Wall clock time and date at job start Wed Apr 1 2020 06:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 119.99709 * 2 1 4 4 C 1.50702 * 109.46891 * 269.99449 * 3 2 1 5 5 H 1.08004 * 120.00259 * 359.97438 * 4 3 2 6 6 C 1.37885 * 120.00279 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99591 * 0.02562 * 6 4 3 8 8 Si 1.86791 * 120.00060 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47360 * 89.99961 * 8 6 4 10 10 H 1.48507 * 109.46969 * 209.99883 * 8 6 4 11 11 H 1.48506 * 109.47236 * 329.99814 * 8 6 4 12 12 C 1.34767 * 120.00095 * 179.97438 * 2 1 3 13 13 O 1.21593 * 119.99946 * 180.02562 * 12 2 1 14 14 N 1.34771 * 120.00260 * 359.97438 * 12 2 1 15 15 C 1.40276 * 120.00410 * 185.28182 * 14 12 2 16 16 C 1.39156 * 120.78812 * 212.41681 * 15 14 12 17 17 N 1.32265 * 119.11529 * 180.02562 * 16 15 14 18 18 C 1.32446 * 120.80833 * 359.97438 * 17 16 15 19 19 N 1.38634 * 119.13403 * 180.02562 * 18 17 16 20 20 C 1.47053 * 111.00104 * 180.02562 * 19 18 17 21 21 C 1.53668 * 108.88344 * 181.79309 * 20 19 18 22 22 H 1.09003 * 112.07050 * 186.35971 * 21 20 19 23 23 C 1.54714 * 108.38204 * 310.66437 * 21 20 19 24 24 C 1.54553 * 103.82043 * 88.56290 * 23 21 20 25 25 C 1.54716 * 103.81929 * 0.02562 * 24 23 21 26 26 H 1.08999 * 112.64950 * 147.46585 * 25 24 23 27 27 C 1.47059 * 111.00066 * 55.74372 * 19 18 17 28 28 O 1.44642 * 104.34310 * 25.53292 * 25 24 23 29 29 N 1.32430 * 121.72549 * 0.28335 * 18 17 16 30 30 C 1.32274 * 120.80865 * 359.43443 * 29 18 17 31 31 H 1.08997 * 109.47720 * 270.00788 * 1 2 3 32 32 H 1.09009 * 109.47268 * 30.00626 * 1 2 3 33 33 H 1.08993 * 109.47086 * 150.00145 * 1 2 3 34 34 H 1.09003 * 109.47888 * 29.99399 * 3 2 1 35 35 H 1.08998 * 109.47568 * 150.00088 * 3 2 1 36 36 H 0.96996 * 119.99816 * 180.02562 * 7 6 4 37 37 H 0.97009 * 119.99685 * 5.28182 * 14 12 2 38 38 H 1.08003 * 120.43852 * 359.97438 * 16 15 14 39 39 H 1.08999 * 109.56757 * 61.97187 * 20 19 18 40 40 H 1.08997 * 109.66415 * 301.67487 * 20 19 18 41 41 H 1.09003 * 110.55692 * 207.14599 * 23 21 20 42 42 H 1.08994 * 110.55698 * 329.97770 * 23 21 20 43 43 H 1.09007 * 110.55624 * 241.41682 * 24 23 21 44 44 H 1.09003 * 110.68096 * 118.64628 * 24 23 21 45 45 H 1.09004 * 109.56590 * 298.02190 * 27 19 18 46 46 H 1.09000 * 109.56996 * 58.26332 * 27 19 18 47 47 H 1.08006 * 120.44262 * 180.25300 * 30 29 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4209 5 1 2.0982 1.0956 -2.2418 6 6 3.1269 2.8774 -1.6729 7 7 3.5550 3.6172 -0.6733 8 14 3.4376 3.4168 -3.4341 9 1 2.3078 4.2604 -3.9001 10 1 4.6983 4.1992 -3.4970 11 1 3.5539 2.2198 -4.3052 12 6 2.1388 -1.1671 0.0005 13 8 3.3548 -1.1671 0.0010 14 7 1.4650 -2.3343 0.0016 15 6 2.1620 -3.5465 0.1139 16 6 1.6946 -4.6976 -0.5129 17 7 2.3777 -5.8229 -0.3845 18 6 3.4929 -5.8618 0.3290 19 7 4.1816 -7.0598 0.4400 20 6 5.3863 -6.9003 1.2682 21 6 6.1342 -8.2416 1.3216 22 1 6.9771 -8.2134 2.0122 23 6 5.1196 -9.3519 1.6844 24 6 4.5659 -9.8077 0.3153 25 6 5.3162 -8.9158 -0.7022 26 1 5.4983 -9.4223 -1.6501 27 6 4.5143 -7.6014 -0.8861 28 8 6.5456 -8.5598 -0.0285 29 7 3.9645 -4.7875 0.9432 30 6 3.3372 -3.6263 0.8545 31 1 -0.3634 0.0001 1.0276 32 1 -0.3634 0.8900 -0.5140 33 1 -0.3633 -0.8899 -0.5138 34 1 1.6083 2.0285 0.5137 35 1 3.1498 1.1386 0.5138 36 1 4.0317 4.4430 -0.8506 37 1 0.4980 -2.3361 -0.0754 38 1 0.7857 -4.6726 -1.0958 39 1 5.0993 -6.6019 2.2764 40 1 6.0329 -6.1388 0.8322 41 1 5.6205 -10.1781 2.1889 42 1 4.3196 -8.9508 2.3065 43 1 3.4915 -9.6323 0.2594 44 1 4.7905 -10.8598 0.1402 45 1 3.5964 -7.8101 -1.4359 46 1 5.1130 -6.8760 -1.4370 47 1 3.7293 -2.7530 1.3546 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881078181.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:07:23 Heat of formation + Delta-G solvation = 21.611944 kcal Electronic energy + Delta-G solvation = -30525.635231 eV Core-core repulsion = 26324.185272 eV Total energy + Delta-G solvation = -4201.449959 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.67558 -40.69759 -39.51079 -36.42816 -35.10738 -34.49090 -33.75489 -32.64060 -32.22842 -31.71597 -29.70007 -27.81102 -26.43354 -25.66910 -25.59721 -24.12858 -23.41643 -22.29218 -21.36129 -20.04096 -19.86444 -18.38532 -18.24646 -17.22859 -16.81751 -16.56000 -16.32497 -16.08423 -15.31415 -15.02565 -15.00764 -14.87251 -14.58626 -14.24674 -14.15196 -14.07849 -13.56891 -13.26300 -13.12211 -12.98917 -12.81349 -12.28009 -12.02519 -11.96126 -11.90280 -11.68070 -11.40423 -11.26488 -11.26224 -11.06962 -10.84567 -10.84261 -10.72271 -10.64451 -10.22178 -9.98273 -9.74518 -9.68663 -9.55309 -8.87743 -8.49466 -8.07137 -7.70127 -6.10593 -4.15594 0.93354 1.11503 2.81193 3.09970 3.26188 3.33614 3.38035 3.53794 3.58260 3.86490 4.08145 4.25782 4.41386 4.42051 4.42674 4.45977 4.55194 4.62238 4.62709 4.83188 4.98075 5.08819 5.13869 5.23912 5.28710 5.34484 5.35867 5.49516 5.56056 5.63854 5.67755 5.73849 5.79742 5.83183 5.90684 5.96097 6.02126 6.34477 6.52907 6.58687 6.60035 6.67531 7.18623 7.21719 7.36004 7.50813 7.85992 8.11910 8.14533 8.38626 8.83508 9.04051 9.49796 10.97375 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018740 B = 0.002198 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.766380 B =12733.712720 C =13300.427973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.608 5.608 3 C 0.259 3.741 4 C -0.529 4.529 5 H 0.057 0.943 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.696 3.304 13 O -0.568 6.568 14 N -0.684 5.684 15 C 0.058 3.942 16 C 0.136 3.864 17 N -0.509 5.509 18 C 0.455 3.545 19 N -0.452 5.452 20 C 0.045 3.955 21 C 0.070 3.930 22 H 0.121 0.879 23 C -0.138 4.138 24 C -0.137 4.137 25 C 0.073 3.927 26 H 0.122 0.878 27 C 0.040 3.960 28 O -0.369 6.369 29 N -0.527 5.527 30 C 0.173 3.827 31 H 0.048 0.952 32 H 0.080 0.920 33 H 0.050 0.950 34 H 0.037 0.963 35 H 0.047 0.953 36 H 0.264 0.736 37 H 0.405 0.595 38 H 0.170 0.830 39 H 0.096 0.904 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.070 0.930 45 H 0.101 0.899 46 H 0.053 0.947 47 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.255 -24.437 4.187 25.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.342 5.342 3 C 0.140 3.860 4 C -0.568 4.568 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.532 5.532 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.398 3.602 13 O -0.444 6.444 14 N -0.336 5.336 15 C -0.045 4.045 16 C -0.035 4.035 17 N -0.226 5.226 18 C 0.098 3.902 19 N -0.173 5.173 20 C -0.083 4.083 21 C 0.012 3.988 22 H 0.139 0.861 23 C -0.176 4.176 24 C -0.175 4.175 25 C 0.015 3.985 26 H 0.139 0.861 27 C -0.087 4.087 28 O -0.288 6.288 29 N -0.246 5.246 30 C 0.003 3.997 31 H 0.066 0.934 32 H 0.099 0.901 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.243 0.757 38 H 0.187 0.813 39 H 0.114 0.886 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.102 0.898 43 H 0.104 0.896 44 H 0.088 0.912 45 H 0.120 0.880 46 H 0.071 0.929 47 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -2.848 -25.347 4.468 25.895 hybrid contribution -0.753 1.919 -1.422 2.504 sum -3.601 -23.429 3.046 23.899 Atomic orbital electron populations 1.21628 0.81415 1.02510 1.00626 1.47525 1.05898 1.06228 1.74580 1.19304 0.92426 0.76660 0.97639 1.21425 1.36789 1.06348 0.92261 0.92500 1.24928 0.95249 0.96374 0.97500 1.69922 1.38213 1.14344 1.30750 0.86488 0.77735 0.78587 0.84554 1.20606 1.21019 1.19948 1.15941 0.85572 0.80045 0.78649 1.90918 1.11281 1.85420 1.56818 1.42851 1.09993 1.02971 1.77738 1.19218 0.97776 0.87724 0.99756 1.22824 0.99420 0.86552 0.94656 1.67849 1.07133 1.27936 1.19678 1.20895 0.89854 0.88098 0.91357 1.58701 1.23297 1.20130 1.15184 1.22747 0.89320 0.97234 0.98974 1.23572 0.96842 0.93291 0.85124 0.86116 1.22848 0.98867 0.97909 0.97946 1.22824 1.01479 0.99075 0.94076 1.23788 0.83953 0.93331 0.97444 0.86060 1.23170 1.01163 0.96552 0.87777 1.89298 1.28873 1.87777 1.22841 1.68376 1.32908 0.98699 1.24613 1.23338 0.90234 0.94729 0.91426 0.93369 0.90087 0.93121 0.94545 0.93537 0.92616 0.75710 0.81287 0.88566 0.91603 0.91188 0.89834 0.89613 0.91151 0.88047 0.92880 0.80037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.15 10.25 59.85 0.61 1.77 16 2 N -0.61 -12.06 2.86 -188.74 -0.54 -12.60 16 3 C 0.26 6.48 5.16 -5.19 -0.03 6.45 16 4 C -0.53 -14.61 9.39 -34.44 -0.32 -14.93 16 5 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 7 N -0.89 -26.03 13.29 55.43 0.74 -25.29 16 8 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 12 C 0.70 13.77 8.05 -86.93 -0.70 13.07 16 13 O -0.57 -13.70 13.62 5.28 0.07 -13.63 16 14 N -0.68 -9.91 5.26 -14.01 -0.07 -9.98 16 15 C 0.06 0.84 6.34 -83.32 -0.53 0.32 16 16 C 0.14 1.70 11.25 -17.02 -0.19 1.51 16 17 N -0.51 -6.99 9.79 -13.76 -0.13 -7.13 16 18 C 0.45 6.56 7.19 -322.62 -2.32 4.24 16 19 N -0.45 -5.47 3.86 -173.39 -0.67 -6.13 16 20 C 0.04 0.50 4.25 -3.39 -0.01 0.49 16 21 C 0.07 0.64 4.68 -25.48 -0.12 0.52 16 22 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 23 C -0.14 -1.08 6.25 -25.01 -0.16 -1.24 16 24 C -0.14 -1.05 6.26 -25.01 -0.16 -1.21 16 25 C 0.07 0.65 4.76 -24.73 -0.12 0.53 16 26 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 27 C 0.04 0.44 4.95 -2.64 -0.01 0.42 16 28 O -0.37 -4.07 11.24 -35.23 -0.40 -4.46 16 29 N -0.53 -8.28 8.70 -13.76 -0.12 -8.40 16 30 C 0.17 2.82 9.93 -17.03 -0.17 2.65 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 1.18 8.07 -51.92 -0.42 0.76 16 33 H 0.05 0.54 6.29 -51.93 -0.33 0.21 16 34 H 0.04 0.91 8.07 -51.93 -0.42 0.50 16 35 H 0.05 1.32 7.42 -51.93 -0.39 0.93 16 36 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.41 4.36 6.52 -40.82 -0.27 4.09 16 38 H 0.17 1.50 8.06 -52.48 -0.42 1.07 16 39 H 0.10 1.06 7.99 -51.93 -0.42 0.65 16 40 H 0.07 0.87 7.87 -51.93 -0.41 0.46 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.08 0.69 7.84 -51.93 -0.41 0.28 16 43 H 0.09 0.69 7.87 -51.93 -0.41 0.28 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.10 1.04 7.80 -51.93 -0.40 0.64 16 46 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.18 3.23 6.46 -52.48 -0.34 2.89 16 LS Contribution 378.87 15.07 5.71 5.71 Total: -1.00 -34.17 378.87 -11.46 -45.63 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -6.70 Total: 3.46 kcal Atomic # 6 Polarization: 20.56 SS G_CDS: -4.32 Total: 16.24 kcal Atomic # 7 Polarization: -68.73 SS G_CDS: -0.80 Total: -69.53 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -0.32 Total: -18.09 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.17 -11.46 -45.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881078181.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.238 kcal (2) G-P(sol) polarization free energy of solvation -34.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds