Wall clock time and date at job start Wed Apr 1 2020 05:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46136 * 110.99679 * 2 1 4 4 C 1.53245 * 108.65897 * 187.40115 * 3 2 1 5 5 C 1.52585 * 108.35201 * 295.89234 * 4 3 2 6 6 C 1.51940 * 112.88344 * 53.91653 * 5 4 3 7 7 H 1.08998 * 107.70631 * 201.51004 * 6 5 4 8 8 C 1.45544 * 110.99775 * 128.11075 * 2 1 3 9 9 H 1.08994 * 110.38906 * 313.59410 * 8 2 1 10 10 C 1.55908 * 107.73336 * 74.32539 * 8 2 1 11 11 C 1.55047 * 101.22752 * 85.08577 * 10 8 2 12 12 N 1.46608 * 111.88507 * 84.72410 * 6 5 4 13 13 C 1.34771 * 125.93736 * 50.54023 * 12 6 5 14 14 O 1.21367 * 120.00563 * 359.71946 * 13 12 6 15 15 C 1.49314 * 120.00223 * 179.71972 * 13 12 6 16 16 O 1.21408 * 119.99298 * 359.97438 * 15 13 12 17 17 N 1.34771 * 120.00223 * 180.02562 * 15 13 12 18 18 C 1.40295 * 119.99776 * 180.02562 * 17 15 13 19 19 C 1.40727 * 126.10312 * 0.17194 * 18 17 15 20 20 N 1.30876 * 108.37651 * 180.27328 * 19 18 17 21 21 N 1.40063 * 108.43314 * 359.74418 * 20 19 18 22 22 C 1.37297 * 126.05043 * 179.97438 * 21 20 19 23 23 H 1.08007 * 119.99997 * 180.02562 * 22 21 20 24 24 C 1.39004 * 120.00231 * 0.04282 * 22 21 20 25 25 N 1.31280 * 120.00150 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00257 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47520 * 89.99810 * 26 24 22 28 28 H 1.48501 * 109.47123 * 210.00157 * 26 24 22 29 29 H 1.48508 * 109.46820 * 329.99696 * 26 24 22 30 30 C 1.35787 * 126.09761 * 179.97438 * 18 17 15 31 31 H 1.08993 * 109.47383 * 291.88957 * 1 2 3 32 32 H 1.09000 * 109.47061 * 51.88885 * 1 2 3 33 33 H 1.08997 * 109.47184 * 171.88785 * 1 2 3 34 34 H 1.08998 * 109.60720 * 307.15519 * 3 2 1 35 35 H 1.08997 * 109.60551 * 67.65926 * 3 2 1 36 36 H 1.09006 * 109.68954 * 55.60458 * 4 3 2 37 37 H 1.08999 * 109.68840 * 176.17728 * 4 3 2 38 38 H 1.09002 * 108.94215 * 175.11024 * 5 4 3 39 39 H 1.09002 * 108.94121 * 293.81693 * 5 4 3 40 40 H 1.08998 * 111.06924 * 327.09985 * 10 8 2 41 41 H 1.09003 * 111.07430 * 203.07692 * 10 8 2 42 42 H 1.09000 * 110.36387 * 277.94974 * 11 10 8 43 43 H 1.08998 * 110.45642 * 155.68644 * 11 10 8 44 44 H 0.96993 * 120.00073 * 359.97438 * 17 15 13 45 45 H 1.07995 * 125.80851 * 359.97438 * 19 18 17 46 46 H 0.96999 * 120.00346 * 179.97438 * 25 24 22 47 47 H 1.08002 * 126.25482 * 0.02562 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9926 1.3643 0.0000 4 6 3.5125 1.3061 -0.1870 5 6 4.1183 0.5965 1.0203 6 6 3.4965 -0.7656 1.2783 7 1 3.6835 -1.0233 2.3208 8 6 1.9905 -0.8386 1.0691 9 1 1.4689 -0.6310 2.0034 10 6 1.7861 -2.3260 0.6486 11 6 3.0541 -2.5743 -0.2085 12 7 4.1242 -1.8150 0.4695 13 6 5.4474 -2.0495 0.3669 14 8 6.2357 -1.3554 0.9748 15 6 5.9436 -3.1634 -0.4948 16 8 5.1549 -3.8581 -1.1026 17 7 7.2667 -3.3982 -0.5970 18 6 7.7329 -4.4445 -1.4071 19 6 6.9377 -5.3216 -2.1680 20 7 7.7269 -6.1643 -2.7843 21 7 9.0515 -5.8575 -2.4483 22 6 10.1713 -6.5153 -2.8939 23 1 11.1506 -6.1946 -2.5703 24 6 10.0446 -7.5937 -3.7617 25 7 8.8543 -7.9837 -4.1549 26 14 11.5681 -8.4892 -4.3673 27 1 11.8947 -9.5973 -3.4343 28 1 11.3118 -9.0417 -5.7217 29 1 12.7088 -7.5402 -4.4276 30 6 9.0321 -4.7892 -1.5997 31 1 -0.3634 0.3831 0.9535 32 1 -0.3633 0.6343 -0.8086 33 1 -0.3633 -1.0173 -0.1450 34 1 1.5447 1.9280 -0.8183 35 1 1.7593 1.8456 0.9497 36 1 3.7498 0.7526 -1.0956 37 1 3.9128 2.3175 -0.2575 38 1 5.1889 0.4722 0.8572 39 1 3.9648 1.2123 1.9065 40 1 0.8811 -2.4439 0.0528 41 1 1.7676 -2.9806 1.5200 42 1 2.9065 -2.1998 -1.2214 43 1 3.2977 -3.6365 -0.2294 44 1 7.8967 -2.8435 -0.1111 45 1 5.8596 -5.3052 -2.2288 46 1 8.7660 -8.7360 -4.7608 47 1 9.8926 -4.3090 -1.1578 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874366278.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:36 Heat of formation + Delta-G solvation = 19.525522 kcal Electronic energy + Delta-G solvation = -30878.720285 eV Core-core repulsion = 26677.179852 eV Total energy + Delta-G solvation = -4201.540433 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.27453 -41.58958 -40.43323 -39.11144 -37.09498 -35.96251 -34.99311 -34.72468 -32.30427 -31.97798 -30.13435 -29.86386 -27.42209 -27.26184 -25.97935 -24.33906 -23.82129 -22.90414 -22.61842 -21.48856 -21.15071 -19.80800 -19.36888 -18.47025 -17.87419 -17.44899 -17.38859 -16.77544 -16.74585 -16.55461 -15.99664 -15.90031 -15.65594 -15.43354 -15.20310 -14.87049 -14.63398 -14.47767 -14.33984 -14.06479 -13.72474 -13.50681 -13.35740 -13.15203 -13.08818 -12.94810 -12.90597 -12.67304 -12.57208 -12.31466 -12.14989 -12.08366 -11.96406 -11.81368 -11.50213 -11.23827 -11.06550 -10.87058 -10.36665 -10.13994 -9.81393 -9.13077 -8.61837 -8.48854 -6.26443 0.28999 1.21128 1.29405 1.41394 1.58526 1.72235 2.03646 2.10968 2.45949 2.53289 2.84397 2.89330 3.07588 3.30603 3.52365 3.53841 3.86935 3.97146 4.03639 4.19547 4.34465 4.39313 4.41446 4.51710 4.52925 4.61047 4.64708 4.76983 4.79675 4.83525 4.88380 4.95044 4.96857 4.98100 5.03549 5.07442 5.15169 5.21132 5.23791 5.31494 5.31945 5.41103 5.91307 6.07581 6.18879 6.22797 6.26261 6.38763 6.66240 6.76210 7.08071 7.41216 7.62864 8.50420 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.027324 B = 0.002154 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.477124 B =12998.810535 C =13509.871080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.564 5.564 3 C 0.068 3.932 4 C -0.112 4.112 5 C -0.134 4.134 6 C 0.143 3.857 7 H 0.074 0.926 8 C 0.094 3.906 9 H 0.084 0.916 10 C -0.119 4.119 11 C 0.105 3.895 12 N -0.577 5.577 13 C 0.533 3.467 14 O -0.542 6.542 15 C 0.487 3.513 16 O -0.534 6.534 17 N -0.584 5.584 18 C -0.055 4.055 19 C -0.047 4.047 20 N -0.307 5.307 21 N -0.163 5.163 22 C -0.353 4.353 23 H 0.141 0.859 24 C -0.005 4.005 25 N -0.821 5.821 26 Si 1.020 2.980 27 H -0.264 1.264 28 H -0.276 1.276 29 H -0.245 1.245 30 C -0.076 4.076 31 H 0.035 0.965 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.045 0.955 36 H 0.045 0.955 37 H 0.083 0.917 38 H 0.064 0.936 39 H 0.086 0.914 40 H 0.107 0.893 41 H 0.089 0.911 42 H 0.067 0.933 43 H 0.080 0.920 44 H 0.422 0.578 45 H 0.176 0.824 46 H 0.278 0.722 47 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.417 17.094 11.148 24.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.289 5.289 3 C -0.059 4.059 4 C -0.150 4.150 5 C -0.172 4.172 6 C 0.040 3.960 7 H 0.092 0.908 8 C -0.015 4.015 9 H 0.102 0.898 10 C -0.157 4.157 11 C -0.017 4.017 12 N -0.310 5.310 13 C 0.316 3.684 14 O -0.421 6.421 15 C 0.269 3.731 16 O -0.411 6.411 17 N -0.229 5.229 18 C -0.161 4.161 19 C -0.223 4.223 20 N -0.139 5.139 21 N 0.069 4.931 22 C -0.484 4.484 23 H 0.159 0.841 24 C -0.217 4.217 25 N -0.448 5.448 26 Si 0.838 3.162 27 H -0.189 1.189 28 H -0.201 1.201 29 H -0.168 1.168 30 C -0.227 4.227 31 H 0.053 0.947 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.101 0.899 38 H 0.082 0.918 39 H 0.104 0.896 40 H 0.125 0.875 41 H 0.108 0.892 42 H 0.085 0.915 43 H 0.098 0.902 44 H 0.259 0.741 45 H 0.193 0.807 46 H 0.088 0.912 47 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -14.398 15.617 9.726 23.362 hybrid contribution 0.648 0.681 0.980 1.358 sum -13.750 16.298 10.706 23.860 Atomic orbital electron populations 1.22388 0.84925 1.03214 1.01087 1.60247 1.08885 1.13052 1.46749 1.21923 0.94357 0.88357 1.01260 1.21473 0.95673 1.00591 0.97229 1.21517 1.01157 0.94550 1.00022 1.21152 0.92439 0.87837 0.94545 0.90830 1.21935 0.91567 0.94066 0.93941 0.89811 1.23191 0.97411 0.94743 1.00374 1.22641 0.85774 0.96812 0.96464 1.48318 1.04167 1.32261 1.46219 1.19340 0.82332 0.84379 0.82386 1.90688 1.54976 1.49413 1.46989 1.20173 0.82926 0.85995 0.83987 1.90611 1.54981 1.49271 1.46267 1.42068 1.06705 1.30169 1.43949 1.17286 0.92053 0.99038 1.07698 1.24237 1.00290 0.96796 1.00935 1.78154 0.86895 1.23778 1.25048 1.44836 1.05202 1.17461 1.25607 1.20649 0.84943 1.13646 1.29162 0.84148 1.26887 1.02005 0.97306 0.95547 1.70374 1.25192 1.22892 1.26389 0.84583 0.75821 0.78213 0.77539 1.18851 1.20078 1.16823 1.21984 0.97260 0.97969 1.05501 0.94688 0.90677 0.90592 0.89574 0.93687 0.93617 0.89890 0.91763 0.89584 0.87502 0.89238 0.91507 0.90169 0.74096 0.80738 0.91226 0.79611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.38 127.69 1.20 1.49 16 2 N -0.56 -8.05 4.36 -897.54 -3.91 -11.96 16 3 C 0.07 0.90 5.51 86.53 0.48 1.38 16 4 C -0.11 -1.94 6.21 30.54 0.19 -1.75 16 5 C -0.13 -2.63 5.47 30.11 0.16 -2.47 16 6 C 0.14 2.86 2.81 44.36 0.12 2.98 16 7 H 0.07 1.43 8.13 -2.39 -0.02 1.41 16 8 C 0.09 1.38 2.70 45.92 0.12 1.50 16 9 H 0.08 0.92 8.02 -2.39 -0.02 0.90 16 10 C -0.12 -1.84 6.54 32.30 0.21 -1.63 16 11 C 0.10 2.54 6.00 86.85 0.52 3.06 16 12 N -0.58 -15.20 3.19 -795.67 -2.54 -17.74 16 13 C 0.53 17.16 7.66 87.23 0.67 17.83 16 14 O -0.54 -18.24 14.81 -3.30 -0.05 -18.29 16 15 C 0.49 18.37 7.82 87.23 0.68 19.06 16 16 O -0.53 -22.20 10.99 -3.43 -0.04 -22.24 16 17 N -0.58 -22.53 5.45 -305.32 -1.66 -24.19 16 18 C -0.05 -2.57 6.90 37.83 0.26 -2.31 16 19 C -0.05 -2.55 10.85 85.44 0.93 -1.62 16 20 N -0.31 -18.38 10.39 -56.43 -0.59 -18.97 16 21 N -0.16 -9.08 3.73 -189.97 -0.71 -9.79 16 22 C -0.35 -18.67 10.25 84.02 0.86 -17.81 16 23 H 0.14 6.46 7.83 -2.91 -0.02 6.43 16 24 C -0.01 -0.28 5.50 84.96 0.47 0.19 16 25 N -0.82 -46.98 11.81 21.66 0.26 -46.73 16 26 Si 1.02 38.40 29.55 68.60 2.03 40.43 16 27 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 28 H -0.28 -10.26 7.11 99.48 0.71 -9.56 16 29 H -0.25 -8.41 7.11 99.48 0.71 -7.70 16 30 C -0.08 -3.61 11.50 83.41 0.96 -2.65 16 31 H 0.03 0.27 8.11 -2.39 -0.02 0.25 16 32 H 0.07 0.65 8.00 -2.39 -0.02 0.63 16 33 H 0.08 0.66 6.56 -2.39 -0.02 0.64 16 34 H 0.09 0.99 8.01 -2.39 -0.02 0.97 16 35 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.06 1.66 5.77 -2.39 -0.01 1.65 16 39 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.11 1.36 6.45 -2.39 -0.02 1.34 16 41 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.08 2.29 6.28 -2.39 -0.02 2.27 16 44 H 0.42 13.88 8.29 -92.71 -0.77 13.11 16 45 H 0.18 9.23 5.92 -2.91 -0.02 9.22 16 46 H 0.28 14.58 8.31 -92.71 -0.77 13.81 16 47 H 0.19 7.08 8.06 -2.91 -0.02 7.06 16 Total: -1.00 -72.56 373.27 0.87 -71.69 By element: Atomic # 1 Polarization: 40.28 SS G_CDS: 0.25 Total: 40.53 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: 7.84 Total: 17.26 kcal Atomic # 7 Polarization: -120.23 SS G_CDS: -9.15 Total: -129.38 kcal Atomic # 8 Polarization: -40.44 SS G_CDS: -0.09 Total: -40.53 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 2.03 Total: 40.43 kcal Total: -72.56 0.87 -71.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874366278.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.218 kcal (2) G-P(sol) polarization free energy of solvation -72.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds