Wall clock time and date at job start Wed Apr 1 2020 06:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 119.99709 * 2 1 4 4 C 1.50702 * 109.46891 * 269.99449 * 3 2 1 5 5 H 1.08004 * 120.00259 * 359.97438 * 4 3 2 6 6 C 1.37885 * 120.00279 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99591 * 0.02562 * 6 4 3 8 8 Si 1.86791 * 120.00060 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47360 * 89.99961 * 8 6 4 10 10 H 1.48507 * 109.46969 * 209.99883 * 8 6 4 11 11 H 1.48506 * 109.47236 * 329.99814 * 8 6 4 12 12 C 1.34767 * 120.00095 * 179.97438 * 2 1 3 13 13 O 1.21593 * 119.99946 * 180.02562 * 12 2 1 14 14 N 1.34771 * 120.00260 * 359.97438 * 12 2 1 15 15 C 1.40276 * 120.00410 * 185.28182 * 14 12 2 16 16 C 1.39156 * 120.78812 * 212.41681 * 15 14 12 17 17 N 1.32265 * 119.11529 * 180.02562 * 16 15 14 18 18 C 1.32446 * 120.80833 * 359.97438 * 17 16 15 19 19 N 1.38634 * 119.13403 * 180.02562 * 18 17 16 20 20 C 1.47053 * 111.00104 * 180.02562 * 19 18 17 21 21 C 1.53668 * 108.88344 * 181.79309 * 20 19 18 22 22 H 1.09003 * 112.07050 * 186.35971 * 21 20 19 23 23 C 1.54714 * 108.38204 * 310.66437 * 21 20 19 24 24 C 1.54553 * 103.82043 * 88.56290 * 23 21 20 25 25 C 1.54716 * 103.81929 * 0.02562 * 24 23 21 26 26 H 1.08999 * 112.64950 * 147.46585 * 25 24 23 27 27 C 1.47059 * 111.00066 * 55.74372 * 19 18 17 28 28 O 1.44642 * 104.34310 * 25.53292 * 25 24 23 29 29 N 1.32430 * 121.72549 * 0.28335 * 18 17 16 30 30 C 1.32274 * 120.80865 * 359.43443 * 29 18 17 31 31 H 1.08997 * 109.47720 * 270.00788 * 1 2 3 32 32 H 1.09009 * 109.47268 * 30.00626 * 1 2 3 33 33 H 1.08993 * 109.47086 * 150.00145 * 1 2 3 34 34 H 1.09003 * 109.47888 * 29.99399 * 3 2 1 35 35 H 1.08998 * 109.47568 * 150.00088 * 3 2 1 36 36 H 0.96996 * 119.99816 * 180.02562 * 7 6 4 37 37 H 0.97009 * 119.99685 * 5.28182 * 14 12 2 38 38 H 1.08003 * 120.43852 * 359.97438 * 16 15 14 39 39 H 1.08999 * 109.56757 * 61.97187 * 20 19 18 40 40 H 1.08997 * 109.66415 * 301.67487 * 20 19 18 41 41 H 1.09003 * 110.55692 * 207.14599 * 23 21 20 42 42 H 1.08994 * 110.55698 * 329.97770 * 23 21 20 43 43 H 1.09007 * 110.55624 * 241.41682 * 24 23 21 44 44 H 1.09003 * 110.68096 * 118.64628 * 24 23 21 45 45 H 1.09004 * 109.56590 * 298.02190 * 27 19 18 46 46 H 1.09000 * 109.56996 * 58.26332 * 27 19 18 47 47 H 1.08006 * 120.44262 * 180.25300 * 30 29 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4209 5 1 2.0982 1.0956 -2.2418 6 6 3.1269 2.8774 -1.6729 7 7 3.5550 3.6172 -0.6733 8 14 3.4376 3.4168 -3.4341 9 1 2.3078 4.2604 -3.9001 10 1 4.6983 4.1992 -3.4970 11 1 3.5539 2.2198 -4.3052 12 6 2.1388 -1.1671 0.0005 13 8 3.3548 -1.1671 0.0010 14 7 1.4650 -2.3343 0.0016 15 6 2.1620 -3.5465 0.1139 16 6 1.6946 -4.6976 -0.5129 17 7 2.3777 -5.8229 -0.3845 18 6 3.4929 -5.8618 0.3290 19 7 4.1816 -7.0598 0.4400 20 6 5.3863 -6.9003 1.2682 21 6 6.1342 -8.2416 1.3216 22 1 6.9771 -8.2134 2.0122 23 6 5.1196 -9.3519 1.6844 24 6 4.5659 -9.8077 0.3153 25 6 5.3162 -8.9158 -0.7022 26 1 5.4983 -9.4223 -1.6501 27 6 4.5143 -7.6014 -0.8861 28 8 6.5456 -8.5598 -0.0285 29 7 3.9645 -4.7875 0.9432 30 6 3.3372 -3.6263 0.8545 31 1 -0.3634 0.0001 1.0276 32 1 -0.3634 0.8900 -0.5140 33 1 -0.3633 -0.8899 -0.5138 34 1 1.6083 2.0285 0.5137 35 1 3.1498 1.1386 0.5138 36 1 4.0317 4.4430 -0.8506 37 1 0.4980 -2.3361 -0.0754 38 1 0.7857 -4.6726 -1.0958 39 1 5.0993 -6.6019 2.2764 40 1 6.0329 -6.1388 0.8322 41 1 5.6205 -10.1781 2.1889 42 1 4.3196 -8.9508 2.3065 43 1 3.4915 -9.6323 0.2594 44 1 4.7905 -10.8598 0.1402 45 1 3.5964 -7.8101 -1.4359 46 1 5.1130 -6.8760 -1.4370 47 1 3.7293 -2.7530 1.3546 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881078181.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:07:19 Heat of formation + Delta-G solvation = -1.236833 kcal Electronic energy + Delta-G solvation = -30526.626029 eV Core-core repulsion = 26324.185272 eV Total energy + Delta-G solvation = -4202.440757 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -42.72588 -41.73132 -40.85393 -37.54802 -36.67572 -35.82796 -34.90461 -34.64051 -32.95643 -32.51031 -30.97632 -29.51793 -27.58468 -26.98445 -26.56508 -25.20119 -24.99129 -23.64107 -22.04992 -21.29791 -20.85241 -19.62826 -19.30641 -18.68725 -18.48952 -18.11272 -17.23735 -17.01879 -16.77279 -16.45833 -16.11019 -15.90497 -15.82574 -15.49177 -15.21815 -15.13987 -14.84791 -14.66917 -14.42067 -13.94664 -13.85566 -13.71626 -13.50101 -13.19542 -12.87449 -12.84902 -12.72766 -12.59277 -12.51830 -12.30996 -12.21732 -12.05208 -11.98751 -11.89970 -11.72483 -11.40118 -11.22232 -10.88484 -10.70646 -10.64087 -10.03688 -9.58638 -9.01561 -8.22777 -6.37049 -0.21541 -0.03304 1.35719 1.38847 1.46949 1.53031 1.95428 2.14387 2.37508 2.66909 2.86843 2.95473 3.01575 3.07489 3.46108 3.56612 3.67963 3.75617 3.76966 3.79507 3.86430 4.00802 4.28312 4.35339 4.39664 4.47503 4.57869 4.59490 4.66226 4.71266 4.74752 4.83241 4.86346 4.96536 4.99923 5.07045 5.17820 5.20419 5.28387 5.38750 5.44233 5.51277 5.58125 5.72968 5.79198 5.96757 6.04320 6.07125 6.71550 6.95228 6.99181 7.29311 7.52994 8.83696 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018740 B = 0.002198 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.766380 B =12733.712720 C =13300.427973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.615 5.615 3 C 0.274 3.726 4 C -0.542 4.542 5 H 0.053 0.947 6 C 0.008 3.992 7 N -0.927 5.927 8 Si 0.965 3.035 9 H -0.262 1.262 10 H -0.283 1.283 11 H -0.276 1.276 12 C 0.694 3.306 13 O -0.622 6.622 14 N -0.658 5.658 15 C 0.045 3.955 16 C 0.160 3.840 17 N -0.510 5.510 18 C 0.448 3.552 19 N -0.446 5.446 20 C 0.046 3.954 21 C 0.070 3.930 22 H 0.138 0.862 23 C -0.134 4.134 24 C -0.132 4.132 25 C 0.074 3.926 26 H 0.144 0.856 27 C 0.040 3.960 28 O -0.389 6.389 29 N -0.546 5.546 30 C 0.153 3.847 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.033 0.967 35 H 0.001 0.999 36 H 0.267 0.733 37 H 0.427 0.573 38 H 0.217 0.783 39 H 0.094 0.906 40 H 0.038 0.962 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.090 0.910 45 H 0.109 0.891 46 H 0.030 0.970 47 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.323 -26.906 2.831 27.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.349 5.349 3 C 0.153 3.847 4 C -0.580 4.580 5 H 0.071 0.929 6 C -0.191 4.191 7 N -0.567 5.567 8 Si 0.790 3.210 9 H -0.186 1.186 10 H -0.209 1.209 11 H -0.201 1.201 12 C 0.395 3.605 13 O -0.502 6.502 14 N -0.311 5.311 15 C -0.057 4.057 16 C -0.011 4.011 17 N -0.227 5.227 18 C 0.092 3.908 19 N -0.166 5.166 20 C -0.081 4.081 21 C 0.013 3.987 22 H 0.156 0.844 23 C -0.172 4.172 24 C -0.170 4.170 25 C 0.016 3.984 26 H 0.162 0.838 27 C -0.086 4.086 28 O -0.308 6.308 29 N -0.265 5.265 30 C -0.016 4.016 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.110 0.890 34 H 0.050 0.950 35 H 0.020 0.980 36 H 0.076 0.924 37 H 0.269 0.731 38 H 0.233 0.767 39 H 0.112 0.888 40 H 0.057 0.943 41 H 0.107 0.893 42 H 0.096 0.904 43 H 0.101 0.899 44 H 0.108 0.892 45 H 0.128 0.872 46 H 0.049 0.951 47 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -4.989 -27.863 3.123 28.478 hybrid contribution -0.118 2.601 -0.957 2.775 sum -5.107 -25.262 2.166 25.864 Atomic orbital electron populations 1.21963 0.77539 1.04262 1.02908 1.47352 1.08188 1.04652 1.74673 1.18740 0.91082 0.78920 0.95974 1.21707 1.36768 1.06402 0.93152 0.92919 1.25812 0.94993 0.96555 1.01713 1.70037 1.38920 1.14817 1.32876 0.85455 0.78078 0.78122 0.79371 1.18646 1.20859 1.20091 1.16083 0.85025 0.81148 0.78232 1.90888 1.13918 1.86385 1.58965 1.42345 1.10719 1.01264 1.76741 1.19257 0.97648 0.88275 1.00563 1.23509 0.99800 0.84856 0.92914 1.68003 1.06962 1.28240 1.19542 1.21310 0.90302 0.88389 0.90814 1.58821 1.23256 1.18731 1.15824 1.22753 0.88835 0.98115 0.98414 1.23708 0.97636 0.92369 0.85022 0.84449 1.22843 0.98337 0.97767 0.98221 1.22824 1.01033 0.99851 0.93254 1.23999 0.83155 0.92442 0.98819 0.83816 1.23260 1.01504 0.97043 0.86825 1.89286 1.30043 1.87808 1.23685 1.68338 1.33488 0.98982 1.25737 1.23079 0.91520 0.94395 0.92559 0.90777 0.90720 0.89026 0.94955 0.98050 0.92408 0.73123 0.76670 0.88792 0.94316 0.89321 0.90352 0.89855 0.89150 0.87233 0.95138 0.82624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.94 10.25 127.77 1.31 3.25 16 2 N -0.61 -24.48 2.86 -869.33 -2.48 -26.96 16 3 C 0.27 14.26 5.16 85.63 0.44 14.70 16 4 C -0.54 -30.46 9.39 25.60 0.24 -30.22 16 5 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 6 C 0.01 0.48 5.46 84.66 0.46 0.94 16 7 N -0.93 -55.29 13.29 21.45 0.28 -55.00 16 8 Si 0.96 44.55 29.54 68.60 2.03 46.58 16 9 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 10 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 12 C 0.69 27.78 8.05 179.06 1.44 29.23 16 13 O -0.62 -31.58 13.62 -4.01 -0.05 -31.63 16 14 N -0.66 -18.12 5.26 -316.49 -1.66 -19.78 16 15 C 0.04 1.27 6.34 38.23 0.24 1.51 16 16 C 0.16 3.58 11.25 84.85 0.95 4.53 16 17 N -0.51 -13.12 9.79 -197.45 -1.93 -15.06 16 18 C 0.45 12.88 7.19 261.42 1.88 14.76 16 19 N -0.45 -10.64 3.86 -702.47 -2.71 -13.35 16 20 C 0.05 1.07 4.25 86.50 0.37 1.44 16 21 C 0.07 1.24 4.68 31.40 0.15 1.38 16 22 H 0.14 1.89 8.14 -2.39 -0.02 1.87 16 23 C -0.13 -1.82 6.25 31.71 0.20 -1.62 16 24 C -0.13 -1.69 6.26 31.71 0.20 -1.49 16 25 C 0.07 1.18 4.76 31.89 0.15 1.34 16 26 H 0.14 1.64 8.14 -2.39 -0.02 1.62 16 27 C 0.04 0.84 4.95 86.98 0.43 1.27 16 28 O -0.39 -8.16 11.24 -148.98 -1.67 -9.83 16 29 N -0.55 -17.88 8.70 -197.45 -1.72 -19.59 16 30 C 0.15 5.24 9.93 84.84 0.84 6.08 16 31 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.07 2.05 8.07 -2.38 -0.02 2.03 16 33 H 0.09 1.58 6.29 -2.39 -0.02 1.57 16 34 H 0.03 1.69 8.07 -2.39 -0.02 1.67 16 35 H 0.00 0.08 7.42 -2.39 -0.02 0.06 16 36 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 37 H 0.43 7.74 6.52 -92.70 -0.60 7.13 16 38 H 0.22 2.72 8.06 -2.91 -0.02 2.69 16 39 H 0.09 2.16 7.99 -2.39 -0.02 2.14 16 40 H 0.04 1.09 7.87 -2.39 -0.02 1.08 16 41 H 0.09 0.90 8.14 -2.39 -0.02 0.89 16 42 H 0.08 1.16 7.84 -2.39 -0.02 1.14 16 43 H 0.08 1.13 7.87 -2.38 -0.02 1.11 16 44 H 0.09 0.83 8.14 -2.39 -0.02 0.82 16 45 H 0.11 2.08 7.80 -2.39 -0.02 2.06 16 46 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.16 6.09 6.46 -2.91 -0.02 6.07 16 Total: -1.00 -78.68 378.87 -0.22 -78.90 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: 0.40 Total: 18.64 kcal Atomic # 6 Polarization: 37.79 SS G_CDS: 9.31 Total: 47.09 kcal Atomic # 7 Polarization: -139.52 SS G_CDS: -10.22 Total: -149.74 kcal Atomic # 8 Polarization: -39.74 SS G_CDS: -1.73 Total: -41.47 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -78.68 -0.22 -78.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881078181.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.661 kcal (2) G-P(sol) polarization free energy of solvation -78.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds