0.18 9.14 5.92 -2.91 -0.02 9.12 16 46 H 0.28 14.50 8.31 -92.71 -0.77 13.73 16 47 H 0.19 7.02 8.06 -2.91 -0.02 7.00 16 Total: -1.00 -71.50 376.45 0.17 -71.33 By element: Atomic # 1 Polarization: 39.30 SS G_CDS: 0.23 Total: 39.54 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: 7.72 Total: 16.88 kcal Atomic # 7 Polarization: -118.61 SS G_CDS: -9.73 Total: -128.34 kcal Atomic # 8 Polarization: -39.60 SS G_CDS: -0.09 Total: -39.68 kcal Atomic # 14 Polarization: 38.26 SS G_CDS: 2.03 Total: 40.28 kcal Total: -71.50 0.17 -71.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874366277.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.052 kcal (2) G-P(sol) polarization free energy of solvation -71.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds