Wall clock time and date at job start Wed Apr 1 2020 05:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46136 * 110.99679 * 2 1 4 4 C 1.53245 * 108.65897 * 187.40115 * 3 2 1 5 5 C 1.52585 * 108.35201 * 295.89234 * 4 3 2 6 6 C 1.51940 * 112.88344 * 53.91653 * 5 4 3 7 7 H 1.08998 * 107.70631 * 201.51004 * 6 5 4 8 8 C 1.45544 * 110.99775 * 128.11075 * 2 1 3 9 9 H 1.08994 * 110.38906 * 313.59410 * 8 2 1 10 10 C 1.55908 * 107.73336 * 74.32539 * 8 2 1 11 11 C 1.55047 * 101.22752 * 85.08577 * 10 8 2 12 12 N 1.46608 * 111.88507 * 84.72410 * 6 5 4 13 13 C 1.34771 * 125.93736 * 50.54023 * 12 6 5 14 14 O 1.21367 * 120.00563 * 359.71946 * 13 12 6 15 15 C 1.49314 * 120.00223 * 179.71972 * 13 12 6 16 16 O 1.21408 * 119.99298 * 359.97438 * 15 13 12 17 17 N 1.34771 * 120.00223 * 180.02562 * 15 13 12 18 18 C 1.40295 * 119.99776 * 180.02562 * 17 15 13 19 19 C 1.40727 * 126.10312 * 0.17194 * 18 17 15 20 20 N 1.30876 * 108.37651 * 180.27328 * 19 18 17 21 21 N 1.40063 * 108.43314 * 359.74418 * 20 19 18 22 22 C 1.37297 * 126.05043 * 179.97438 * 21 20 19 23 23 H 1.08007 * 119.99997 * 180.02562 * 22 21 20 24 24 C 1.39004 * 120.00231 * 0.04282 * 22 21 20 25 25 N 1.31280 * 120.00150 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00257 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47520 * 89.99810 * 26 24 22 28 28 H 1.48501 * 109.47123 * 210.00157 * 26 24 22 29 29 H 1.48508 * 109.46820 * 329.99696 * 26 24 22 30 30 C 1.35787 * 126.09761 * 179.97438 * 18 17 15 31 31 H 1.08993 * 109.47383 * 291.88957 * 1 2 3 32 32 H 1.09000 * 109.47061 * 51.88885 * 1 2 3 33 33 H 1.08997 * 109.47184 * 171.88785 * 1 2 3 34 34 H 1.08998 * 109.60720 * 307.15519 * 3 2 1 35 35 H 1.08997 * 109.60551 * 67.65926 * 3 2 1 36 36 H 1.09006 * 109.68954 * 55.60458 * 4 3 2 37 37 H 1.08999 * 109.68840 * 176.17728 * 4 3 2 38 38 H 1.09002 * 108.94215 * 175.11024 * 5 4 3 39 39 H 1.09002 * 108.94121 * 293.81693 * 5 4 3 40 40 H 1.08998 * 111.06924 * 327.09985 * 10 8 2 41 41 H 1.09003 * 111.07430 * 203.07692 * 10 8 2 42 42 H 1.09000 * 110.36387 * 277.94974 * 11 10 8 43 43 H 1.08998 * 110.45642 * 155.68644 * 11 10 8 44 44 H 0.96993 * 120.00073 * 359.97438 * 17 15 13 45 45 H 1.07995 * 125.80851 * 359.97438 * 19 18 17 46 46 H 0.96999 * 120.00346 * 179.97438 * 25 24 22 47 47 H 1.08002 * 126.25482 * 0.02562 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9926 1.3643 0.0000 4 6 3.5125 1.3061 -0.1870 5 6 4.1183 0.5965 1.0203 6 6 3.4965 -0.7656 1.2783 7 1 3.6835 -1.0233 2.3208 8 6 1.9905 -0.8386 1.0691 9 1 1.4689 -0.6310 2.0034 10 6 1.7861 -2.3260 0.6486 11 6 3.0541 -2.5743 -0.2085 12 7 4.1242 -1.8150 0.4695 13 6 5.4474 -2.0495 0.3669 14 8 6.2357 -1.3554 0.9748 15 6 5.9436 -3.1634 -0.4948 16 8 5.1549 -3.8581 -1.1026 17 7 7.2667 -3.3982 -0.5970 18 6 7.7329 -4.4445 -1.4071 19 6 6.9377 -5.3216 -2.1680 20 7 7.7269 -6.1643 -2.7843 21 7 9.0515 -5.8575 -2.4483 22 6 10.1713 -6.5153 -2.8939 23 1 11.1506 -6.1946 -2.5703 24 6 10.0446 -7.5937 -3.7617 25 7 8.8543 -7.9837 -4.1549 26 14 11.5681 -8.4892 -4.3673 27 1 11.8947 -9.5973 -3.4343 28 1 11.3118 -9.0417 -5.7217 29 1 12.7088 -7.5402 -4.4276 30 6 9.0321 -4.7892 -1.5997 31 1 -0.3634 0.3831 0.9535 32 1 -0.3633 0.6343 -0.8086 33 1 -0.3633 -1.0173 -0.1450 34 1 1.5447 1.9280 -0.8183 35 1 1.7593 1.8456 0.9497 36 1 3.7498 0.7526 -1.0956 37 1 3.9128 2.3175 -0.2575 38 1 5.1889 0.4722 0.8572 39 1 3.9648 1.2123 1.9065 40 1 0.8811 -2.4439 0.0528 41 1 1.7676 -2.9806 1.5200 42 1 2.9065 -2.1998 -1.2214 43 1 3.2977 -3.6365 -0.2294 44 1 7.8967 -2.8435 -0.1111 45 1 5.8596 -5.3052 -2.2288 46 1 8.7660 -8.7360 -4.7608 47 1 9.8926 -4.3090 -1.1578 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874366278.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:38 Heat of formation + Delta-G solvation = 42.208697 kcal Electronic energy + Delta-G solvation = -30877.736669 eV Core-core repulsion = 26677.179852 eV Total energy + Delta-G solvation = -4200.556817 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 2.56 seconds Orbital eigenvalues (eV) -41.10547 -39.95880 -39.03963 -37.71980 -36.12491 -34.28112 -33.98400 -33.15892 -31.03152 -30.29785 -29.30170 -28.02388 -26.79092 -25.60517 -24.48368 -23.57443 -22.69900 -21.78251 -21.03577 -20.11885 -19.44378 -18.72929 -17.60854 -17.10921 -16.87749 -16.16337 -15.84630 -15.71096 -15.49687 -15.17349 -14.97656 -14.73824 -14.37193 -13.87402 -13.77886 -13.48417 -13.43434 -13.31016 -13.06644 -12.94781 -12.87701 -12.42579 -12.38139 -11.97013 -11.81338 -11.71487 -11.58367 -11.38658 -11.27956 -11.12758 -11.03394 -10.82166 -10.73676 -10.54611 -10.40703 -10.25054 -9.21390 -8.95371 -8.83899 -8.70371 -8.55105 -8.10960 -6.75291 -6.58994 -4.26045 1.71583 2.50888 2.94417 3.04592 3.09475 3.35434 3.49257 3.71105 3.74393 3.87077 4.14755 4.34682 4.39809 4.61092 4.63311 4.71821 4.75182 4.92454 4.99622 5.04462 5.08418 5.10515 5.14036 5.25090 5.33527 5.39060 5.47385 5.48204 5.63808 5.72076 5.77817 5.89645 5.98920 6.06591 6.09457 6.22108 6.32790 6.38512 6.74790 6.79627 6.87246 6.90584 6.98967 7.18260 7.31912 7.74081 7.85497 8.15205 8.20762 8.52692 8.72369 9.33100 9.61897 10.36852 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.027324 B = 0.002154 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.477124 B =12998.810535 C =13509.871080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.546 5.546 3 C 0.064 3.936 4 C -0.115 4.115 5 C -0.136 4.136 6 C 0.151 3.849 7 H 0.069 0.931 8 C 0.087 3.913 9 H 0.061 0.939 10 C -0.131 4.131 11 C 0.108 3.892 12 N -0.584 5.584 13 C 0.530 3.470 14 O -0.532 6.532 15 C 0.487 3.513 16 O -0.517 6.517 17 N -0.585 5.585 18 C -0.067 4.067 19 C -0.027 4.027 20 N -0.260 5.260 21 N -0.139 5.139 22 C -0.322 4.322 23 H 0.118 0.882 24 C 0.046 3.954 25 N -0.768 5.768 26 Si 0.936 3.064 27 H -0.270 1.270 28 H -0.276 1.276 29 H -0.263 1.263 30 C -0.078 4.078 31 H 0.024 0.976 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.032 0.968 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.065 0.935 40 H 0.091 0.909 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.101 0.899 44 H 0.408 0.592 45 H 0.178 0.822 46 H 0.276 0.724 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.033 15.472 9.696 23.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.271 5.271 3 C -0.063 4.063 4 C -0.152 4.152 5 C -0.175 4.175 6 C 0.047 3.953 7 H 0.087 0.913 8 C -0.023 4.023 9 H 0.079 0.921 10 C -0.169 4.169 11 C -0.014 4.014 12 N -0.318 5.318 13 C 0.314 3.686 14 O -0.409 6.409 15 C 0.268 3.732 16 O -0.395 6.395 17 N -0.227 5.227 18 C -0.173 4.173 19 C -0.202 4.202 20 N -0.091 5.091 21 N 0.094 4.906 22 C -0.454 4.454 23 H 0.135 0.865 24 C -0.171 4.171 25 N -0.394 5.394 26 Si 0.759 3.241 27 H -0.195 1.195 28 H -0.201 1.201 29 H -0.188 1.188 30 C -0.229 4.229 31 H 0.042 0.958 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.050 0.950 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.111 0.889 39 H 0.084 0.916 40 H 0.109 0.891 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.119 0.881 44 H 0.243 0.757 45 H 0.195 0.805 46 H 0.086 0.914 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -13.975 13.947 8.240 21.394 hybrid contribution 0.669 1.052 1.360 1.845 sum -13.307 14.998 9.600 22.230 Atomic orbital electron populations 1.22352 0.86470 1.02666 1.00274 1.60255 1.07481 1.12752 1.46627 1.21947 0.95841 0.88356 1.00202 1.21502 0.94129 1.00523 0.99079 1.21551 1.02972 0.94287 0.98643 1.20835 0.90956 0.88549 0.94951 0.91317 1.21967 0.93264 0.94271 0.92754 0.92126 1.23209 0.99010 0.94231 1.00482 1.22621 0.84356 0.98270 0.96129 1.48207 1.04953 1.31846 1.46819 1.19932 0.81238 0.85016 0.82423 1.90688 1.54456 1.49312 1.46477 1.19556 0.83362 0.85816 0.84432 1.90613 1.54517 1.48564 1.45768 1.42130 1.05971 1.30675 1.43973 1.17247 0.92440 0.99083 1.08534 1.24142 1.00218 0.95929 0.99946 1.78257 0.85518 1.22050 1.23305 1.44555 1.05485 1.16166 1.24379 1.19913 0.84241 1.12872 1.28368 0.86478 1.25660 0.98508 0.96909 0.96053 1.70205 1.22250 1.21870 1.25109 0.85811 0.80138 0.79609 0.78512 1.19548 1.20053 1.18754 1.21303 0.95866 0.99037 1.06717 0.95768 0.91208 0.91015 0.90502 0.95018 0.90879 0.91139 0.88915 0.91593 0.89081 0.90439 0.90324 0.88128 0.75673 0.80548 0.91379 0.83399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.38 60.06 0.56 0.75 16 2 N -0.55 -4.61 4.36 -235.04 -1.02 -5.64 16 3 C 0.06 0.51 5.51 -4.11 -0.02 0.48 16 4 C -0.11 -1.07 6.21 -26.82 -0.17 -1.24 16 5 C -0.14 -1.44 5.47 -27.48 -0.15 -1.59 16 6 C 0.15 1.64 2.81 -68.81 -0.19 1.45 16 7 H 0.07 0.75 8.13 -51.93 -0.42 0.32 16 8 C 0.09 0.76 2.70 -67.29 -0.18 0.57 16 9 H 0.06 0.46 8.02 -51.93 -0.42 0.05 16 10 C -0.13 -1.15 6.54 -24.10 -0.16 -1.31 16 11 C 0.11 1.32 6.00 -2.31 -0.01 1.31 16 12 N -0.58 -7.82 3.19 -165.43 -0.53 -8.35 16 13 C 0.53 8.52 7.66 -11.65 -0.09 8.43 16 14 O -0.53 -9.03 14.81 5.48 0.08 -8.95 16 15 C 0.49 9.04 7.82 -11.65 -0.09 8.95 16 16 O -0.52 -10.41 10.99 5.45 0.06 -10.35 16 17 N -0.58 -11.24 5.45 -10.45 -0.06 -11.30 16 18 C -0.07 -1.56 6.90 -83.92 -0.58 -2.14 16 19 C -0.03 -0.69 10.85 -17.02 -0.18 -0.87 16 20 N -0.26 -7.49 10.39 30.81 0.32 -7.17 16 21 N -0.14 -3.79 3.73 -11.40 -0.04 -3.84 16 22 C -0.32 -8.45 10.25 -14.82 -0.15 -8.60 16 23 H 0.12 2.75 7.83 -52.48 -0.41 2.34 16 24 C 0.05 1.18 5.50 -17.50 -0.10 1.09 16 25 N -0.77 -21.23 11.81 55.50 0.66 -20.58 16 26 Si 0.94 18.77 29.55 -169.99 -5.02 13.75 16 27 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 28 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 29 H -0.26 -5.07 7.11 56.52 0.40 -4.66 16 30 C -0.08 -1.84 11.50 -16.38 -0.19 -2.03 16 31 H 0.02 0.14 8.11 -51.93 -0.42 -0.28 16 32 H 0.07 0.40 8.00 -51.93 -0.42 -0.02 16 33 H 0.07 0.42 6.56 -51.93 -0.34 0.08 16 34 H 0.08 0.54 8.01 -51.93 -0.42 0.13 16 35 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.09 1.22 5.77 -51.93 -0.30 0.92 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.09 0.70 6.45 -51.93 -0.33 0.36 16 41 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.10 1.40 6.28 -51.93 -0.33 1.07 16 44 H 0.41 6.83 8.29 -40.82 -0.34 6.49 16 45 H 0.18 4.43 5.92 -52.49 -0.31 4.11 16 46 H 0.28 6.95 8.31 -40.82 -0.34 6.62 16 47 H 0.15 2.95 8.06 -52.49 -0.42 2.52 16 LS Contribution 373.27 15.07 5.63 5.63 Total: -1.00 -31.97 373.27 -8.18 -40.15 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -6.55 Total: 11.38 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: -1.70 Total: 5.25 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: -0.68 Total: -56.86 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: 0.14 Total: -19.30 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.02 Total: 13.75 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.97 -8.18 -40.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874366278.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.357 kcal (2) G-P(sol) polarization free energy of solvation -31.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.56 seconds