Wall clock time and date at job start Wed Apr 1 2020 05:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46318 * 120.45761 * 2 1 4 4 C 1.52867 * 109.90991 * 247.91066 * 3 2 1 5 5 H 1.09000 * 110.97005 * 144.34438 * 4 3 2 6 6 C 1.54590 * 109.31276 * 21.53361 * 4 3 2 7 7 C 1.54249 * 104.86822 * 265.29137 * 6 4 3 8 8 C 1.54441 * 105.03391 * 0.30612 * 7 6 4 9 9 H 1.09001 * 111.08430 * 216.91810 * 8 7 6 10 10 C 1.52859 * 108.53421 * 93.90797 * 8 7 6 11 11 C 1.35744 * 120.46653 * 179.97438 * 2 1 3 12 12 O 1.21289 * 120.57057 * 359.97361 * 11 2 1 13 13 N 1.47319 * 105.07127 * 337.11136 * 8 7 6 14 14 C 1.34779 * 127.46914 * 217.72427 * 13 8 7 15 15 O 1.21585 * 120.00294 * 180.02562 * 14 13 8 16 16 N 1.34776 * 119.99714 * 0.02973 * 14 13 8 17 17 C 1.40190 * 120.00090 * 179.97438 * 16 14 13 18 18 C 1.40403 * 125.97444 * 359.72314 * 17 16 14 19 19 C 1.35242 * 107.86916 * 179.82545 * 18 17 16 20 20 N 1.34966 * 107.86063 * 0.42646 * 19 18 17 21 21 C 1.46497 * 125.97696 * 179.75405 * 20 19 18 22 22 C 1.50699 * 109.47070 * 124.99864 * 21 20 19 23 23 H 1.08002 * 120.00389 * 359.97438 * 22 21 20 24 24 C 1.37875 * 119.99619 * 179.97438 * 22 21 20 25 25 N 1.31514 * 120.00193 * 359.97438 * 24 22 21 26 26 Si 1.86807 * 119.99811 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47002 * 60.00435 * 26 24 22 28 28 H 1.48501 * 109.46725 * 180.02562 * 26 24 22 29 29 H 1.48493 * 109.47250 * 300.00250 * 26 24 22 30 30 N 1.31209 * 125.97613 * 180.02562 * 17 16 14 31 31 H 1.09001 * 109.46666 * 90.00044 * 1 2 3 32 32 H 1.09000 * 109.46889 * 209.99750 * 1 2 3 33 33 H 1.09000 * 109.46731 * 330.00072 * 1 2 3 34 34 H 1.09004 * 109.39288 * 127.78203 * 3 2 1 35 35 H 1.08994 * 109.32709 * 8.00237 * 3 2 1 36 36 H 1.09000 * 110.36940 * 146.46399 * 6 4 3 37 37 H 1.08997 * 110.41827 * 24.14022 * 6 4 3 38 38 H 1.09002 * 110.34721 * 241.38673 * 7 6 4 39 39 H 1.09003 * 110.34523 * 119.22568 * 7 6 4 40 40 H 1.08996 * 109.43021 * 97.06686 * 10 8 7 41 41 H 1.09008 * 109.42660 * 216.91853 * 10 8 7 42 42 H 0.97004 * 119.99973 * 359.97438 * 16 14 13 43 43 H 1.08002 * 126.05901 * 359.97438 * 18 17 16 44 44 H 1.08000 * 126.06737 * 180.13323 * 19 18 17 45 45 H 1.08999 * 109.46746 * 244.99495 * 21 20 19 46 46 H 1.08996 * 109.47061 * 4.99627 * 21 20 19 47 47 H 0.97008 * 119.99610 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2068 1.2613 0.0000 4 6 2.9366 1.4360 -1.3318 5 1 2.9518 2.4832 -1.6338 6 6 2.2559 0.5580 -2.4068 7 6 3.0667 -0.7542 -2.4175 8 6 4.1600 -0.5584 -1.3444 9 1 5.0988 -1.0185 -1.6526 10 6 3.6552 -1.1413 -0.0246 11 6 2.1533 -1.1700 0.0005 12 8 1.5660 -2.2312 0.0015 13 7 4.3052 0.9012 -1.2074 14 6 5.4425 1.5971 -1.0104 15 8 5.4053 2.8087 -0.9156 16 7 6.6211 0.9499 -0.9185 17 6 7.8042 1.6737 -0.7141 18 6 7.9072 3.0687 -0.5931 19 6 9.2108 3.3736 -0.4021 20 7 9.9113 2.2200 -0.4110 21 6 11.3610 2.0921 -0.2432 22 6 11.6538 1.1444 0.8913 23 1 10.8413 0.6837 1.4335 24 6 12.9590 0.8654 1.2371 25 7 13.9485 1.4260 0.5765 26 14 13.3220 -0.3088 2.6439 27 1 12.7389 -1.6404 2.3402 28 1 14.7915 -0.4384 2.8137 29 1 12.7240 0.2194 3.8963 30 7 9.0096 1.1664 -0.6080 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 2.9332 1.2540 0.8126 35 1 1.5117 2.0885 0.1432 36 1 2.3076 1.0433 -3.3815 37 1 1.2189 0.3603 -2.1356 38 1 3.5201 -0.9115 -3.3962 39 1 2.4267 -1.5972 -2.1572 40 1 4.0468 -2.1510 0.0992 41 1 3.9962 -0.5171 0.8015 42 1 6.6508 -0.0168 -0.9938 43 1 7.0898 3.7730 -0.6414 44 1 9.6195 4.3647 -0.2710 45 1 11.8004 1.7050 -1.1626 46 1 11.7885 3.0695 -0.0197 47 1 14.8668 1.2300 0.8201 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887795992.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:10 Heat of formation + Delta-G solvation = 33.141607 kcal Electronic energy + Delta-G solvation = -31025.774876 eV Core-core repulsion = 26824.824881 eV Total energy + Delta-G solvation = -4200.949996 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.76898 -42.03993 -40.53488 -38.73826 -36.52492 -36.19325 -35.25072 -33.17146 -32.88324 -32.05334 -30.91630 -30.41235 -28.51018 -26.97881 -26.14773 -25.23962 -24.06652 -22.59531 -22.28399 -21.49753 -20.44482 -19.65567 -19.31826 -18.65779 -18.09425 -18.02754 -17.93743 -17.10960 -16.99461 -16.48494 -16.35728 -15.80540 -15.52162 -15.28242 -14.95456 -14.70720 -14.48696 -14.30564 -14.21860 -14.12637 -13.78875 -13.75213 -13.69616 -13.52707 -13.23103 -13.01272 -12.93034 -12.71515 -12.52225 -12.33141 -12.26109 -12.08253 -11.97761 -11.62523 -11.51420 -11.39221 -11.11709 -10.92064 -10.70775 -10.23662 -9.74392 -9.57195 -9.03384 -8.31460 -6.45490 0.99709 1.10173 1.39181 1.40906 1.45069 1.49598 1.68806 1.97512 1.98975 2.35714 2.37798 2.78166 3.00238 3.18993 3.54058 3.62794 3.73693 3.86724 3.98916 4.06204 4.15386 4.27059 4.28597 4.36889 4.47262 4.51652 4.64413 4.65121 4.69403 4.76233 4.85900 4.90594 4.93442 4.96875 5.00063 5.00927 5.05731 5.12949 5.20973 5.37798 5.48502 5.57828 5.77641 5.89127 5.98138 6.21895 6.31034 6.59999 6.68335 7.05365 7.11333 7.24350 7.35407 8.75695 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017682 B = 0.002373 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.170740 B =11798.753009 C =12709.728443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.611 5.611 3 C 0.103 3.897 4 C 0.132 3.868 5 H 0.112 0.888 6 C -0.121 4.121 7 C -0.134 4.134 8 C 0.136 3.864 9 H 0.113 0.887 10 C -0.156 4.156 11 C 0.527 3.473 12 O -0.578 6.578 13 N -0.621 5.621 14 C 0.739 3.261 15 O -0.590 6.590 16 N -0.635 5.635 17 C 0.285 3.715 18 C -0.290 4.290 19 C 0.056 3.944 20 N -0.345 5.345 21 C 0.273 3.727 22 C -0.547 4.547 23 H 0.053 0.947 24 C 0.019 3.981 25 N -0.921 5.921 26 Si 0.970 3.030 27 H -0.273 1.273 28 H -0.274 1.274 29 H -0.270 1.270 30 N -0.348 5.348 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.127 0.873 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.116 0.884 41 H 0.095 0.905 42 H 0.416 0.584 43 H 0.169 0.831 44 H 0.201 0.799 45 H 0.021 0.979 46 H 0.059 0.941 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.030 -0.033 -4.656 28.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.344 5.344 3 C -0.021 4.021 4 C 0.027 3.973 5 H 0.130 0.870 6 C -0.159 4.159 7 C -0.172 4.172 8 C 0.031 3.969 9 H 0.131 0.869 10 C -0.197 4.197 11 C 0.317 3.683 12 O -0.458 6.458 13 N -0.358 5.358 14 C 0.441 3.559 15 O -0.467 6.467 16 N -0.287 5.287 17 C 0.029 3.971 18 C -0.321 4.321 19 C -0.092 4.092 20 N -0.127 5.127 21 C 0.155 3.845 22 C -0.585 4.585 23 H 0.071 0.929 24 C -0.182 4.182 25 N -0.559 5.559 26 Si 0.794 3.206 27 H -0.198 1.198 28 H -0.199 1.199 29 H -0.195 1.195 30 N -0.179 5.179 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.115 0.885 34 H 0.089 0.911 35 H 0.145 0.855 36 H 0.103 0.897 37 H 0.114 0.886 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.134 0.866 41 H 0.113 0.887 42 H 0.254 0.746 43 H 0.186 0.814 44 H 0.217 0.783 45 H 0.039 0.961 46 H 0.076 0.924 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -27.297 -0.684 -4.572 27.686 hybrid contribution 0.359 -0.411 0.681 0.873 sum -26.938 -1.095 -3.890 27.240 Atomic orbital electron populations 1.21869 0.77668 1.03723 1.02815 1.48135 1.07594 1.05736 1.72951 1.22135 0.96953 0.86271 0.96776 1.22411 0.78548 1.00539 0.95758 0.86975 1.22606 1.00139 0.94347 0.98851 1.22686 0.96502 0.98705 0.99306 1.21840 1.00876 0.80178 0.93960 0.86872 1.22274 0.92016 1.05472 0.99939 1.20759 0.90350 0.83158 0.74058 1.90712 1.72533 1.31076 1.51522 1.47906 1.05121 1.07500 1.75269 1.15066 0.79015 0.84250 0.77579 1.90850 1.85139 1.12490 1.58218 1.41392 1.02113 1.10337 1.74849 1.19046 0.86032 0.91364 1.00609 1.21673 0.96882 0.94130 1.19396 1.23165 0.92128 0.93322 1.00609 1.48815 1.07882 1.02902 1.53126 1.19316 0.69677 0.98732 0.96818 1.21374 0.92629 1.27891 1.16602 0.92913 1.25725 0.95392 0.97650 0.99413 1.69990 0.99913 1.44234 1.41791 0.85429 0.77340 0.78919 0.78920 1.19848 1.19886 1.19485 1.77248 0.97518 1.13315 1.29793 0.91334 0.92264 0.88452 0.91139 0.85515 0.89662 0.88606 0.89238 0.90395 0.86609 0.88661 0.74621 0.81374 0.78255 0.96120 0.92360 0.91869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.69 10.04 127.77 1.28 1.98 16 2 N -0.61 -7.49 1.77 -846.61 -1.50 -8.98 16 3 C 0.10 1.06 5.69 86.37 0.49 1.55 16 4 C 0.13 1.67 3.70 45.30 0.17 1.84 16 5 H 0.11 1.50 7.89 -2.39 -0.02 1.48 16 6 C -0.12 -1.22 6.02 31.56 0.19 -1.03 16 7 C -0.13 -1.62 5.98 31.51 0.19 -1.43 16 8 C 0.14 1.91 3.61 45.28 0.16 2.07 16 9 H 0.11 1.41 6.87 -2.39 -0.02 1.39 16 10 C -0.16 -2.37 5.30 29.66 0.16 -2.21 16 11 C 0.53 9.38 4.84 87.36 0.42 9.80 16 12 O -0.58 -14.66 16.46 -3.06 -0.05 -14.71 16 13 N -0.62 -10.99 2.54 -782.37 -1.99 -12.98 16 14 C 0.74 19.64 8.52 179.05 1.53 21.16 16 15 O -0.59 -19.16 13.72 -3.98 -0.05 -19.22 16 16 N -0.64 -18.67 5.42 -321.24 -1.74 -20.41 16 17 C 0.29 11.09 8.11 133.32 1.08 12.17 16 18 C -0.29 -11.02 9.61 22.11 0.21 -10.80 16 19 C 0.06 2.17 11.44 83.52 0.96 3.13 16 20 N -0.35 -16.02 3.67 -351.86 -1.29 -17.31 16 21 C 0.27 14.07 6.26 85.63 0.54 14.61 16 22 C -0.55 -30.65 9.24 25.60 0.24 -30.41 16 23 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 24 C 0.02 1.02 5.46 84.65 0.46 1.48 16 25 N -0.92 -52.00 13.29 21.45 0.28 -51.71 16 26 Si 0.97 43.40 29.54 68.60 2.03 45.43 16 27 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 28 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 29 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 30 N -0.35 -15.91 12.42 -54.44 -0.68 -16.58 16 31 H 0.07 0.44 7.06 -2.39 -0.02 0.43 16 32 H 0.06 0.75 7.49 -2.39 -0.02 0.74 16 33 H 0.10 0.34 7.89 -2.39 -0.02 0.32 16 34 H 0.07 0.96 7.01 -2.39 -0.02 0.94 16 35 H 0.13 0.63 7.78 -2.39 -0.02 0.61 16 36 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.10 0.83 5.26 -2.39 -0.01 0.82 16 38 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.08 1.14 6.21 -2.39 -0.01 1.13 16 40 H 0.12 1.67 8.13 -2.39 -0.02 1.65 16 41 H 0.10 1.51 7.05 -2.38 -0.02 1.49 16 42 H 0.42 10.14 7.20 -92.71 -0.67 9.48 16 43 H 0.17 6.16 5.91 -2.91 -0.02 6.14 16 44 H 0.20 6.06 8.06 -2.91 -0.02 6.04 16 45 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.06 2.93 8.07 -2.39 -0.02 2.91 16 47 H 0.27 14.43 8.31 -92.70 -0.77 13.66 16 Total: -1.00 -74.38 372.38 3.44 -70.94 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 0.35 Total: 21.62 kcal Atomic # 6 Polarization: 15.84 SS G_CDS: 8.07 Total: 23.91 kcal Atomic # 7 Polarization: -121.07 SS G_CDS: -6.91 Total: -127.97 kcal Atomic # 8 Polarization: -33.82 SS G_CDS: -0.10 Total: -33.93 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -74.38 3.44 -70.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887795992.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.084 kcal (2) G-P(sol) polarization free energy of solvation -74.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds